IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1098	 27.15	-1	1198983..1199273	+	96	161509364	-	USA300HOU_1127	-	hypothetical protein
1099	 30.61	0	1199356..1200162	+	268	161509365	-	USA300HOU_1128	-	hypothetical protein
1100	 34.79	0	1200186..1200803	+	205	161509366	-	USA300HOU_1129	-	hypothetical protein
1101	 35.11	0	1201024..1203777	+	917	161509367	ileS	USA300HOU_1130	-	isoleucyl-tRNA synthetase
1102	 32.08	0	1204067..1204864	+	265	161509368	-	USA300HOU_1131	-	lactoylglutathione lyase
1103	 26.83	-1	1205688..1206179	+	163	161509369	lspA	USA300HOU_1133	-	A8 signal peptidase II family protein
1104	 33.55	0	1206179..1207096	+	305	161509370	rluD	USA300HOU_1134	-	pseudouridylate synthase RluD
1105	 34.47	0	1207495..1208022	+	175	161509371	pyrR	USA300HOU_1136	-	pyrimidine regulatory protein PyrR
1106	 35.08	0	1208231..1209547	+	438	161509372	pyrP	USA300HOU_1137	-	uracil permease
1107	 31.63	0	1209575..1210456	+	293	161509373	pyrB	USA300HOU_1138	-	aspartate carbamoyltransferase catalytic subunit
1108	 35.99	0	1210471..1211748	+	425	161509374	pyrC	USA300HOU_1139	-	dihydroorotase
1109	 35.51	0	1211750..1212850	+	366	161509375	carA	USA300HOU_1140	-	carbamoyl phosphate synthase small subunit
1110	 35.70	0	1212843..1216016	+	1057	161509376	carB	USA300HOU_1141	-	carbamoyl phosphate synthase large subunit
1111	 33.76	0	1216123..1216818	+	231	161509377	pyrF	USA300HOU_1142	-	orotidine-5'-phosphate decarboxylase
1112	 33.01	0	1216818..1217429	+	203	161509378	pyrE	USA300HOU_1143	-	orotate phosphoribosyltransferase
1113	 25.35	-1	1217459..1217671	+	70	161509379	-	USA300HOU_1144	-	hypothetical protein
1114	 33.83	0	1218108..1218509	+	133	161509380	-	USA300HOU_1145	-	hypothetical protein
1115	 31.80	0	1218772..1220469	-	565	161509381	fbpA	USA300HOU_1146	-	fibrinogen-binding protein
1116	 33.49	0	1220744..1221367	+	207	161509382	gmk	USA300HOU_1147	-	guanylate kinase
1117	 32.42	0	1221367..1221585	+	72	161509383	rpoZ	USA300HOU_1148	-	DNA-directed RNA polymerase subunit omega
1118	 34.74	0	1221795..1223000	+	401	161509384	-	USA300HOU_1149	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1119	 34.79	0	1223000..1225408	+	802	161509385	priA	USA300HOU_1150	-	primosomal protein N prime
1120	 30.92	0	1225914..1226867	+	317	161509386	-	USA300HOU_1151	-	lipoprotein
1121	 33.54	0	1227532..1228020	+	162	161509387	def2	USA300HOU_1152	-	formylmethionine deformylase
1122	 35.04	0	1228013..1228948	+	311	161509388	fmt2	USA300HOU_1153	-	methionyl-tRNA formyltransferase
1123	 32.87	0	1228945..1230252	+	435	161509389	-	USA300HOU_1154	-	rRNA (cytosine-5-)-methyltransferase
1124	 33.97	0	1230255..1231349	+	364	161509390	-	USA300HOU_1155	-	hypothetical protein
1125	 32.39	0	1231356..1232099	+	247	161509391	-	USA300HOU_1156	-	PP2C protein phosphatase
1126	 33.68	0	1232096..1234090	+	664	161509392	-	USA300HOU_1157	-	non-specific serine/threonine protein kinase
1127	 31.39	0	1234318..1235193	+	291	161509393	engC	USA300HOU_1158	-	hypothetical protein
1128	 33.18	0	1235194..1235838	+	214	161509394	cfxE	USA300HOU_1159	-	ribulose-phosphate 3-epimerase
1129	 32.87	0	1235845..1236486	+	213	161509395	yloS	USA300HOU_1160	-	hypothetical protein
1130	 32.80	0	1237498..1237872	+	124	161509396	-	USA300HOU_1161	-	hypothetical protein
1131	 34.00	0	1237887..1239533	+	548	161509397	-	USA300HOU_1162	-	hypothetical protein
1132	 33.62	0	1239723..1241783	+	686	161509398	recG	USA300HOU_1163	-	DNA helicase RecG
1133	 32.29	0	1241986..1242558	+	190	161509399	-	USA300HOU_1164	-	fatty acid biosynthesis transcriptional regulator
1134	 35.06	0	1242563..1243549	+	328	161509400	-	USA300HOU_1165	-	putative glycerol-3-phosphate acyltransferase PlsX
1135	 33.76	0	1243542..1244468	+	308	161509401	fabD	USA300HOU_1166	-	malonyl CoA-acyl carrier protein transacylase
1136	 36.57	+1	1244455..1245195	+	246	161509402	fabG	USA300HOU_1167	-	3-oxoacyl-[acyl-carrier-protein] reductase
1137	 40.38	+2	1245176..1245331	+	51	161509403	-	USA300HOU_1168	-	hypothetical protein
1138	 34.19	0	1245438..1245671	+	77	161509404	hmrB	USA300HOU_1169	-	acyl carrier protein
1139	 34.15	0	1245787..1246518	+	243	161509405	rnc	USA300HOU_1170	-	ribonuclease III
1140	 32.18	0	1246665..1250231	+	1188	161509406	smc	USA300HOU_1171	-	SMC superfamily ATP-binding chromosome segregation protein
1141	 34.77	0	1250231..1251481	+	416	161509407	ftsY	USA300HOU_1172	-	type I general secretory pathway protein signal recognition particle protein FtsY
1142	 30.03	0	1256028..1258634	-	868	161509408	-	USA300HOU_1173	-	hypothetical protein
1143	 33.22	0	1259035..1259919	+	294	161509409	-	USA300HOU_1174	-	ribosomal biogenesis GTPase
1144	 35.16	0	1259903..1260670	+	255	161509410	rnhB	USA300HOU_1175	-	ribonuclease H
1145	 35.56	0	1260779..1261945	+	388	161509411	sucC	USA300HOU_1176	-	succinyl-CoA synthetase subunit beta
1146	 38.17	+1	1261967..1262875	+	302	161509412	sucD	USA300HOU_1177	-	succinyl-CoA synthetase subunit alpha
1147	 28.99	0	1263069..1264220	+	383	161509413	lytN	USA300HOU_1178	-	C51 family D-Ala-D-Gly carboxypeptidase
1148	 25.78	-1	1264248..1265492	+	414	161509414	fmhC	USA300HOU_1179	-	FemAB family peptidoglycan biosynthesis protein
1149	 30.13	0	1265665..1266537	+	290	161509415	-	USA300HOU_1180	-	SMF family nucleotide-binding protein
1150	 35.07	0	1266711..1268786	+	691	161509416	topA	USA300HOU_1181	-	DNA topoisomerase I
1151	 35.78	0	1268942..1270249	+	435	161509417	gid	USA300HOU_1182	-	tRNA (uracil-5-)-methyltransferase Gid
1152	 32.55	0	1270666..1271562	+	298	161509418	xerC	USA300HOU_1183	-	tyrosine recombinase XerC
1153	 39.56	+1	1271559..1272104	+	181	161509419	clpQ	USA300HOU_1184	-	ATP-dependent protease peptidase subunit
1154	 34.97	0	1272170..1273573	+	467	161509420	clpY	USA300HOU_1185	-	ATP-dependent protease ATP-binding subunit
1155	 31.91	0	1273598..1274371	+	257	161509421	-	USA300HOU_1186	-	transcriptional repressor CodY
1156	 35.16	0	1274713..1275480	+	255	161509422	rpsB	USA300HOU_1188	-	30S ribosomal protein S2
1157	 26.32	-1	1275514..1275627	+	37	161509423	-	USA300HOU_1189	-	hypothetical protein
1158	 36.73	+1	1275662..1276543	+	293	161509424	tsf	USA300HOU_1190	-	elongation factor Ts
1159	 36.24	0	1276680..1277402	+	240	161509425	-	USA300HOU_1191	-	uridylate kinase
1160	 30.09	0	1278348..1279118	+	256	161509426	uppS	USA300HOU_1192	-	di-trans, poly-cis-decaprenylcistransferase
1161	 32.18	0	1279125..1279907	+	260	161509427	cdsA	USA300HOU_1193	-	phosphatidate cytidylyltransferase
1162	 33.26	0	1280169..1281455	+	428	161509428	-	USA300HOU_1194	-	M50 family peptidase
1163	 34.80	0	1281475..1283178	+	567	161509429	proS	USA300HOU_1195	-	prolyl-tRNA synthetase
1164	 34.75	0	1283442..1287752	+	1436	161509430	dnaE1	USA300HOU_1196	-	DNA polymerase III PolC
1165	 32.48	0	1288042..1288509	+	155	161509431	-	USA300HOU_1197	-	hypothetical protein
1166	 35.46	0	1288530..1289705	+	391	161509432	nusA	USA300HOU_1198	-	transcription elongation factor NusA
1167	 30.53	0	1289726..1290010	+	94	161509433	-	USA300HOU_1199	-	hypothetical protein
1168	 32.39	0	1290007..1290324	+	105	161509434	rplL2	USA300HOU_1200	-	ribosomal protein L7/L12
1169	 34.14	0	1290329..1292446	+	705	161509435	infB	USA300HOU_1201	-	translation initiation factor IF-2
1170	 30.48	0	1292832..1293182	+	116	161509436	rbfA	USA300HOU_1202	-	ribosome-binding factor A
1171	 32.35	0	1293351..1294268	+	305	161509437	truB	USA300HOU_1203	-	pseudouridylate synthase
1172	 33.13	0	1294283..1295254	+	323	161509438	ribC	USA300HOU_1204	-	bifunctional riboflavin kinase/FAD synthase RibC
1173	 35.93	0	1295369..1295638	+	89	161509439	rpsO	USA300HOU_1205	-	30S ribosomal protein S15
1174	 36.86	+1	1296008..1298104	+	698	161509440	pnp	USA300HOU_1206	-	polynucleotide phosphorylase/polyadenylase
1175	 33.51	0	1298340..1300013	+	557	161509441	-	USA300HOU_1207	-	beta-lactamase
1176	 33.75	0	1300260..1302638	+	792	161509442	-	USA300HOU_1208	-	FtsK/SpoIIIE family DNA translocase
1177	 31.37	0	1302643..1303356	+	237	161509443	-	USA300HOU_1209	-	GntR family transcriptional regulator
1178	 29.70	0	1303387..1304652	+	421	161509444	-	USA300HOU_1210	-	hypothetical protein
1179	 31.31	0	1304652..1305938	+	428	161509445	-	USA300HOU_1211	-	M16C subfamily peptidase
1180	 34.04	0	1305938..1306642	+	234	161509446	-	USA300HOU_1212	-	short chain dehydrogenase
1181	 33.33	0	1306747..1307574	+	275	161509447	-	USA300HOU_1213	-	hypothetical protein
1182	 30.53	0	1307593..1307985	+	130	161509448	-	USA300HOU_1214	-	transcriptional regulator
1183	 30.74	0	1308019..1308597	+	192	161509449	pgsA	USA300HOU_1215	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1184	 30.73	0	1308824..1309975	+	383	161509450	cinA	USA300HOU_1216	-	competence-damage inducible protein CinA
1185	 36.97	+1	1310140..1311183	+	347	161509451	recA	USA300HOU_1217	-	recombinase A
1186	 35.83	0	1311537..1313096	+	519	161509452	-	USA300HOU_1218	-	phosphodiesterase
1187	 27.31	-1	1313393..1313608	-	71	161509453	-	USA300HOU_1219	-	hypothetical protein
1188	 34.46	0	1313782..1314579	+	265	161509454	-	USA300HOU_1220	-	hypothetical protein
1189	 35.15	0	1314719..1316479	+	586	161509455	porA	USA300HOU_1221	-	ferredoxin dehydrogenase alpha subunit
1190	 34.03	0	1316480..1317346	+	288	161509456	porB	USA300HOU_1222	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1191	 30.61	0	1317440..1317733	+	97	161509457	-	USA300HOU_1223	-	hypothetical protein
1192	 32.88	0	1317867..1319411	+	514	161509458	miaB	USA300HOU_1224	-	2-methylthioadenine synthetase
1193	 30.33	0	1319412..1319777	+	121	161509459	-	USA300HOU_1225	-	hypothetical protein
1194	 33.94	0	1319804..1320295	+	163	161509460	-	USA300HOU_1226	-	hypothetical protein
1195	 32.07	0	1320598..1323216	+	872	161509461	mutS1	USA300HOU_1227	-	DNA mismatch repair protein
1196	 31.39	0	1323229..1325238	+	669	161509462	mutL	USA300HOU_1228	-	DNA mismatch repair protein MutL
1197	 29.10	0	1325244..1325786	+	180	161509463	glpP	USA300HOU_1229	-	glycerol uptake operon antiterminator regulatory protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.