IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1509	 31.21	0	1658349..1658678	-	109	161509775	-	USA300HOU_1548	-	hypothetical protein
1510	 34.65	0	1658678..1659664	-	328	161509776	glcK	USA300HOU_1549	-	glucokinase
1511	 26.47	-1	1659661..1659864	-	67	161509777	-	USA300HOU_1550	-	hypothetical protein
1512	 27.66	-1	1659845..1661308	-	487	161509778	-	USA300HOU_1551	-	peptidase
1513	 30.19	0	1661320..1661859	-	179	161509779	-	USA300HOU_1552	-	5-formyltetrahydrofolate cyclo-ligase
1514	 34.00	0	1662068..1662217	-	49	161509780	rpmG3	USA300HOU_1553	-	50S ribosomal protein L33
1515	 33.48	0	1662330..1664405	-	691	161509781	pbp3	USA300HOU_1554	-	penicillin-binding protein 3
1516	 35.00	0	1664526..1665125	-	199	161509782	sodA	USA300HOU_1555	-	superoxide dismutase
1517	 28.22	-1	1665402..1665812	-	136	161509783	-	USA300HOU_1556	-	Fur family transcriptional regulator
1518	 31.96	0	1665799..1666671	-	290	161509784	-	USA300HOU_1557	-	ABC transporter ATP-binding protein
1519	 29.69	0	1666704..1667471	-	255	161509785	-	USA300HOU_1558	-	ABC transporter ATP-binding protein
1520	 33.22	0	1667615..1668505	-	296	161509786	nfo	USA300HOU_1559	-	endonuclease IV
1521	 32.67	0	1668515..1669861	-	448	161509787	-	USA300HOU_1560	-	ATP-dependent RNA helicase
1522	 31.06	0	1669975..1671075	-	366	161509788	-	USA300HOU_1561	-	hypothetical protein
1523	 32.15	0	1671078..1671755	-	225	161509789	-	USA300HOU_1562	-	hypothetical protein
1524	 33.69	0	1671886..1672992	-	368	161509790	rpoD	USA300HOU_1563	-	RNA polymerase sigma factor RpoD
1525	 31.61	0	1673216..1675015	-	599	161509791	dnaG	USA300HOU_1564	-	DNA primase
1526	 32.48	0	1675076..1675894	-	272	161509792	-	USA300HOU_1565	-	hypothetical protein
1527	 34.27	0	1676863..1678254	+	463	161509793	glyS	USA300HOU_1566	-	glycyl-tRNA synthetase
1528	 32.67	0	1678404..1679156	-	250	161509794	recO	USA300HOU_1567	-	recombination protein RecO
1529	 33.22	0	1679178..1680077	-	299	161509795	era	USA300HOU_1568	-	GTP-binding protein Era
1530	 35.56	0	1680078..1680482	-	134	161509796	cdd	USA300HOU_1569	-	cytidine deaminase
1531	 28.99	0	1680493..1680837	-	114	161509797	dgkA2	USA300HOU_1570	-	diacylglycerol kinase
1532	 32.26	0	1680840..1681307	-	155	161509798	-	USA300HOU_1571	-	hypothetical protein
1533	 35.23	0	1681308..1682255	-	315	161509799	phoH	USA300HOU_1572	-	phosphate starvation-inducible protein PhoH
1534	 32.47	0	1682559..1683257	-	232	161509800	-	USA300HOU_1573	-	hypothetical protein
1535	 37.17	+1	1683274..1684263	-	329	161509801	-	USA300HOU_1574	-	hypothetical protein
1536	 32.49	0	1684281..1684988	-	235	161509802	-	USA300HOU_1575	-	hypothetical protein
1537	 32.20	0	1685208..1685384	-	58	161509803	rpsU	USA300HOU_1576	-	30S ribosomal protein S21
1538	 34.82	0	1685677..1687023	-	448	161509804	-	USA300HOU_1577	-	hypothetical protein
1539	 31.50	0	1687030..1687791	-	253	161509805	-	USA300HOU_1578	-	hypothetical protein
1540	 34.29	0	1687784..1688722	-	312	161509806	prmA	USA300HOU_1579	-	ribosomal protein L11 methyltransferase
1541	 35.70	0	1688726..1689865	-	379	161509807	dnaJ	USA300HOU_1580	-	chaperone DnaJ
1542	 35.57	0	1690001..1691833	-	610	161509808	dnaK	USA300HOU_1581	-	chaperone DnaK
1543	 31.42	0	1691902..1692528	-	208	161509809	grpE	USA300HOU_1582	-	chaperone GrpE
1544	 28.63	-1	1692560..1693537	-	325	161509810	hrcA	USA300HOU_1583	-	heat shock transcriptional repressor HrcA
1545	 32.82	0	1693637..1694794	-	385	161509811	hemN	USA300HOU_1584	-	coproporphyrinogen III oxidase
1546	 44.19	+2	1695013..1695141	-	42	161509812	-	USA300HOU_1585	-	hypothetical protein
1547	 33.99	0	1695324..1697147	-	607	161509813	lepA	USA300HOU_1586	-	GTP-binding protein LepA
1548	 31.35	0	1697493..1697744	+	83	161509814	rpsT	USA300HOU_1587	-	30S ribosomal protein S20
1549	 26.87	-1	1697789..1698763	-	324	161509815	holA	USA300HOU_1588	-	DNA polymerase III subunit delta
1550	 28.47	-1	1698820..1701021	-	733	161509816	comEC	USA300HOU_1589	-	competence protein ComEC
1551	 33.33	0	1701026..1701496	-	156	161509817	comEB	USA300HOU_1590	-	competence protein ComEB
1552	 29.99	0	1701579..1702265	-	228	161509818	comEA	USA300HOU_1591	-	competence protein comEA
1553	 30.13	0	1702305..1703021	-	238	161509819	-	USA300HOU_1592	-	hypothetical protein
1554	 33.05	0	1703024..1703377	-	117	161509820	-	USA300HOU_1593	-	hypothetical protein
1555	 31.97	0	1703378..1703962	-	194	161509821	-	USA300HOU_1594	-	hypothetical protein
1556	 34.39	0	1703952..1704521	-	189	161509822	nadD	USA300HOU_1595	-	nicotinate-nucleotide adenylyltransferase
1557	 28.52	-1	1704524..1704814	-	96	161509823	-	USA300HOU_1596	-	hypothetical protein
1558	 31.35	0	1704818..1705624	-	268	161509824	aroE	USA300HOU_1597	-	shikimate 5-dehydrogenase
1559	 34.06	0	1705638..1706738	-	366	161509825	-	USA300HOU_1598	-	GTP-binding protein YqeH
1560	 32.95	0	1706739..1707266	-	175	161509826	-	USA300HOU_1599	-	HAD family phosphatase
1561	 33.19	0	1707286..1707972	-	228	161509827	mtnN/pfs	USA300HOU_1600	-	bifunctional methylthioadenosine nucleosidase/adenosylhomocysteine nucleosidase
1562	 24.07	-2	1708018..1708179	-	53	161509828	-	USA300HOU_1601	-	hypothetical protein
1563	 27.78	-1	1708286..1708555	+	89	161509829	-	USA300HOU_1602	-	hypothetical protein
1564	 28.79	-1	1708757..1709461	-	234	161509830	-	USA300HOU_1603	-	enterotoxin
1565	 26.70	-1	1709923..1711143	-	406	161509831	-	USA300HOU_1604	-	hypothetical protein
1566	 34.93	0	1712674..1713426	-	250	161509832	-	USA300HOU_1605	-	hypothetical protein
1567	 35.68	0	1713426..1714787	-	453	161509833	-	USA300HOU_1606	-	biotin carboxylase
1568	 30.44	0	1714801..1715250	-	149	161509834	-	USA300HOU_1607	-	acetyl-CoA carboxylase biotin carboxyl carrier subunit
1569	 34.32	0	1715252..1716262	-	336	161509835	-	USA300HOU_1608	-	hypothetical protein
1570	 32.93	0	1716252..1716986	-	244	161509836	-	USA300HOU_1609	-	hypothetical protein
1571	 33.33	0	1717312..1717788	-	158	161509837	greA	USA300HOU_1610	-	transcription elongation factor
1572	 33.49	0	1717816..1718439	-	207	161509838	udk	USA300HOU_1611	-	uridine kinase
1573	 35.46	0	1718439..1719707	-	422	161509839	-	USA300HOU_1612	-	U32 family peptidase
1574	 33.87	0	1719719..1720648	-	309	161509840	-	USA300HOU_1613	-	U32 family peptidase
1575	 29.26	0	1720645..1721283	-	212	161509841	-	USA300HOU_1614	-	caffeoyl-CoA O-methyltransferase
1576	 32.69	0	1721568..1721876	-	102	161509842	-	USA300HOU_1615	-	hypothetical protein
1577	 32.87	0	1721891..1722319	-	142	161509843	-	USA300HOU_1616	-	hypothetical protein
1578	 30.65	0	1722323..1722583	-	86	161509844	-	USA300HOU_1617	-	hypothetical protein
1579	 35.16	0	1722646..1725279	-	877	161509845	alaS	USA300HOU_1618	-	alanyl-tRNA synthetase
1580	 32.77	0	1725619..1728096	-	825	161509846	recD	USA300HOU_1619	-	exodeoxyribonuclease V alpha subunit
1581	 31.24	0	1728098..1728766	-	222	161509847	-	USA300HOU_1620	-	tetratricopeptide domain-containing protein
1582	 34.94	0	1729228..1730346	-	372	161509848	trmU	USA300HOU_1621	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1583	 34.73	0	1730347..1731489	-	380	161509849	csd1	USA300HOU_1622	-	cysteine desulfurase
1584	 36.09	0	1731801..1732814	+	337	161509850	-	USA300HOU_1623	-	dehydrogenase
1585	 24.49	-2	1733051..1733197	-	48	161509851	-	USA300HOU_1624	-	hypothetical protein
1586	 28.42	-1	1733237..1733419	-	60	161509852	-	USA300HOU_1625	-	hypothetical protein
1587	 32.95	0	1735461..1736234	-	257	161509853	-	USA300HOU_1626	-	hypothetical protein
1588	 24.03	-2	1736234..1736362	-	42	161509854	-	USA300HOU_1627	-	hypothetical protein
1589	 35.60	0	1736695..1738461	-	588	161509855	aspS	USA300HOU_1628	-	aspartyl-tRNA synthetase
1590	 32.70	0	1738477..1739739	-	420	161509856	hisS	USA300HOU_1629	-	histidyl-tRNA synthetase
1591	 33.33	0	1740200..1741075	-	291	161509857	lytH	USA300HOU_1630	-	N-acetylmuramoyl-L-alanine amidase
1592	 32.01	0	1741072..1741524	-	150	161509858	dtd	USA300HOU_1631	-	D-tyrosyl-tRNA deacylase
1593	 34.55	0	1741536..1743746	-	736	161509859	relA2	USA300HOU_1632	-	GTP pyrophosphokinase
1594	 34.49	0	1744153..1744671	-	172	161509860	apt	USA300HOU_1633	-	adenine phosphoribosyltransferase
1595	 32.37	0	1744693..1746966	-	757	161509861	recJ	USA300HOU_1634	-	recombination protein RecJ
1596	 24.39	-2	1746917..1747039	+	40	161509862	-	USA300HOU_1635	-	hypothetical protein
1597	 32.63	0	1747169..1749448	-	759	161509863	secDF	USA300HOU_1636	-	bifunctional preprotein translocase subunit SecD/SecF
1598	 31.80	0	1749723..1749983	-	86	161509864	yajC	USA300HOU_1637	-	type I general secretory pathway preprotein translocase subunit YajC
1599	 35.70	0	1750002..1751141	-	379	161509865	tgt	USA300HOU_1638	-	queuine tRNA-ribosyltransferase
1600	 33.33	0	1751164..1752189	-	341	161509866	queA	USA300HOU_1639	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1601	 37.21	+1	1752191..1753195	-	334	161509867	ruvB	USA300HOU_1640	-	Holliday junction DNA helicase B
1602	 33.17	0	1753227..1753829	-	200	161509868	ruvA	USA300HOU_1641	-	crossover junction endodeoxyribonuclease
1603	 29.17	0	1753843..1754298	-	151	161509869	-	USA300HOU_1642	-	hypothetical protein
1604	 36.66	+1	1754311..1755603	-	430	161509870	-	USA300HOU_1643	-	GTPase ObgE
1605	 38.25	+1	1755958..1756242	-	94	161509871	rpmA	USA300HOU_1644	-	50S ribosomal protein L27
1606	 34.27	0	1756254..1756574	-	106	161509872	-	USA300HOU_1645	-	hypothetical protein
1607	 33.66	0	1756580..1756888	-	102	161509873	rplU	USA300HOU_1646	-	50S ribosomal protein L21
1608	 28.81	-1	1757055..1757585	-	176	161509874	-	USA300HOU_1647	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.