IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
113	 37.89	+1	128109..129623	-	504	161508379	spa	USA300HOU_0122	-	immunoglobulin G binding protein A
114	 27.36	-1	130008..130760	-	250	161508380	sarH1	USA300HOU_0123	-	staphylococcal accessory regulator H1
115	 36.74	+1	131129..132127	-	332	161508381	sirC	USA300HOU_0124	-	iron (Fe3+) ABC transporter membrane protein
116	 38.55	+1	132124..133119	-	331	161508382	sirB	USA300HOU_0125	-	iron (Fe3+) ABC transporter membrane protein
117	 32.62	0	133135..134109	-	324	161508383	sirA	USA300HOU_0126	-	iron (Fe3+) ABC transporter binding protein
118	 36.80	+1	134358..135338	+	326	161508384	-	USA300HOU_0127	-	pyridoxal-phosphate dependent enzyme
119	 37.39	+1	135335..136345	+	336	161508385	ocd	USA300HOU_0128	-	ornithine cyclodeaminase
120	 35.90	0	136366..138120	+	584	161508386	-	USA300HOU_0129	-	IucA/IucC family siderophore biosynthesis protein
121	 39.14	+1	138113..139369	+	418	161508387	-	USA300HOU_0130	-	major facilitator transporter
122	 36.61	+1	139359..141095	+	578	161508388	-	USA300HOU_0131	-	IucA/IucC family siderophore biosynthesis protein
123	 36.14	0	141076..142854	+	592	161508389	-	USA300HOU_0132	-	IucA/IucC family siderophore biosynthesis protein
124	 40.13	+2	142826..143605	+	259	161508390	-	USA300HOU_0133	-	HpcH/HpaI family aldolase
125	 36.66	+1	143605..144807	+	400	161508391	lysA1	USA300HOU_0134	-	diaminopimelate decarboxylase
126	 36.73	+1	144811..145575	+	254	161508392	-	USA300HOU_0135	-	hypothetical protein
127	 29.66	0	145771..146178	+	135	161508393	-	USA300HOU_0136	-	hypothetical protein
128	 31.58	0	146228..146854	+	208	161508394	-	USA300HOU_0137	-	hypothetical protein
129	 40.93	+2	147066..147842	+	258	161508395	-	USA300HOU_0138	-	acetoin reductase
130	 23.58	-2	147986..148108	+	40	161508396	-	USA300HOU_0139	-	hypothetical protein
131	 31.91	0	148178..149158	+	326	161508397	galE	USA300HOU_0140	-	UDP-glucose 4-epimerase
132	 34.78	0	149121..149813	+	230	161508398	-	USA300HOU_0141	-	glycosyltransferase
133	 33.25	0	150023..151189	+	388	161508399	-	USA300HOU_0142	-	glycosyltransferase
134	 30.51	0	151170..152408	+	412	161508400	-	USA300HOU_0143	-	hypothetical protein
135	 31.38	0	152398..153828	+	476	161508401	-	USA300HOU_0144	-	MOP superfamily multidrug/oligosaccharidyl-lipid/polysaccharide flippase transporter
136	 35.67	0	154096..154695	+	199	161508402	sodM	USA300HOU_0145	-	superoxide dismutase
137	 35.40	0	155063..155788	+	241	161508403	sasD	USA300HOU_0146	-	cell wall surface anchor protein
138	 35.71	0	155980..156735	-	251	161508404	-	USA300HOU_0147	-	transcriptional regulator
139	 37.57	+1	156971..157678	+	235	161508405	deoD1	USA300HOU_0148	-	purine nucleoside phosphorylase
140	 32.00	0	157685..159037	+	450	161508406	-	USA300HOU_0149	-	major facilitator superfamily tetracycline:cation symporter
141	 39.82	+1	159118..159780	+	220	161508407	deoC1	USA300HOU_0150	-	deoxyribose-phosphate aldolase
142	 36.81	+1	159808..160986	+	392	161508408	deoB1	USA300HOU_0151	-	phosphopentomutase
143	 37.01	+1	161117..161932	-	271	161508409	-	USA300HOU_0152	-	ABC transporter ATP-binding protein
144	 34.71	0	161929..162654	-	241	161508410	-	USA300HOU_0153	-	ABC transporter ATP-binding protein
145	 34.88	0	162731..163504	-	257	161508411	-	USA300HOU_0154	-	ABC transporter ATP-binding protein
146	 31.03	0	163718..164674	-	318	161508412	-	USA300HOU_0155	-	ABC transporter ATP-binding protein
147	 36.83	+1	164903..166447	+	514	161508413	-	USA300HOU_0156	-	hypothetical protein
148	 36.33	0	166498..168033	+	511	161508414	-	USA300HOU_0157	-	nucleotidase
149	 22.32	-2	169537..169863	+	108	161508415	-	USA300HOU_0160	-	hypothetical protein
150	 36.13	0	171101..173710	+	869	161508416	-	USA300HOU_0162	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
151	 29.90	0	174055..174723	+	222	161508417	cap5A	USA300HOU_0163	-	capsular polysaccharide biosynthesis protein Cap5A
152	 33.62	0	174739..175425	+	228	161508418	cap5B	USA300HOU_0164	-	capsular polysaccharide biosynthesis protein Cap5B
153	 31.76	0	175428..176192	+	254	161508419	cap5C	USA300HOU_0165	-	capsular polysaccharide biosynthesis protein Cap5C
154	 33.92	0	178026..179054	+	342	161508420	cap5E	USA300HOU_0167	-	capsular polysaccharide biosynthesis protein Cap5E
155	 34.86	0	179061..180176	+	371	161508421	cap5F	USA300HOU_0168	-	capsular polysaccharide biosynthesis protein Cap5F
156	 32.54	0	181307..181933	+	208	161508422	cap5H	USA300HOU_0170	-	capsular polysaccharide biosynthesis protein Cap5H
157	 29.19	0	181938..183047	+	369	161508423	cap5I	USA300HOU_0171	-	capsular polysaccharide biosynthesis protein Cap5I
158	 29.31	0	183061..184227	+	388	161508424	cap5J	USA300HOU_0172	-	capsular polysaccharide biosynthesis protein Cap5J
159	 26.78	-1	184220..185425	+	401	161508425	cap5K	USA300HOU_0173	-	capsular polysaccharide synthesis protein Cap5K
160	 35.07	0	185426..186631	+	401	161508426	cap5L	USA300HOU_0174	-	capsular polysaccharide biosynthesis protein Cap5L
161	 32.62	0	186642..187199	+	185	161508427	cap5M	USA300HOU_0175	-	capsular polysaccharide biosynthesis protein Cap5M
162	 33.56	0	187199..188086	+	295	161508428	cap5N	USA300HOU_0176	-	capsular polysaccharide biosynthesis protein Cap5N
163	 34.36	0	188140..189402	+	420	161508429	cap5O	USA300HOU_0177	-	capsular polysaccharide biosynthesis protein Cap5O
164	 36.14	0	189449..190624	+	391	161508430	cap5P	USA300HOU_0178	-	capsular polysaccharide biosynthesis protein Cap5P
165	 30.53	0	190689..191009	-	106	161508431	isdG1	USA300HOU_0179	-	heme-degrading monooxygenase IsdI
166	 32.03	0	191022..191405	-	127	161508432	-	USA300HOU_0180	-	hypothetical protein
167	 36.29	0	191832..193319	+	495	161508433	aldH2	USA300HOU_0181	-	aldehyde dehydrogenase (NAD(+))
168	 31.98	0	193965..194924	+	319	161508434	-	USA300HOU_0182	-	CDF family cation diffusion facilitator
169	 31.37	0	194986..195189	-	67	161508435	-	USA300HOU_0183	-	hypothetical protein
170	 34.11	0	195368..195880	+	170	161508436	-	USA300HOU_0184	-	hypothetical protein
171	 35.36	0	196222..196962	+	246	161508437	-	USA300HOU_0185	-	nitrite/nitrate ABC transporter ATP-binding protein
172	 36.82	+1	196976..197950	+	324	161508438	-	USA300HOU_0186	-	ABC transporter ATP-binding protein
173	 35.30	0	197947..198708	+	253	161508439	-	USA300HOU_0187	-	ABC transporter ATP-binding protein
174	 32.50	0	199970..200329	+	119	161508440	-	USA300HOU_0189	-	hypothetical protein
175	 34.98	0	200496..201527	+	343	161508441	fdh	USA300HOU_0190	-	formate dehydrogenase
176	 32.37	0	201913..203163	+	416	161508442	-	USA300HOU_0191	-	major facilitator superfamily multidrug cation symporter or antiporter
177	 35.20	0	203592..210785	+	2397	161508443	-	USA300HOU_0192	-	non-ribosomal peptide synthetase
178	 33.64	0	210798..211442	+	214	161508444	-	USA300HOU_0193	-	holo-[acyl-carrier-protein] synthase
179	 36.57	+1	211770..212264	-	164	161508445	-	USA300HOU_0194	-	hypothetical protein
180	 34.64	0	212519..213283	-	254	161508446	argB	USA300HOU_0195	-	acetylglutamate kinase
181	 38.00	+1	213299..214540	-	413	161508447	argJ	USA300HOU_0196	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
182	 35.46	0	214552..215586	-	344	161508448	argC	USA300HOU_0197	-	N-acetyl-gamma-glutamyl-phosphate reductase
183	 37.79	+1	215622..216833	-	403	161508449	argD	USA300HOU_0198	-	ornithine aminotransferase
184	 33.04	0	217059..218414	-	451	161508450	-	USA300HOU_0199	-	LIVCS family branched chain amino acid:cation symporter
185	 35.13	0	218690..219247	-	185	161508451	-	USA300HOU_0200	-	isochorismatase
186	 36.50	+1	219314..220954	-	546	161508452	-	USA300HOU_0201	-	indolepyruvate decarboxylase
187	 34.31	0	221148..221249	+	33	161508453	-	USA300HOU_0202	-	hypothetical protein
188	 37.89	+1	221228..223288	-	686	161508454	-	USA300HOU_0203	-	PTS family glucose/glucoside (glc) porter component IIABC
189	 35.32	0	223859..224914	+	351	161508455	-	USA300HOU_0204	-	hypothetical protein
190	 38.13	+1	224914..225810	+	298	161508456	-	USA300HOU_0205	-	N-acetylmuramic acid-6-phosphate etherase
191	 38.08	+1	225822..227276	+	484	161508457	-	USA300HOU_0206	-	PTS family sucrose porter component IIBC
192	 34.36	0	227276..228154	+	292	161508458	-	USA300HOU_0207	-	transcriptional regulator
193	 33.23	0	228842..231631	+	929	161508459	hsdR2	USA300HOU_0208	-	type I site-specific deoxyribonuclease restriction subunit
194	 28.23	-1	231836..232678	+	280	161508460	-	USA300HOU_0209	-	hypothetical protein
195	 29.76	0	232680..233603	+	307	161508461	-	USA300HOU_0210	-	hypothetical protein
196	 27.40	-1	233590..234702	+	370	161508462	-	USA300HOU_0211	-	hypothetical protein
197	 35.66	0	234967..236559	-	530	161508463	-	USA300HOU_0212	-	oligopeptide ABC transporter ATP-binding protein
198	 32.85	0	236558..237994	+	478	161508464	-	USA300HOU_0213	-	oligopeptide ABC transporter membrane protein
199	 34.62	0	238000..239163	+	387	161508465	-	USA300HOU_0214	-	oligopeptide ABC transporter membrane protein
200	 33.33	0	239180..240955	+	591	161508466	rlp	USA300HOU_0215	-	RGD domain-containing lipoprotein
201	 37.57	+1	240993..242999	+	668	161508467	ggt	USA300HOU_0216	-	T3 family gamma-glutamyltransferase
202	 29.46	0	243297..244070	-	257	161508468	-	USA300HOU_0217	-	lipoprotein
203	 32.22	0	244260..244886	-	208	161508469	-	USA300HOU_0218	-	azoreductase
204	 36.38	+1	245083..245673	+	196	161508470	-	USA300HOU_0219	-	M23 family peptidase
205	 35.06	0	246056..247153	+	365	161508471	-	USA300HOU_0220	-	maltose/maltodextrin ABC transporter ATP-binding protein
206	 33.96	0	247166..248437	+	423	161508472	-	USA300HOU_0221	-	ABC transporter substrate-binding protein
207	 35.54	0	248440..249708	+	422	161508473	-	USA300HOU_0222	-	maltose/maltodextrin ABC transporter membrane protein
208	 33.93	0	249710..250549	+	279	161508474	-	USA300HOU_0223	-	maltose/maltodextrin ABC transporter membrane protein
209	 38.89	+1	250620..251699	+	359	161508475	-	USA300HOU_0224	-	dehydrogenase
210	 39.39	+1	251724..252764	+	346	161508476	-	USA300HOU_0225	-	dehydrogenase
211	 35.91	0	252819..253787	+	322	161508477	-	USA300HOU_0226	-	hypothetical protein
212	 30.39	0	253975..254076	+	33	161508478	-	USA300HOU_0227	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.