IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1139	 34.15	0	1245787..1246518	+	243	161509405	rnc	USA300HOU_1170	-	ribonuclease III
1140	 32.18	0	1246665..1250231	+	1188	161509406	smc	USA300HOU_1171	-	SMC superfamily ATP-binding chromosome segregation protein
1141	 34.77	0	1250231..1251481	+	416	161509407	ftsY	USA300HOU_1172	-	type I general secretory pathway protein signal recognition particle protein FtsY
1142	 30.03	0	1256028..1258634	-	868	161509408	-	USA300HOU_1173	-	hypothetical protein
1143	 33.22	0	1259035..1259919	+	294	161509409	-	USA300HOU_1174	-	ribosomal biogenesis GTPase
1144	 35.16	0	1259903..1260670	+	255	161509410	rnhB	USA300HOU_1175	-	ribonuclease H
1145	 35.56	0	1260779..1261945	+	388	161509411	sucC	USA300HOU_1176	-	succinyl-CoA synthetase subunit beta
1146	 38.17	+1	1261967..1262875	+	302	161509412	sucD	USA300HOU_1177	-	succinyl-CoA synthetase subunit alpha
1147	 28.99	0	1263069..1264220	+	383	161509413	lytN	USA300HOU_1178	-	C51 family D-Ala-D-Gly carboxypeptidase
1148	 25.78	-1	1264248..1265492	+	414	161509414	fmhC	USA300HOU_1179	-	FemAB family peptidoglycan biosynthesis protein
1149	 30.13	0	1265665..1266537	+	290	161509415	-	USA300HOU_1180	-	SMF family nucleotide-binding protein
1150	 35.07	0	1266711..1268786	+	691	161509416	topA	USA300HOU_1181	-	DNA topoisomerase I
1151	 35.78	0	1268942..1270249	+	435	161509417	gid	USA300HOU_1182	-	tRNA (uracil-5-)-methyltransferase Gid
1152	 32.55	0	1270666..1271562	+	298	161509418	xerC	USA300HOU_1183	-	tyrosine recombinase XerC
1153	 39.56	+1	1271559..1272104	+	181	161509419	clpQ	USA300HOU_1184	-	ATP-dependent protease peptidase subunit
1154	 34.97	0	1272170..1273573	+	467	161509420	clpY	USA300HOU_1185	-	ATP-dependent protease ATP-binding subunit
1155	 31.91	0	1273598..1274371	+	257	161509421	-	USA300HOU_1186	-	transcriptional repressor CodY
1156	 35.16	0	1274713..1275480	+	255	161509422	rpsB	USA300HOU_1188	-	30S ribosomal protein S2
1157	 26.32	-1	1275514..1275627	+	37	161509423	-	USA300HOU_1189	-	hypothetical protein
1158	 36.73	+1	1275662..1276543	+	293	161509424	tsf	USA300HOU_1190	-	elongation factor Ts
1159	 36.24	0	1276680..1277402	+	240	161509425	-	USA300HOU_1191	-	uridylate kinase
1160	 30.09	0	1278348..1279118	+	256	161509426	uppS	USA300HOU_1192	-	di-trans, poly-cis-decaprenylcistransferase
1161	 32.18	0	1279125..1279907	+	260	161509427	cdsA	USA300HOU_1193	-	phosphatidate cytidylyltransferase
1162	 33.26	0	1280169..1281455	+	428	161509428	-	USA300HOU_1194	-	M50 family peptidase
1163	 34.80	0	1281475..1283178	+	567	161509429	proS	USA300HOU_1195	-	prolyl-tRNA synthetase
1164	 34.75	0	1283442..1287752	+	1436	161509430	dnaE1	USA300HOU_1196	-	DNA polymerase III PolC
1165	 32.48	0	1288042..1288509	+	155	161509431	-	USA300HOU_1197	-	hypothetical protein
1166	 35.46	0	1288530..1289705	+	391	161509432	nusA	USA300HOU_1198	-	transcription elongation factor NusA
1167	 30.53	0	1289726..1290010	+	94	161509433	-	USA300HOU_1199	-	hypothetical protein
1168	 32.39	0	1290007..1290324	+	105	161509434	rplL2	USA300HOU_1200	-	ribosomal protein L7/L12
1169	 34.14	0	1290329..1292446	+	705	161509435	infB	USA300HOU_1201	-	translation initiation factor IF-2
1170	 30.48	0	1292832..1293182	+	116	161509436	rbfA	USA300HOU_1202	-	ribosome-binding factor A
1171	 32.35	0	1293351..1294268	+	305	161509437	truB	USA300HOU_1203	-	pseudouridylate synthase
1172	 33.13	0	1294283..1295254	+	323	161509438	ribC	USA300HOU_1204	-	bifunctional riboflavin kinase/FAD synthase RibC
1173	 35.93	0	1295369..1295638	+	89	161509439	rpsO	USA300HOU_1205	-	30S ribosomal protein S15
1174	 36.86	+1	1296008..1298104	+	698	161509440	pnp	USA300HOU_1206	-	polynucleotide phosphorylase/polyadenylase
1175	 33.51	0	1298340..1300013	+	557	161509441	-	USA300HOU_1207	-	beta-lactamase
1176	 33.75	0	1300260..1302638	+	792	161509442	-	USA300HOU_1208	-	FtsK/SpoIIIE family DNA translocase
1177	 31.37	0	1302643..1303356	+	237	161509443	-	USA300HOU_1209	-	GntR family transcriptional regulator
1178	 29.70	0	1303387..1304652	+	421	161509444	-	USA300HOU_1210	-	hypothetical protein
1179	 31.31	0	1304652..1305938	+	428	161509445	-	USA300HOU_1211	-	M16C subfamily peptidase
1180	 34.04	0	1305938..1306642	+	234	161509446	-	USA300HOU_1212	-	short chain dehydrogenase
1181	 33.33	0	1306747..1307574	+	275	161509447	-	USA300HOU_1213	-	hypothetical protein
1182	 30.53	0	1307593..1307985	+	130	161509448	-	USA300HOU_1214	-	transcriptional regulator
1183	 30.74	0	1308019..1308597	+	192	161509449	pgsA	USA300HOU_1215	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1184	 30.73	0	1308824..1309975	+	383	161509450	cinA	USA300HOU_1216	-	competence-damage inducible protein CinA
1185	 36.97	+1	1310140..1311183	+	347	161509451	recA	USA300HOU_1217	-	recombinase A
1186	 35.83	0	1311537..1313096	+	519	161509452	-	USA300HOU_1218	-	phosphodiesterase
1187	 27.31	-1	1313393..1313608	-	71	161509453	-	USA300HOU_1219	-	hypothetical protein
1188	 34.46	0	1313782..1314579	+	265	161509454	-	USA300HOU_1220	-	hypothetical protein
1189	 35.15	0	1314719..1316479	+	586	161509455	porA	USA300HOU_1221	-	ferredoxin dehydrogenase alpha subunit
1190	 34.03	0	1316480..1317346	+	288	161509456	porB	USA300HOU_1222	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1191	 30.61	0	1317440..1317733	+	97	161509457	-	USA300HOU_1223	-	hypothetical protein
1192	 32.88	0	1317867..1319411	+	514	161509458	miaB	USA300HOU_1224	-	2-methylthioadenine synthetase
1193	 30.33	0	1319412..1319777	+	121	161509459	-	USA300HOU_1225	-	hypothetical protein
1194	 33.94	0	1319804..1320295	+	163	161509460	-	USA300HOU_1226	-	hypothetical protein
1195	 32.07	0	1320598..1323216	+	872	161509461	mutS1	USA300HOU_1227	-	DNA mismatch repair protein
1196	 31.39	0	1323229..1325238	+	669	161509462	mutL	USA300HOU_1228	-	DNA mismatch repair protein MutL
1197	 29.10	0	1325244..1325786	+	180	161509463	glpP	USA300HOU_1229	-	glycerol uptake operon antiterminator regulatory protein
1198	 37.73	+1	1326251..1327069	+	272	161509464	glpF	USA300HOU_1230	-	MIP family major intrinsic protein channel protein
1199	 36.61	+1	1327198..1328694	+	498	161509465	glpK	USA300HOU_1231	-	glycerol kinase
1200	 34.32	0	1328804..1330525	+	573	161509466	glpD	USA300HOU_1232	-	aerobic glycerol-3-phosphate dehydrogenase
1201	 30.27	0	1330675..1331589	+	304	161509467	-	USA300HOU_1233	-	lysophophospholipase
1202	 32.16	0	1331607..1332542	+	311	161509468	-	USA300HOU_1234	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1203	 34.19	0	1332557..1332790	+	77	161509469	hfq	USA300HOU_1235	-	host factor-I protein Hfq
1204	 33.54	0	1333012..1333488	-	158	161509470	bsaA	USA300HOU_1236	-	glutathione peroxidase
1205	 31.56	0	1333600..1334838	+	412	161509471	-	USA300HOU_1237	-	GTP-binding protein
1206	 35.03	0	1334857..1336095	+	412	161509472	-	USA300HOU_1238	-	hypothetical protein
1207	 32.52	0	1336338..1336706	+	122	161509473	glnR	USA300HOU_1239	-	glutamine synthetase repressor
1208	 35.20	0	1336725..1338065	+	446	161509474	glnA	USA300HOU_1240	-	glutamate--ammonia ligase
1209	 27.27	-1	1338558..1338755	+	65	161509475	-	USA300HOU_1241	-	hypothetical protein
1210	 23.47	-2	1339456..1339668	+	70	161509476	-	USA300HOU_1242	-	hypothetical protein
1211	 24.15	-2	1339962..1340168	+	68	161509477	-	USA300HOU_1243	-	hypothetical protein
1212	 20.72	-2	1340869..1340979	+	36	161509478	-	USA300HOU_1244	-	hypothetical protein
1213	 26.88	-1	1341407..1341592	+	61	161509479	-	USA300HOU_1245	-	hypothetical protein
1214	 25.71	-1	1342104..1342208	+	34	161509480	-	USA300HOU_1246	-	hypothetical protein
1215	 26.44	-1	1342163..1342336	+	57	161509481	-	USA300HOU_1247	-	hypothetical protein
1216	 25.40	-1	1342337..1342588	+	83	161509482	-	USA300HOU_1248	-	hypothetical protein
1217	 29.06	0	1342634..1343218	+	194	161509483	-	USA300HOU_1249	-	hypothetical protein
1218	 24.90	-2	1343339..1343587	+	82	161509484	-	USA300HOU_1250	-	hypothetical protein
1219	 29.41	0	1343717..1343818	+	33	161509485	-	USA300HOU_1251	-	hypothetical protein
1220	 24.34	-2	1343864..1344130	+	88	161509486	-	USA300HOU_1252	-	hypothetical protein
1221	 23.19	-2	1344127..1344264	+	45	161509487	-	USA300HOU_1253	-	hypothetical protein
1222	 26.46	-1	1344693..1344983	+	96	161509488	-	USA300HOU_1255	-	hypothetical protein
1223	 29.23	0	1344994..1345188	+	64	161509489	-	USA300HOU_1256	-	hypothetical protein
1224	 23.68	-2	1345238..1345579	+	113	161509490	-	USA300HOU_1257	-	hypothetical protein
1225	 21.88	-2	1345586..1345777	+	63	161509491	-	USA300HOU_1258	-	hypothetical protein
1226	 32.29	0	1345761..1345856	-	31	161509492	-	USA300HOU_1259	-	hypothetical protein
1227	 33.72	0	1346326..1347351	-	341	161509493	-	USA300HOU_1260	-	hypothetical protein
1228	 22.22	-2	1347621..1347818	+	65	161509494	-	USA300HOU_1261	-	hypothetical protein
1229	 30.97	0	1347876..1349357	+	493	161509495	cls	USA300HOU_1262	-	cardiolipin synthetase
1230	 27.00	-1	1349541..1350440	+	299	161509496	-	USA300HOU_1263	-	ABC transporter ATP-binding protein
1231	 27.87	-1	1350409..1351140	+	243	161509497	-	USA300HOU_1264	-	ABC transporter ATP-binding protein
1232	 26.74	-1	1351144..1352235	+	363	161509498	-	USA300HOU_1265	-	sensor histidine kinase
1233	 29.85	0	1352232..1352834	+	200	161509499	-	USA300HOU_1266	-	response regulator
1234	 26.98	-1	1352947..1353135	-	62	161509500	-	USA300HOU_1267	-	hypothetical protein
1235	 31.84	0	1353274..1353807	+	177	161509501	nucA	USA300HOU_1268	-	thermonuclease
1236	 29.71	0	1353950..1354804	-	284	161509502	-	USA300HOU_1269	-	hypothetical protein
1237	 29.69	0	1355135..1355710	+	191	161509503	-	USA300HOU_1270	-	hypothetical protein
1238	 31.45	0	1355764..1357146	-	460	161509504	lysC1	USA300HOU_1271	-	aspartate kinase
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.