IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
87	 31.37	0	96963..97064	-	33	161508353	-	USA300HOU_0095	-	hypothetical protein
88	 38.91	+1	97363..98349	-	328	161508354	-	USA300HOU_0096	-	hypothetical protein
89	 26.47	-1	98658..98861	+	67	161508355	-	USA300HOU_0097	-	hypothetical protein
90	 31.65	0	98910..99206	+	98	161508356	-	USA300HOU_0098	-	hypothetical protein
91	 29.07	0	99278..100498	-	406	161508357	-	USA300HOU_0099	-	major facilitator transporter
92	 32.32	0	100927..101025	-	32	161508358	-	USA300HOU_0101	-	hypothetical protein
93	 27.64	-1	101154..102014	+	286	161508359	-	USA300HOU_0102	-	transcriptional regulator
94	 26.22	-1	102369..102902	-	177	161508360	-	USA300HOU_0103	-	hypothetical protein
95	 26.21	-1	102993..103736	+	247	161508361	-	USA300HOU_0104	-	transcriptional regulator
96	 30.18	0	104170..104772	+	200	161508362	-	USA300HOU_0105	-	hypothetical protein
97	 31.30	0	105039..108191	+	1050	161508363	-	USA300HOU_0106	-	hypothetical protein
98	 32.09	0	108248..108730	+	160	161508364	-	USA300HOU_0107	-	hypothetical protein
99	 33.33	0	108935..109921	+	328	161508365	plc	USA300HOU_0108	-	phosphatidylinositol diacylglycerol-lyase
100	 29.57	0	110142..110912	+	256	161508366	-	USA300HOU_0109	-	staphylococcal tandem lipoprotein
101	 28.48	-1	110931..111734	+	267	161508367	-	USA300HOU_0110	-	tandem lipoprotein
102	 29.96	0	111798..112568	+	256	161508368	-	USA300HOU_0111	-	tandem lipoprotein
103	 31.12	0	112635..113402	+	255	161508369	-	USA300HOU_0112	-	staphylococcal tandem lipoprotein
104	 33.65	0	113496..115733	+	745	161508370	-	USA300HOU_0113	-	xylan 1,4-beta-xylosidase
105	 37.15	+1	115884..117062	+	392	161508371	-	USA300HOU_0114	-	M20 family peptidase
106	 36.79	+1	117064..118452	+	462	161508372	-	USA300HOU_0115	-	major facilitator transporter
107	 36.09	0	118945..120612	-	555	161508373	-	USA300HOU_0116	-	PnaS family phosphate:sodium (Na+) symporter
108	 35.53	0	120932..122707	-	591	161508374	-	USA300HOU_0117	-	myosin-cross-reactive antigen
109	 30.61	0	122881..123762	-	293	161508375	-	USA300HOU_0118	-	DMT family permease
110	 29.04	0	123866..125263	+	465	161508376	-	USA300HOU_0119	-	transcription regulator GntR
111	 29.96	0	125453..125926	+	157	161508377	-	USA300HOU_0120	-	hypothetical protein
112	 34.59	0	126188..127780	+	530	161508378	lctP	USA300HOU_0121	-	LctP family L-lactate permease
113	 37.89	+1	128109..129623	-	504	161508379	spa	USA300HOU_0122	-	immunoglobulin G binding protein A
114	 27.36	-1	130008..130760	-	250	161508380	sarH1	USA300HOU_0123	-	staphylococcal accessory regulator H1
115	 36.74	+1	131129..132127	-	332	161508381	sirC	USA300HOU_0124	-	iron (Fe3+) ABC transporter membrane protein
116	 38.55	+1	132124..133119	-	331	161508382	sirB	USA300HOU_0125	-	iron (Fe3+) ABC transporter membrane protein
117	 32.62	0	133135..134109	-	324	161508383	sirA	USA300HOU_0126	-	iron (Fe3+) ABC transporter binding protein
118	 36.80	+1	134358..135338	+	326	161508384	-	USA300HOU_0127	-	pyridoxal-phosphate dependent enzyme
119	 37.39	+1	135335..136345	+	336	161508385	ocd	USA300HOU_0128	-	ornithine cyclodeaminase
120	 35.90	0	136366..138120	+	584	161508386	-	USA300HOU_0129	-	IucA/IucC family siderophore biosynthesis protein
121	 39.14	+1	138113..139369	+	418	161508387	-	USA300HOU_0130	-	major facilitator transporter
122	 36.61	+1	139359..141095	+	578	161508388	-	USA300HOU_0131	-	IucA/IucC family siderophore biosynthesis protein
123	 36.14	0	141076..142854	+	592	161508389	-	USA300HOU_0132	-	IucA/IucC family siderophore biosynthesis protein
124	 40.13	+2	142826..143605	+	259	161508390	-	USA300HOU_0133	-	HpcH/HpaI family aldolase
125	 36.66	+1	143605..144807	+	400	161508391	lysA1	USA300HOU_0134	-	diaminopimelate decarboxylase
126	 36.73	+1	144811..145575	+	254	161508392	-	USA300HOU_0135	-	hypothetical protein
127	 29.66	0	145771..146178	+	135	161508393	-	USA300HOU_0136	-	hypothetical protein
128	 31.58	0	146228..146854	+	208	161508394	-	USA300HOU_0137	-	hypothetical protein
129	 40.93	+2	147066..147842	+	258	161508395	-	USA300HOU_0138	-	acetoin reductase
130	 23.58	-2	147986..148108	+	40	161508396	-	USA300HOU_0139	-	hypothetical protein
131	 31.91	0	148178..149158	+	326	161508397	galE	USA300HOU_0140	-	UDP-glucose 4-epimerase
132	 34.78	0	149121..149813	+	230	161508398	-	USA300HOU_0141	-	glycosyltransferase
133	 33.25	0	150023..151189	+	388	161508399	-	USA300HOU_0142	-	glycosyltransferase
134	 30.51	0	151170..152408	+	412	161508400	-	USA300HOU_0143	-	hypothetical protein
135	 31.38	0	152398..153828	+	476	161508401	-	USA300HOU_0144	-	MOP superfamily multidrug/oligosaccharidyl-lipid/polysaccharide flippase transporter
136	 35.67	0	154096..154695	+	199	161508402	sodM	USA300HOU_0145	-	superoxide dismutase
137	 35.40	0	155063..155788	+	241	161508403	sasD	USA300HOU_0146	-	cell wall surface anchor protein
138	 35.71	0	155980..156735	-	251	161508404	-	USA300HOU_0147	-	transcriptional regulator
139	 37.57	+1	156971..157678	+	235	161508405	deoD1	USA300HOU_0148	-	purine nucleoside phosphorylase
140	 32.00	0	157685..159037	+	450	161508406	-	USA300HOU_0149	-	major facilitator superfamily tetracycline:cation symporter
141	 39.82	+1	159118..159780	+	220	161508407	deoC1	USA300HOU_0150	-	deoxyribose-phosphate aldolase
142	 36.81	+1	159808..160986	+	392	161508408	deoB1	USA300HOU_0151	-	phosphopentomutase
143	 37.01	+1	161117..161932	-	271	161508409	-	USA300HOU_0152	-	ABC transporter ATP-binding protein
144	 34.71	0	161929..162654	-	241	161508410	-	USA300HOU_0153	-	ABC transporter ATP-binding protein
145	 34.88	0	162731..163504	-	257	161508411	-	USA300HOU_0154	-	ABC transporter ATP-binding protein
146	 31.03	0	163718..164674	-	318	161508412	-	USA300HOU_0155	-	ABC transporter ATP-binding protein
147	 36.83	+1	164903..166447	+	514	161508413	-	USA300HOU_0156	-	hypothetical protein
148	 36.33	0	166498..168033	+	511	161508414	-	USA300HOU_0157	-	nucleotidase
149	 22.32	-2	169537..169863	+	108	161508415	-	USA300HOU_0160	-	hypothetical protein
150	 36.13	0	171101..173710	+	869	161508416	-	USA300HOU_0162	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
151	 29.90	0	174055..174723	+	222	161508417	cap5A	USA300HOU_0163	-	capsular polysaccharide biosynthesis protein Cap5A
152	 33.62	0	174739..175425	+	228	161508418	cap5B	USA300HOU_0164	-	capsular polysaccharide biosynthesis protein Cap5B
153	 31.76	0	175428..176192	+	254	161508419	cap5C	USA300HOU_0165	-	capsular polysaccharide biosynthesis protein Cap5C
154	 33.92	0	178026..179054	+	342	161508420	cap5E	USA300HOU_0167	-	capsular polysaccharide biosynthesis protein Cap5E
155	 34.86	0	179061..180176	+	371	161508421	cap5F	USA300HOU_0168	-	capsular polysaccharide biosynthesis protein Cap5F
156	 32.54	0	181307..181933	+	208	161508422	cap5H	USA300HOU_0170	-	capsular polysaccharide biosynthesis protein Cap5H
157	 29.19	0	181938..183047	+	369	161508423	cap5I	USA300HOU_0171	-	capsular polysaccharide biosynthesis protein Cap5I
158	 29.31	0	183061..184227	+	388	161508424	cap5J	USA300HOU_0172	-	capsular polysaccharide biosynthesis protein Cap5J
159	 26.78	-1	184220..185425	+	401	161508425	cap5K	USA300HOU_0173	-	capsular polysaccharide synthesis protein Cap5K
160	 35.07	0	185426..186631	+	401	161508426	cap5L	USA300HOU_0174	-	capsular polysaccharide biosynthesis protein Cap5L
161	 32.62	0	186642..187199	+	185	161508427	cap5M	USA300HOU_0175	-	capsular polysaccharide biosynthesis protein Cap5M
162	 33.56	0	187199..188086	+	295	161508428	cap5N	USA300HOU_0176	-	capsular polysaccharide biosynthesis protein Cap5N
163	 34.36	0	188140..189402	+	420	161508429	cap5O	USA300HOU_0177	-	capsular polysaccharide biosynthesis protein Cap5O
164	 36.14	0	189449..190624	+	391	161508430	cap5P	USA300HOU_0178	-	capsular polysaccharide biosynthesis protein Cap5P
165	 30.53	0	190689..191009	-	106	161508431	isdG1	USA300HOU_0179	-	heme-degrading monooxygenase IsdI
166	 32.03	0	191022..191405	-	127	161508432	-	USA300HOU_0180	-	hypothetical protein
167	 36.29	0	191832..193319	+	495	161508433	aldH2	USA300HOU_0181	-	aldehyde dehydrogenase (NAD(+))
168	 31.98	0	193965..194924	+	319	161508434	-	USA300HOU_0182	-	CDF family cation diffusion facilitator
169	 31.37	0	194986..195189	-	67	161508435	-	USA300HOU_0183	-	hypothetical protein
170	 34.11	0	195368..195880	+	170	161508436	-	USA300HOU_0184	-	hypothetical protein
171	 35.36	0	196222..196962	+	246	161508437	-	USA300HOU_0185	-	nitrite/nitrate ABC transporter ATP-binding protein
172	 36.82	+1	196976..197950	+	324	161508438	-	USA300HOU_0186	-	ABC transporter ATP-binding protein
173	 35.30	0	197947..198708	+	253	161508439	-	USA300HOU_0187	-	ABC transporter ATP-binding protein
174	 32.50	0	199970..200329	+	119	161508440	-	USA300HOU_0189	-	hypothetical protein
175	 34.98	0	200496..201527	+	343	161508441	fdh	USA300HOU_0190	-	formate dehydrogenase
176	 32.37	0	201913..203163	+	416	161508442	-	USA300HOU_0191	-	major facilitator superfamily multidrug cation symporter or antiporter
177	 35.20	0	203592..210785	+	2397	161508443	-	USA300HOU_0192	-	non-ribosomal peptide synthetase
178	 33.64	0	210798..211442	+	214	161508444	-	USA300HOU_0193	-	holo-[acyl-carrier-protein] synthase
179	 36.57	+1	211770..212264	-	164	161508445	-	USA300HOU_0194	-	hypothetical protein
180	 34.64	0	212519..213283	-	254	161508446	argB	USA300HOU_0195	-	acetylglutamate kinase
181	 38.00	+1	213299..214540	-	413	161508447	argJ	USA300HOU_0196	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
182	 35.46	0	214552..215586	-	344	161508448	argC	USA300HOU_0197	-	N-acetyl-gamma-glutamyl-phosphate reductase
183	 37.79	+1	215622..216833	-	403	161508449	argD	USA300HOU_0198	-	ornithine aminotransferase
184	 33.04	0	217059..218414	-	451	161508450	-	USA300HOU_0199	-	LIVCS family branched chain amino acid:cation symporter
185	 35.13	0	218690..219247	-	185	161508451	-	USA300HOU_0200	-	isochorismatase
186	 36.50	+1	219314..220954	-	546	161508452	-	USA300HOU_0201	-	indolepyruvate decarboxylase
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.