IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.63   STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1362	 36.58	+1	1532168..1532875	-	235	161509628	-	USA300HOU_1398	-	hypothetical protein
1363	 28.91	0	1532920..1533507	-	195	161509629	-	USA300HOU_1399	-	hypothetical protein
1364	 30.03	0	1533497..1534072	-	191	161509630	-	USA300HOU_1400	-	hypothetical protein
1365	 30.84	0	1534086..1535330	-	414	161509631	-	USA300HOU_1401	-	hypothetical protein
1366	 35.72	0	1535337..1536635	-	432	161509632	aroA	USA300HOU_1402	-	3-phosphoshikimate 1-carboxyvinyltransferase
1367	 32.30	0	1536645..1537709	-	354	161509633	aroB	USA300HOU_1403	-	3-dehydroquinate synthase
1368	 35.22	0	1537735..1538901	-	388	161509634	aroC	USA300HOU_1404	-	chorismate synthase
1369	 20.90	-2	1539287..1539487	-	66	161509635	-	USA300HOU_1405	-	hypothetical protein
1370	 34.00	0	1539696..1540145	-	149	161509636	ndk	USA300HOU_1406	-	nucleoside-diphosphate kinase
1371	 34.69	0	1540237..1541196	-	319	161509637	gerC	USA300HOU_1407	-	trans-hexaprenyltranstransferase subunit II
1372	 34.16	0	1541198..1541923	-	241	161509638	-	USA300HOU_1408	-	ubiquinone/menaquinone biosynthesis methyltransferase
1373	 27.75	-1	1541926..1542498	-	190	161509639	-	USA300HOU_1409	-	hypothetical protein
1374	 36.63	+1	1542929..1543201	-	90	161509640	hu	USA300HOU_1410	-	DNA-binding protein HU
1375	 34.43	0	1543372..1544370	-	332	161509641	gpsA	USA300HOU_1411	-	glycerol-3-phosphate dehydrogenase (NAD(+))
1376	 35.24	0	1544387..1545697	-	436	161509642	engA	USA300HOU_1412	-	GTP-binding protein EngA
1377	 33.76	0	1545919..1547094	-	391	161509643	rpsA	USA300HOU_1413	-	30S ribosomal protein S1
1378	 27.35	-1	1547659..1547775	-	38	161509644	-	USA300HOU_1414	-	hypothetical protein
1379	 34.70	0	1547806..1548465	-	219	161509645	cmk	USA300HOU_1415	-	cytidylate kinase
1380	 34.88	0	1548542..1549510	+	322	161509646	aspG	USA300HOU_1416	-	asparaginase
1381	 33.64	0	1549625..1550611	-	328	161509647	-	USA300HOU_1417	-	pyridine nucleotide-disulphide dehydrogenase
1382	 23.93	-2	1550772..1550888	-	38	161509648	-	USA300HOU_1418	-	hypothetical protein
1383	 36.48	+1	1551013..1552473	-	486	161509649	ebpS	USA300HOU_1419	-	elastin-binding protein
1384	 33.70	0	1552626..1554005	-	459	161509650	recQ2	USA300HOU_1420	-	ATP-dependent helicase RecQ
1385	 28.20	-1	1553995..1554948	-	317	161509651	-	USA300HOU_1421	-	hypothetical protein
1386	 38.55	+1	1555056..1555304	+	82	161509652	fer	USA300HOU_1422	-	ferredoxin
1387	 31.50	0	1555410..1555955	-	181	161509653	-	USA300HOU_1423	-	hypothetical protein
1388	 32.50	0	1556234..1556353	-	39	161509654	-	USA300HOU_1424	-	hypothetical protein
1389	 29.95	0	1556552..1557466	-	304	161509655	-	USA300HOU_1425	-	lipoprotein
1390	 25.12	-2	1557481..1557687	-	68	161509656	-	USA300HOU_1426	-	hypothetical protein
1391	 30.46	0	1557680..1558618	-	312	161509657	-	USA300HOU_1427	-	lipoprotein
1392	 30.50	0	1558675..1559592	-	305	161509658	-	USA300HOU_1428	-	lipoprotein
1393	 30.16	0	1560117..1561094	-	325	161509659	lukF-PV	USA300HOU_1430	-	Panton-Valentine leukocidin subunit F
1394	 31.10	0	1561096..1562034	-	312	161509660	lukS-PV	USA300HOU_1431	-	Panton-Valentine leukocidin subunit S
1395	 35.53	0	1562424..1563878	-	484	161509661	-	USA300HOU_1432	-	bacteriophage amidase
1396	 32.01	0	1563889..1564191	-	100	161509662	-	USA300HOU_1433	-	holin
1397	 31.00	0	1564327..1564626	-	99	161509663	-	USA300HOU_1434	-	hypothetical protein
1398	 31.79	0	1564829..1565218	-	129	161509664	-	USA300HOU_1435	-	hypothetical protein
1399	 33.40	0	1565218..1566684	-	488	161509665	-	USA300HOU_1436	-	hypothetical protein
1400	 35.69	0	1566684..1568594	-	636	161509666	-	USA300HOU_1437	-	hypothetical protein
1401	 35.05	0	1568610..1568900	-	96	161509667	-	USA300HOU_1438	-	hypothetical protein
1402	 30.43	0	1568900..1570483	-	527	161509668	-	USA300HOU_1439	-	hypothetical protein
1403	 30.67	0	1570492..1571316	-	274	161509669	-	USA300HOU_1440	-	hypothetical protein
1404	 36.25	0	1571316..1577516	-	2066	161509670	-	USA300HOU_1441	-	bacteriophage tail protein
1405	 33.33	0	1577530..1577688	-	52	161509671	-	USA300HOU_1442	-	hypothetical protein
1406	 31.05	0	1577730..1578080	-	116	161509672	-	USA300HOU_1443	-	hypothetical protein
1407	 36.62	+1	1578138..1578593	-	151	161509673	-	USA300HOU_1444	-	major tail protein
1408	 36.45	+1	1578685..1579326	-	213	161509674	-	USA300HOU_1445	-	major tail protein
1409	 28.54	-1	1579361..1579756	-	131	161509675	-	USA300HOU_1446	-	hypothetical protein
1410	 34.08	0	1579757..1580158	-	133	161509676	-	USA300HOU_1447	-	hypothetical protein
1411	 27.33	-1	1580155..1580487	-	110	161509677	-	USA300HOU_1448	-	hypothetical protein
1412	 31.18	0	1580499..1580777	-	92	161509678	-	USA300HOU_1449	-	DNA packaging protein
1413	 32.59	0	1580846..1582054	-	402	161509679	-	USA300HOU_1450	-	bacteriophage capsid protein
1414	 31.14	0	1582021..1582794	-	257	161509680	-	USA300HOU_1451	-	bacteriophage protease
1415	 32.69	0	1582778..1584016	-	412	161509681	-	USA300HOU_1452	-	portal protein
1416	 33.57	0	1584021..1585712	-	563	161509682	-	USA300HOU_1453	-	terminase large subunit
1417	 29.94	0	1585702..1586025	-	107	161509683	-	USA300HOU_1454	-	terminase small subunit
1418	 32.19	0	1586605..1587042	-	145	161509684	-	USA300HOU_1455	-	bacteriophage transcriptional regulator
1419	 32.68	0	1587055..1588422	-	455	161509685	-	USA300HOU_1456	-	helicase
1420	 30.58	0	1588403..1588693	-	96	161509686	-	USA300HOU_1457	-	hypothetical protein
1421	 34.96	0	1588888..1589010	+	40	161509687	-	USA300HOU_1458	-	hypothetical protein
1422	 34.80	0	1589034..1591481	-	815	161509688	-	USA300HOU_1459	-	hypothetical protein
1423	 27.36	-1	1591769..1591969	-	66	161509689	-	USA300HOU_1460	-	hypothetical protein
1424	 33.99	0	1592037..1592189	-	50	161509690	-	USA300HOU_1461	-	bacteriophage transcriptional regulator
1425	 29.97	0	1592186..1592572	-	128	161509691	-	USA300HOU_1462	-	hypothetical protein
1426	 27.43	-1	1592565..1592801	-	78	161509692	-	USA300HOU_1463	-	hypothetical protein
1427	 30.88	0	1592794..1592997	-	67	161509693	-	USA300HOU_1464	-	hypothetical protein
1428	 38.16	+1	1592994..1593200	-	68	161509694	-	USA300HOU_1465	-	hypothetical protein
1429	 34.08	0	1593237..1593773	-	178	161509695	-	USA300HOU_1466	-	hypothetical protein
1430	 38.37	+1	1593766..1594023	-	85	161509696	-	USA300HOU_1467	-	hypothetical protein
1431	 38.64	+1	1594029..1594292	-	87	161509697	-	USA300HOU_1468	-	hypothetical protein
1432	 34.83	0	1594286..1594486	-	66	161509698	-	USA300HOU_1469	-	hypothetical protein
1433	 38.37	+1	1594489..1594746	-	85	161509699	-	USA300HOU_1470	-	hypothetical protein
1434	 33.83	0	1594746..1595147	-	133	161509700	-	USA300HOU_1471	-	hypothetical protein
1435	 29.03	0	1595147..1595332	-	61	161509701	-	USA300HOU_1472	-	hypothetical protein
1436	 35.18	0	1595345..1597297	-	650	161509702	-	USA300HOU_1473	-	bacterophage DNA-directed DNA polymerase
1437	 34.41	0	1597365..1597922	-	185	161509703	-	USA300HOU_1474	-	hypothetical protein
1438	 34.62	0	1597948..1599114	-	388	161509704	-	USA300HOU_1475	-	hypothetical protein
1439	 29.20	0	1599111..1599473	-	120	161509705	-	USA300HOU_1476	-	hypothetical protein
1440	 31.80	0	1599487..1599747	-	86	161509706	-	USA300HOU_1477	-	hypothetical protein
1441	 32.34	0	1599752..1600054	-	100	161509707	-	USA300HOU_1478	-	hypothetical protein
1442	 29.25	0	1600047..1600364	-	105	161509708	-	USA300HOU_1479	-	hypothetical protein
1443	 31.44	0	1600630..1600893	-	87	161509709	-	USA300HOU_1481	-	hypothetical protein
1444	 30.09	0	1600918..1601133	-	71	161509710	-	USA300HOU_1482	-	hypothetical protein
1445	 28.33	-1	1601180..1601419	+	79	161509711	-	USA300HOU_1483	-	hypothetical protein
1446	 31.64	0	1601416..1601592	-	58	161509712	-	USA300HOU_1484	-	hypothetical protein
1447	 36.98	+1	1601676..1601867	-	63	161509713	-	USA300HOU_1485	-	bacteriophage transcriptional regulator
1448	 30.00	0	1602028..1602357	+	109	161509714	-	USA300HOU_1486	-	bacteriophage transcriptional regulator
1449	 33.77	0	1602370..1602831	+	153	161509715	-	USA300HOU_1487	-	hypothetical protein
1450	 31.26	0	1602849..1603283	+	144	161509716	-	USA300HOU_1488	-	lipoprotein
1451	 25.85	-1	1603940..1604554	-	204	161509717	-	USA300HOU_1489	-	hypothetical protein
1452	 29.77	0	1604680..1605885	+	401	161509718	-	USA300HOU_1490	-	integrase
1453	 31.40	0	1607947..1608876	-	309	161509719	-	USA300HOU_1492	-	lipoprotein
1454	 33.22	0	1609121..1610815	-	564	161509720	srrB	USA300HOU_1493	-	sensor histidine kinase SrrB
1455	 34.44	0	1610853..1611578	-	241	161509721	srrA	USA300HOU_1494	-	response regulator SrrA
1456	 33.88	0	1611711..1612448	-	245	161509722	rluB	USA300HOU_1495	-	ribosomal large subunit pseudouridine synthase B
1457	 30.56	0	1612976..1613731	-	251	161509723	scpA	USA300HOU_1496	-	hypothetical protein
1458	 32.94	0	1613799..1614305	+	168	161509724	-	USA300HOU_1497	-	hypothetical protein
1459	 33.33	0	1614383..1615270	-	295	161509725	xerD	USA300HOU_1498	-	integrase/recombinase XerD
1460	 36.00	0	1615319..1615768	-	149	161509726	-	USA300HOU_1499	-	Fur family transcriptional regulator
1461	 31.86	0	1615873..1616415	-	180	161509727	nudF	USA300HOU_1500	-	ADP-ribose diphosphatase
32.63	MEAN

3.73	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.