IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1295	 35.70	0	1433011..1433898	+	295	161509561	dapA	USA300HOU_1330	-	dihydrodipicolinate synthase
1296	 36.51	+1	1433895..1434617	+	240	161509562	dapB	USA300HOU_1331	-	dihydrodipicolinate reductase
1297	 38.06	+1	1434644..1435363	+	239	161509563	dapD	USA300HOU_1332	-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
1298	 34.72	0	1435506..1436657	+	383	161509564	-	USA300HOU_1333	-	M20D subfamily hippurate hydrolase
1299	 33.61	0	1436662..1437747	+	361	161509565	alr1	USA300HOU_1334	-	alanine racemase
1300	 33.57	0	1437737..1439002	+	421	161509566	lysA2	USA300HOU_1335	-	diaminopimelate decarboxylase
1301	 22.14	-2	1439242..1439643	-	133	161509567	-	USA300HOU_1336	-	hypothetical protein
1302	 37.81	+1	1439840..1440040	-	66	161509568	cspA	USA300HOU_1337	-	cold shock protein CspA
1303	 29.97	0	1440976..1441599	+	207	161509569	xpaC	USA300HOU_1338	-	hypothetical protein
1304	 32.63	0	1441631..1442767	+	378	161509570	telA	USA300HOU_1339	-	tellurite resistance protein
1305	 28.75	-1	1443035..1443427	-	130	161509571	-	USA300HOU_1341	-	IS1272 transposase
1306	 32.22	0	1443780..1445123	-	447	161509572	brnQ2	USA300HOU_1342	-	LIVCS family branched chain amino acid:cation symporter
1307	 31.58	0	1445348..1447234	-	628	161509573	-	USA300HOU_1343	-	hypothetical protein
1308	 31.94	0	1447248..1448039	-	263	161509574	-	USA300HOU_1344	-	nitric-oxide reductase
1309	 29.41	0	1448220..1448423	-	67	161509575	-	USA300HOU_1345	-	hypothetical protein
1310	 34.94	0	1448452..1449261	-	269	161509576	-	USA300HOU_1346	-	hypothetical protein
1311	 34.04	0	1449841..1451109	-	422	161509577	odhB	USA300HOU_1347	-	dihydrolipoamide acetyltransferase
1312	 35.83	0	1451123..1453921	-	932	161509578	sucA	USA300HOU_1348	-	alpha-ketoglutarate decarboxylase
1313	 29.20	0	1454205..1455560	-	451	161509579	-	USA300HOU_1349	-	sensor histidine kinase
1314	 33.18	0	1455557..1456216	-	219	161509580	arlR	USA300HOU_1350	-	response regulator
1315	 26.52	-1	1456478..1456609	-	43	161509581	-	USA300HOU_1351	-	hypothetical protein
1316	 26.37	-1	1456686..1456886	-	66	161509582	-	USA300HOU_1352	-	hypothetical protein
1317	 29.42	0	1457130..1457615	+	161	161509583	-	USA300HOU_1353	-	IS200 transposase
1318	 32.03	0	1457746..1458360	-	204	161509584	-	USA300HOU_1354	-	hypothetical protein
1319	 30.07	0	1458377..1459447	-	356	161509585	murG	USA300HOU_1355	-	N-acetylglucosaminyl transferase
1320	 33.73	0	1459459..1459968	-	169	161509586	-	USA300HOU_1356	-	acetyltransferase
1321	 30.72	0	1460368..1461858	-	496	161509587	ctpA	USA300HOU_1357	-	peptidase
1322	 33.78	0	1462050..1462271	-	73	161509588	-	USA300HOU_1358	-	hypothetical protein
1323	 33.93	0	1462271..1462771	-	166	161509589	-	USA300HOU_1359	-	PTS family glucose/glucoside (glc) porter component IIA
1324	 31.93	0	1462783..1463211	-	142	161509590	msrB	USA300HOU_1360	-	methionine sulfoxide reductase B
1325	 35.96	0	1463204..1463737	-	177	161509591	msrA2	USA300HOU_1361	-	methionine sulfoxide reductase A
1326	 31.55	0	1463823..1464662	-	279	161509592	-	USA300HOU_1362	-	hypothetical protein
1327	 34.58	0	1464677..1465156	-	159	161509593	dfrB	USA300HOU_1363	-	dihydrofolate reductase
1328	 33.86	0	1465356..1466312	-	318	161509594	thyA	USA300HOU_1364	-	thymidylate synthase
1329	 36.99	+1	1466736..1467173	-	145	161509595	-	USA300HOU_1365	-	hypothetical protein
1330	 34.76	0	1467189..1468313	-	374	161509596	-	USA300HOU_1366	-	hypothetical protein
1331	 32.94	0	1468351..1468602	-	83	161509597	-	USA300HOU_1367	-	hypothetical protein
1332	 32.43	0	1468614..1468835	-	73	161509598	-	USA300HOU_1368	-	hypothetical protein
1333	 31.06	0	1469053..1469757	+	234	161509599	-	USA300HOU_1369	-	hypothetical protein
1334	 44.70	+2	1469822..1469953	-	43	161509600	-	USA300HOU_1370	-	hypothetical protein
1335	 32.59	0	1470298..1470699	+	133	161509601	-	USA300HOU_1371	-	ribonuclease H
1336	 36.07	0	1470758..1502023	-	10421	161509602	ebh	USA300HOU_1372	-	extracellular matrix binding protein
1337	 32.83	0	1502421..1503812	-	463	161509603	-	USA300HOU_1373	-	major facilitator transporter
1338	 34.01	0	1503969..1505291	-	440	161509604	-	USA300HOU_1374	-	APC family amino acid-polyamine-organocation transporter
1339	 35.06	0	1505322..1506362	-	346	161509605	ilvA1	USA300HOU_1375	-	threonine dehydratase
1340	 35.39	0	1506457..1507575	-	372	161509606	ald1	USA300HOU_1376	-	alanine dehydrogenase
1341	 32.54	0	1508050..1508928	-	292	161509607	-	USA300HOU_1377	-	5'-3' exonuclease
1342	 30.49	0	1508948..1512388	-	1146	161509608	-	USA300HOU_1378	-	hypothetical protein
1343	 32.66	0	1512692..1514032	+	446	161509609	-	USA300HOU_1379	-	hypothetical protein
1344	 30.03	0	1514238..1514570	-	110	161509610	-	USA300HOU_1380	-	hypothetical protein
1345	 35.78	0	1514654..1515799	-	381	161509611	-	USA300HOU_1381	-	hypothetical protein
1346	 35.04	0	1516233..1516349	-	38	161509612	-	USA300HOU_1382	-	hypothetical protein
1347	 27.25	-1	1516450..1516794	-	114	161509613	-	USA300HOU_1383	-	hypothetical protein
1348	 31.91	0	1516808..1517371	-	187	161509614	-	USA300HOU_1384	-	hypothetical protein
1349	 29.06	0	1517364..1517714	-	116	161509615	-	USA300HOU_1385	-	hypothetical protein
1350	 21.67	-2	1517769..1517948	-	59	161509616	-	USA300HOU_1386	-	hypothetical protein
1351	 32.06	0	1518254..1518880	+	208	161509617	recU	USA300HOU_1387	-	Holliday junction-specific endonuclease
1352	 35.30	0	1518877..1521060	+	727	161509618	pbp2	USA300HOU_1388	-	penicillin-binding protein 2
1353	 27.19	-1	1521626..1521967	-	113	161509619	-	USA300HOU_1389	-	hypothetical protein
1354	 34.39	0	1521972..1522631	-	219	161509620	nth	USA300HOU_1390	-	DNA-(apurinic or apyrimidinic site) lyase
1355	 30.71	0	1522621..1523307	-	228	161509621	dnaD1	USA300HOU_1391	-	DNA replication protein DnaD
1356	 35.27	0	1523635..1524927	-	430	161509622	asnS	USA300HOU_1392	-	asparaginyl-tRNA synthetase
1357	 30.10	0	1525249..1527942	-	897	161509623	dnaQ	USA300HOU_1393	-	DNA-directed DNA polymerase III epsilon subunit
1358	 30.35	0	1527966..1528937	-	323	161509624	birA	USA300HOU_1394	-	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon transcriptional regulator
1359	 32.00	0	1528924..1530126	-	400	161509625	pcnB	USA300HOU_1395	-	tRNA CCA-pyrophosphorylase
1360	 33.25	0	1530131..1531285	-	384	161509626	-	USA300HOU_1396	-	glycosyltransferase
1361	 31.45	0	1531514..1531831	-	105	161509627	-	USA300HOU_1397	-	hypothetical protein
1362	 36.58	+1	1532168..1532875	-	235	161509628	-	USA300HOU_1398	-	hypothetical protein
1363	 28.91	0	1532920..1533507	-	195	161509629	-	USA300HOU_1399	-	hypothetical protein
1364	 30.03	0	1533497..1534072	-	191	161509630	-	USA300HOU_1400	-	hypothetical protein
1365	 30.84	0	1534086..1535330	-	414	161509631	-	USA300HOU_1401	-	hypothetical protein
1366	 35.72	0	1535337..1536635	-	432	161509632	aroA	USA300HOU_1402	-	3-phosphoshikimate 1-carboxyvinyltransferase
1367	 32.30	0	1536645..1537709	-	354	161509633	aroB	USA300HOU_1403	-	3-dehydroquinate synthase
1368	 35.22	0	1537735..1538901	-	388	161509634	aroC	USA300HOU_1404	-	chorismate synthase
1369	 20.90	-2	1539287..1539487	-	66	161509635	-	USA300HOU_1405	-	hypothetical protein
1370	 34.00	0	1539696..1540145	-	149	161509636	ndk	USA300HOU_1406	-	nucleoside-diphosphate kinase
1371	 34.69	0	1540237..1541196	-	319	161509637	gerC	USA300HOU_1407	-	trans-hexaprenyltranstransferase subunit II
1372	 34.16	0	1541198..1541923	-	241	161509638	-	USA300HOU_1408	-	ubiquinone/menaquinone biosynthesis methyltransferase
1373	 27.75	-1	1541926..1542498	-	190	161509639	-	USA300HOU_1409	-	hypothetical protein
1374	 36.63	+1	1542929..1543201	-	90	161509640	hu	USA300HOU_1410	-	DNA-binding protein HU
1375	 34.43	0	1543372..1544370	-	332	161509641	gpsA	USA300HOU_1411	-	glycerol-3-phosphate dehydrogenase (NAD(+))
1376	 35.24	0	1544387..1545697	-	436	161509642	engA	USA300HOU_1412	-	GTP-binding protein EngA
1377	 33.76	0	1545919..1547094	-	391	161509643	rpsA	USA300HOU_1413	-	30S ribosomal protein S1
1378	 27.35	-1	1547659..1547775	-	38	161509644	-	USA300HOU_1414	-	hypothetical protein
1379	 34.70	0	1547806..1548465	-	219	161509645	cmk	USA300HOU_1415	-	cytidylate kinase
1380	 34.88	0	1548542..1549510	+	322	161509646	aspG	USA300HOU_1416	-	asparaginase
1381	 33.64	0	1549625..1550611	-	328	161509647	-	USA300HOU_1417	-	pyridine nucleotide-disulphide dehydrogenase
1382	 23.93	-2	1550772..1550888	-	38	161509648	-	USA300HOU_1418	-	hypothetical protein
1383	 36.48	+1	1551013..1552473	-	486	161509649	ebpS	USA300HOU_1419	-	elastin-binding protein
1384	 33.70	0	1552626..1554005	-	459	161509650	recQ2	USA300HOU_1420	-	ATP-dependent helicase RecQ
1385	 28.20	-1	1553995..1554948	-	317	161509651	-	USA300HOU_1421	-	hypothetical protein
1386	 38.55	+1	1555056..1555304	+	82	161509652	fer	USA300HOU_1422	-	ferredoxin
1387	 31.50	0	1555410..1555955	-	181	161509653	-	USA300HOU_1423	-	hypothetical protein
1388	 32.50	0	1556234..1556353	-	39	161509654	-	USA300HOU_1424	-	hypothetical protein
1389	 29.95	0	1556552..1557466	-	304	161509655	-	USA300HOU_1425	-	lipoprotein
1390	 25.12	-2	1557481..1557687	-	68	161509656	-	USA300HOU_1426	-	hypothetical protein
1391	 30.46	0	1557680..1558618	-	312	161509657	-	USA300HOU_1427	-	lipoprotein
1392	 30.50	0	1558675..1559592	-	305	161509658	-	USA300HOU_1428	-	lipoprotein
1393	 30.16	0	1560117..1561094	-	325	161509659	lukF-PV	USA300HOU_1430	-	Panton-Valentine leukocidin subunit F
1394	 31.10	0	1561096..1562034	-	312	161509660	lukS-PV	USA300HOU_1431	-	Panton-Valentine leukocidin subunit S
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.