IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1050	 28.54	-1	1151160..1151681	+	173	161509316	-	USA300HOU_1077	-	hypothetical protein
1051	 32.57	0	1151754..1153466	+	570	161509317	dinB	USA300HOU_1078	-	hypothetical protein
1052	 33.04	0	1153476..1155824	+	782	161509318	-	USA300HOU_1079	-	recombination and DNA strand exchange inhibitor protein
1053	 33.97	0	1155997..1156311	+	104	161509319	trxA	USA300HOU_1080	-	thioredoxin
1054	 26.04	-1	1156374..1156469	-	31	161509320	-	USA300HOU_1081	-	hypothetical protein
1055	 33.16	0	1156635..1158416	+	593	161509321	uvrC	USA300HOU_1082	-	excinuclease ABC subunit C
1056	 32.03	0	1158740..1159354	+	204	161509322	sdhC	USA300HOU_1083	-	succinate dehydrogenase, cytochrome b558 subunit
1057	 38.54	+1	1159406..1161172	+	588	161509323	sdhA1	USA300HOU_1084	-	succinate dehydrogenase flavoprotein subunit
1058	 35.29	0	1161172..1161987	+	271	161509324	sdhB1	USA300HOU_1085	-	succinate dehydrogenase iron-sulfur subunit
1059	 36.58	+1	1162223..1163023	+	266	161509325	murI	USA300HOU_1086	-	glutamate racemase
1060	 32.82	0	1163035..1163622	+	195	161509326	-	USA300HOU_1087	-	hypothetical protein
1061	 31.35	0	1163615..1164118	+	167	161509327	-	USA300HOU_1088	-	hypothetical protein
1062	 23.21	-2	1164246..1164413	+	55	161509328	-	USA300HOU_1089	-	hypothetical protein
1063	 28.48	-1	1164607..1164936	+	109	161509329	-	USA300HOU_1090	-	hypothetical protein
1064	 31.62	0	1165098..1165214	+	38	161509330	-	USA300HOU_1091	-	hypothetical protein
1065	 31.09	0	1165305..1165706	-	133	161509331	-	USA300HOU_1092	-	formyl peptide receptor-like 1 inhibitory protein
1066	 26.63	-1	1166378..1166884	+	168	161509332	-	USA300HOU_1093	-	hypothetical protein
1067	 31.12	0	1167143..1167640	+	165	161509333	-	USA300HOU_1094	-	fibrinogen-binding protein
1068	 28.77	-1	1167794..1168144	+	116	161509334	-	USA300HOU_1095	-	fibrinogen-binding protein
1069	 27.96	-1	1168797..1168982	-	61	161509335	-	USA300HOU_1097	-	hypothetical protein
1070	 29.91	0	1169604..1169837	-	77	161509336	-	USA300HOU_1098	-	hypothetical protein
1071	 34.06	0	1170314..1171273	-	319	161509337	hly	USA300HOU_1099	-	alpha-hemolysin
1072	 23.81	-2	1171946..1172092	+	48	161509338	-	USA300HOU_1100	-	hypothetical protein
1073	 28.28	-1	1172076..1172273	+	65	161509339	-	USA300HOU_1101	-	hypothetical protein
1074	 30.68	0	1172718..1173434	-	238	161509340	-	USA300HOU_1103	-	superantigen-like protein
1075	 29.34	0	1173542..1174267	-	241	161509341	-	USA300HOU_1104	-	superantigen-like protein
1076	 30.58	0	1174362..1175087	-	241	161509342	-	USA300HOU_1105	-	superantigen-like protein
1077	 33.73	0	1175525..1176526	+	333	161509343	arcB2	USA300HOU_1106	-	ornithine carbamoyltransferase
1078	 33.55	0	1176549..1177481	+	310	161509344	arcC2	USA300HOU_1107	-	carbamate kinase
1079	 35.84	0	1177653..1179209	+	518	161509345	arcD2	USA300HOU_1108	-	arginine/ornithine APC transporter
1080	 28.95	0	1179517..1179744	+	75	161509346	-	USA300HOU_1109	-	hypothetical protein
1081	 31.54	0	1180049..1180996	-	315	161509347	-	USA300HOU_1110	-	TDT family tellurite/dicarboxylate transporter
1082	 28.04	-1	1181245..1181433	+	62	161509348	-	USA300HOU_1111	-	hypothetical protein
1083	 34.81	0	1182345..1182479	+	44	161509349	-	USA300HOU_1112	-	anti protein
1084	 40.00	+1	1182536..1182670	+	44	161509350	-	USA300HOU_1113	-	anti protein
1085	 30.03	0	1182794..1183489	+	231	161509351	-	USA300HOU_1114	-	hydrolase
1086	 32.43	0	1183598..1184038	-	146	161509352	-	USA300HOU_1115	-	hypothetical protein
1087	 21.90	-2	1184072..1184176	-	34	161509353	-	USA300HOU_1116	-	hypothetical protein
1088	 32.28	0	1184233..1185846	+	537	161509354	-	USA300HOU_1117	-	hypothetical protein
1089	 33.80	0	1185990..1186421	+	143	161509355	-	USA300HOU_1118	-	cell division protein MraZ
1090	 36.00	0	1186437..1187372	+	311	161509356	mraW	USA300HOU_1119	-	S-adenosyl-methyltransferase
1091	 32.09	0	1187386..1187787	+	133	161509357	ftsL	USA300HOU_1120	-	cell division protein
1092	 34.45	0	1187768..1190002	+	744	161509358	pbpA	USA300HOU_1121	-	penicillin-binding protein 1
1093	 32.19	0	1190294..1191259	+	321	161509359	mraY	USA300HOU_1122	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1094	 32.59	0	1191261..1192610	+	449	161509360	murD	USA300HOU_1123	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1095	 30.68	0	1192626..1193945	+	439	161509361	ftsQ	USA300HOU_1124	-	cell division protein FtsQ
1096	 33.19	0	1197737..1198411	+	224	161509362	-	USA300HOU_1125	-	hypothetical protein
1097	 34.93	0	1198408..1198971	+	187	161509363	-	USA300HOU_1126	-	hypothetical protein
1098	 27.15	-1	1198983..1199273	+	96	161509364	-	USA300HOU_1127	-	hypothetical protein
1099	 30.61	0	1199356..1200162	+	268	161509365	-	USA300HOU_1128	-	hypothetical protein
1100	 34.79	0	1200186..1200803	+	205	161509366	-	USA300HOU_1129	-	hypothetical protein
1101	 35.11	0	1201024..1203777	+	917	161509367	ileS	USA300HOU_1130	-	isoleucyl-tRNA synthetase
1102	 32.08	0	1204067..1204864	+	265	161509368	-	USA300HOU_1131	-	lactoylglutathione lyase
1103	 26.83	-1	1205688..1206179	+	163	161509369	lspA	USA300HOU_1133	-	A8 signal peptidase II family protein
1104	 33.55	0	1206179..1207096	+	305	161509370	rluD	USA300HOU_1134	-	pseudouridylate synthase RluD
1105	 34.47	0	1207495..1208022	+	175	161509371	pyrR	USA300HOU_1136	-	pyrimidine regulatory protein PyrR
1106	 35.08	0	1208231..1209547	+	438	161509372	pyrP	USA300HOU_1137	-	uracil permease
1107	 31.63	0	1209575..1210456	+	293	161509373	pyrB	USA300HOU_1138	-	aspartate carbamoyltransferase catalytic subunit
1108	 35.99	0	1210471..1211748	+	425	161509374	pyrC	USA300HOU_1139	-	dihydroorotase
1109	 35.51	0	1211750..1212850	+	366	161509375	carA	USA300HOU_1140	-	carbamoyl phosphate synthase small subunit
1110	 35.70	0	1212843..1216016	+	1057	161509376	carB	USA300HOU_1141	-	carbamoyl phosphate synthase large subunit
1111	 33.76	0	1216123..1216818	+	231	161509377	pyrF	USA300HOU_1142	-	orotidine-5'-phosphate decarboxylase
1112	 33.01	0	1216818..1217429	+	203	161509378	pyrE	USA300HOU_1143	-	orotate phosphoribosyltransferase
1113	 25.35	-1	1217459..1217671	+	70	161509379	-	USA300HOU_1144	-	hypothetical protein
1114	 33.83	0	1218108..1218509	+	133	161509380	-	USA300HOU_1145	-	hypothetical protein
1115	 31.80	0	1218772..1220469	-	565	161509381	fbpA	USA300HOU_1146	-	fibrinogen-binding protein
1116	 33.49	0	1220744..1221367	+	207	161509382	gmk	USA300HOU_1147	-	guanylate kinase
1117	 32.42	0	1221367..1221585	+	72	161509383	rpoZ	USA300HOU_1148	-	DNA-directed RNA polymerase subunit omega
1118	 34.74	0	1221795..1223000	+	401	161509384	-	USA300HOU_1149	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1119	 34.79	0	1223000..1225408	+	802	161509385	priA	USA300HOU_1150	-	primosomal protein N prime
1120	 30.92	0	1225914..1226867	+	317	161509386	-	USA300HOU_1151	-	lipoprotein
1121	 33.54	0	1227532..1228020	+	162	161509387	def2	USA300HOU_1152	-	formylmethionine deformylase
1122	 35.04	0	1228013..1228948	+	311	161509388	fmt2	USA300HOU_1153	-	methionyl-tRNA formyltransferase
1123	 32.87	0	1228945..1230252	+	435	161509389	-	USA300HOU_1154	-	rRNA (cytosine-5-)-methyltransferase
1124	 33.97	0	1230255..1231349	+	364	161509390	-	USA300HOU_1155	-	hypothetical protein
1125	 32.39	0	1231356..1232099	+	247	161509391	-	USA300HOU_1156	-	PP2C protein phosphatase
1126	 33.68	0	1232096..1234090	+	664	161509392	-	USA300HOU_1157	-	non-specific serine/threonine protein kinase
1127	 31.39	0	1234318..1235193	+	291	161509393	engC	USA300HOU_1158	-	hypothetical protein
1128	 33.18	0	1235194..1235838	+	214	161509394	cfxE	USA300HOU_1159	-	ribulose-phosphate 3-epimerase
1129	 32.87	0	1235845..1236486	+	213	161509395	yloS	USA300HOU_1160	-	hypothetical protein
1130	 32.80	0	1237498..1237872	+	124	161509396	-	USA300HOU_1161	-	hypothetical protein
1131	 34.00	0	1237887..1239533	+	548	161509397	-	USA300HOU_1162	-	hypothetical protein
1132	 33.62	0	1239723..1241783	+	686	161509398	recG	USA300HOU_1163	-	DNA helicase RecG
1133	 32.29	0	1241986..1242558	+	190	161509399	-	USA300HOU_1164	-	fatty acid biosynthesis transcriptional regulator
1134	 35.06	0	1242563..1243549	+	328	161509400	-	USA300HOU_1165	-	putative glycerol-3-phosphate acyltransferase PlsX
1135	 33.76	0	1243542..1244468	+	308	161509401	fabD	USA300HOU_1166	-	malonyl CoA-acyl carrier protein transacylase
1136	 36.57	+1	1244455..1245195	+	246	161509402	fabG	USA300HOU_1167	-	3-oxoacyl-[acyl-carrier-protein] reductase
1137	 40.38	+2	1245176..1245331	+	51	161509403	-	USA300HOU_1168	-	hypothetical protein
1138	 34.19	0	1245438..1245671	+	77	161509404	hmrB	USA300HOU_1169	-	acyl carrier protein
1139	 34.15	0	1245787..1246518	+	243	161509405	rnc	USA300HOU_1170	-	ribonuclease III
1140	 32.18	0	1246665..1250231	+	1188	161509406	smc	USA300HOU_1171	-	SMC superfamily ATP-binding chromosome segregation protein
1141	 34.77	0	1250231..1251481	+	416	161509407	ftsY	USA300HOU_1172	-	type I general secretory pathway protein signal recognition particle protein FtsY
1142	 30.03	0	1256028..1258634	-	868	161509408	-	USA300HOU_1173	-	hypothetical protein
1143	 33.22	0	1259035..1259919	+	294	161509409	-	USA300HOU_1174	-	ribosomal biogenesis GTPase
1144	 35.16	0	1259903..1260670	+	255	161509410	rnhB	USA300HOU_1175	-	ribonuclease H
1145	 35.56	0	1260779..1261945	+	388	161509411	sucC	USA300HOU_1176	-	succinyl-CoA synthetase subunit beta
1146	 38.17	+1	1261967..1262875	+	302	161509412	sucD	USA300HOU_1177	-	succinyl-CoA synthetase subunit alpha
1147	 28.99	0	1263069..1264220	+	383	161509413	lytN	USA300HOU_1178	-	C51 family D-Ala-D-Gly carboxypeptidase
1148	 25.78	-1	1264248..1265492	+	414	161509414	fmhC	USA300HOU_1179	-	FemAB family peptidoglycan biosynthesis protein
1149	 30.13	0	1265665..1266537	+	290	161509415	-	USA300HOU_1180	-	SMF family nucleotide-binding protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.