IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1015	 29.81	0	1107952..1108491	+	179	161509281	-	USA300HOU_1041	-	transcriptional regulator
1016	 31.14	0	1108504..1109598	+	364	161509282	potA	USA300HOU_1042	-	spermidine/putrescine ABC transporter ATP-binding protein
1017	 31.56	0	1111203..1112276	+	357	161509283	potD	USA300HOU_1043	-	spermidine/putrescine ABC transporter ATP-binding protein
1018	 31.67	0	1112350..1113369	+	339	161509284	-	USA300HOU_1044	-	hypothetical protein
1019	 29.29	0	1113652..1114071	+	139	161509285	-	USA300HOU_1045	-	hypothetical protein
1020	 20.95	-2	1114110..1114214	+	34	161509286	-	USA300HOU_1046	-	hypothetical protein
1021	 35.17	0	1117734..1119581	+	615	161509287	-	USA300HOU_1047	-	GTP-binding protein TypA
1022	 36.90	+1	1119721..1119888	-	55	161509288	-	USA300HOU_1048	-	hypothetical protein
1023	 31.88	0	1119890..1120372	-	160	161509289	-	USA300HOU_1049	-	hypothetical protein
1024	 31.52	0	1120513..1120788	+	91	161509290	-	USA300HOU_1050	-	hypothetical protein
1025	 31.23	0	1121090..1122328	+	412	161509291	-	USA300HOU_1051	-	FtsW/RodA/SpoVE family cell division protein
1026	 35.42	0	1122882..1126334	+	1150	161509292	pycA	USA300HOU_1052	-	pyruvate carboxylase
1027	 33.52	0	1126474..1127544	-	356	161509293	ctaA	USA300HOU_1053	-	cytochrome oxidase assembly protein
1028	 32.24	0	1127825..1128736	+	303	161509294	ctaB	USA300HOU_1054	-	protoheme IX farnesyltransferase
1029	 32.47	0	1128761..1129222	+	153	161509295	-	USA300HOU_1055	-	hypothetical protein
1030	 30.15	0	1129549..1130586	+	345	161509296	-	USA300HOU_1056	-	hypothetical protein
1031	 34.71	0	1130602..1131036	+	144	161509297	-	USA300HOU_1058	-	hypothetical protein
1032	 27.06	-1	1132264..1132518	+	84	161509298	-	USA300HOU_1059	-	hypothetical protein
1033	 29.74	0	1132521..1132910	-	129	161509299	-	USA300HOU_1060	-	hypothetical protein
1034	 31.49	0	1132980..1133522	+	180	161509300	-	USA300HOU_1061	-	site-specific DNA-methyltransferase (adenine-specific)
1035	 30.85	0	1133524..1134006	+	160	161509301	coaD	USA300HOU_1062	-	pantetheine-phosphate adenylyltransferase
1036	 32.19	0	1134068..1135207	-	379	161509302	-	USA300HOU_1063	-	hypothetical protein
1037	 33.52	0	1138438..1139490	-	350	161509303	isdA	USA300HOU_1064	-	iron (Fe2+)-regulated surface determinant protein IsdA
1038	 32.02	0	1139699..1140382	+	227	161509304	isdC	USA300HOU_1065	-	iron (Fe2+)-regulated surface determinant protein IsdC
1039	 28.60	-1	1140382..1141458	+	358	161509305	-	USA300HOU_1066	-	hypothetical protein
1040	 30.94	0	1141455..1142333	+	292	161509306	isdE	USA300HOU_1067	-	iron (Fe+3) ABC transporter binding protein
1041	 32.71	0	1142346..1143311	+	321	161509307	isdF	USA300HOU_1068	-	iron (Fe3+) ABC transporter membrane protein
1042	 30.56	0	1144126..1144449	+	107	161509308	isdG2	USA300HOU_1069	-	heme-degrading monooxygenase IsdG
1043	 31.48	0	1144486..1144593	+	35	161509309	-	USA300HOU_1070	-	hypothetical protein
1044	 23.23	-2	1144638..1144736	+	32	161509310	-	USA300HOU_1071	-	hypothetical protein
1045	 35.22	0	1144833..1145573	+	246	161509311	spoU/trmH	USA300HOU_1072	-	TrmH family rRNA methyltransferase
1046	 34.56	0	1145954..1147012	+	352	161509312	pheS	USA300HOU_1073	-	phenylalanyl-tRNA synthetase subunit alpha
1047	 34.83	0	1147012..1149414	+	800	161509313	pheT1	USA300HOU_1074	-	phenylalanine--tRNA ligase beta subunit
1048	 33.33	0	1149585..1150541	-	318	161509314	rnhC	USA300HOU_1075	-	ribonuclease HIII
1049	 32.21	0	1150893..1151159	+	88	161509315	-	USA300HOU_1076	-	hypothetical protein
1050	 28.54	-1	1151160..1151681	+	173	161509316	-	USA300HOU_1077	-	hypothetical protein
1051	 32.57	0	1151754..1153466	+	570	161509317	dinB	USA300HOU_1078	-	hypothetical protein
1052	 33.04	0	1153476..1155824	+	782	161509318	-	USA300HOU_1079	-	recombination and DNA strand exchange inhibitor protein
1053	 33.97	0	1155997..1156311	+	104	161509319	trxA	USA300HOU_1080	-	thioredoxin
1054	 26.04	-1	1156374..1156469	-	31	161509320	-	USA300HOU_1081	-	hypothetical protein
1055	 33.16	0	1156635..1158416	+	593	161509321	uvrC	USA300HOU_1082	-	excinuclease ABC subunit C
1056	 32.03	0	1158740..1159354	+	204	161509322	sdhC	USA300HOU_1083	-	succinate dehydrogenase, cytochrome b558 subunit
1057	 38.54	+1	1159406..1161172	+	588	161509323	sdhA1	USA300HOU_1084	-	succinate dehydrogenase flavoprotein subunit
1058	 35.29	0	1161172..1161987	+	271	161509324	sdhB1	USA300HOU_1085	-	succinate dehydrogenase iron-sulfur subunit
1059	 36.58	+1	1162223..1163023	+	266	161509325	murI	USA300HOU_1086	-	glutamate racemase
1060	 32.82	0	1163035..1163622	+	195	161509326	-	USA300HOU_1087	-	hypothetical protein
1061	 31.35	0	1163615..1164118	+	167	161509327	-	USA300HOU_1088	-	hypothetical protein
1062	 23.21	-2	1164246..1164413	+	55	161509328	-	USA300HOU_1089	-	hypothetical protein
1063	 28.48	-1	1164607..1164936	+	109	161509329	-	USA300HOU_1090	-	hypothetical protein
1064	 31.62	0	1165098..1165214	+	38	161509330	-	USA300HOU_1091	-	hypothetical protein
1065	 31.09	0	1165305..1165706	-	133	161509331	-	USA300HOU_1092	-	formyl peptide receptor-like 1 inhibitory protein
1066	 26.63	-1	1166378..1166884	+	168	161509332	-	USA300HOU_1093	-	hypothetical protein
1067	 31.12	0	1167143..1167640	+	165	161509333	-	USA300HOU_1094	-	fibrinogen-binding protein
1068	 28.77	-1	1167794..1168144	+	116	161509334	-	USA300HOU_1095	-	fibrinogen-binding protein
1069	 27.96	-1	1168797..1168982	-	61	161509335	-	USA300HOU_1097	-	hypothetical protein
1070	 29.91	0	1169604..1169837	-	77	161509336	-	USA300HOU_1098	-	hypothetical protein
1071	 34.06	0	1170314..1171273	-	319	161509337	hly	USA300HOU_1099	-	alpha-hemolysin
1072	 23.81	-2	1171946..1172092	+	48	161509338	-	USA300HOU_1100	-	hypothetical protein
1073	 28.28	-1	1172076..1172273	+	65	161509339	-	USA300HOU_1101	-	hypothetical protein
1074	 30.68	0	1172718..1173434	-	238	161509340	-	USA300HOU_1103	-	superantigen-like protein
1075	 29.34	0	1173542..1174267	-	241	161509341	-	USA300HOU_1104	-	superantigen-like protein
1076	 30.58	0	1174362..1175087	-	241	161509342	-	USA300HOU_1105	-	superantigen-like protein
1077	 33.73	0	1175525..1176526	+	333	161509343	arcB2	USA300HOU_1106	-	ornithine carbamoyltransferase
1078	 33.55	0	1176549..1177481	+	310	161509344	arcC2	USA300HOU_1107	-	carbamate kinase
1079	 35.84	0	1177653..1179209	+	518	161509345	arcD2	USA300HOU_1108	-	arginine/ornithine APC transporter
1080	 28.95	0	1179517..1179744	+	75	161509346	-	USA300HOU_1109	-	hypothetical protein
1081	 31.54	0	1180049..1180996	-	315	161509347	-	USA300HOU_1110	-	TDT family tellurite/dicarboxylate transporter
1082	 28.04	-1	1181245..1181433	+	62	161509348	-	USA300HOU_1111	-	hypothetical protein
1083	 34.81	0	1182345..1182479	+	44	161509349	-	USA300HOU_1112	-	anti protein
1084	 40.00	+1	1182536..1182670	+	44	161509350	-	USA300HOU_1113	-	anti protein
1085	 30.03	0	1182794..1183489	+	231	161509351	-	USA300HOU_1114	-	hydrolase
1086	 32.43	0	1183598..1184038	-	146	161509352	-	USA300HOU_1115	-	hypothetical protein
1087	 21.90	-2	1184072..1184176	-	34	161509353	-	USA300HOU_1116	-	hypothetical protein
1088	 32.28	0	1184233..1185846	+	537	161509354	-	USA300HOU_1117	-	hypothetical protein
1089	 33.80	0	1185990..1186421	+	143	161509355	-	USA300HOU_1118	-	cell division protein MraZ
1090	 36.00	0	1186437..1187372	+	311	161509356	mraW	USA300HOU_1119	-	S-adenosyl-methyltransferase
1091	 32.09	0	1187386..1187787	+	133	161509357	ftsL	USA300HOU_1120	-	cell division protein
1092	 34.45	0	1187768..1190002	+	744	161509358	pbpA	USA300HOU_1121	-	penicillin-binding protein 1
1093	 32.19	0	1190294..1191259	+	321	161509359	mraY	USA300HOU_1122	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1094	 32.59	0	1191261..1192610	+	449	161509360	murD	USA300HOU_1123	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1095	 30.68	0	1192626..1193945	+	439	161509361	ftsQ	USA300HOU_1124	-	cell division protein FtsQ
1096	 33.19	0	1197737..1198411	+	224	161509362	-	USA300HOU_1125	-	hypothetical protein
1097	 34.93	0	1198408..1198971	+	187	161509363	-	USA300HOU_1126	-	hypothetical protein
1098	 27.15	-1	1198983..1199273	+	96	161509364	-	USA300HOU_1127	-	hypothetical protein
1099	 30.61	0	1199356..1200162	+	268	161509365	-	USA300HOU_1128	-	hypothetical protein
1100	 34.79	0	1200186..1200803	+	205	161509366	-	USA300HOU_1129	-	hypothetical protein
1101	 35.11	0	1201024..1203777	+	917	161509367	ileS	USA300HOU_1130	-	isoleucyl-tRNA synthetase
1102	 32.08	0	1204067..1204864	+	265	161509368	-	USA300HOU_1131	-	lactoylglutathione lyase
1103	 26.83	-1	1205688..1206179	+	163	161509369	lspA	USA300HOU_1133	-	A8 signal peptidase II family protein
1104	 33.55	0	1206179..1207096	+	305	161509370	rluD	USA300HOU_1134	-	pseudouridylate synthase RluD
1105	 34.47	0	1207495..1208022	+	175	161509371	pyrR	USA300HOU_1136	-	pyrimidine regulatory protein PyrR
1106	 35.08	0	1208231..1209547	+	438	161509372	pyrP	USA300HOU_1137	-	uracil permease
1107	 31.63	0	1209575..1210456	+	293	161509373	pyrB	USA300HOU_1138	-	aspartate carbamoyltransferase catalytic subunit
1108	 35.99	0	1210471..1211748	+	425	161509374	pyrC	USA300HOU_1139	-	dihydroorotase
1109	 35.51	0	1211750..1212850	+	366	161509375	carA	USA300HOU_1140	-	carbamoyl phosphate synthase small subunit
1110	 35.70	0	1212843..1216016	+	1057	161509376	carB	USA300HOU_1141	-	carbamoyl phosphate synthase large subunit
1111	 33.76	0	1216123..1216818	+	231	161509377	pyrF	USA300HOU_1142	-	orotidine-5'-phosphate decarboxylase
1112	 33.01	0	1216818..1217429	+	203	161509378	pyrE	USA300HOU_1143	-	orotate phosphoribosyltransferase
1113	 25.35	-1	1217459..1217671	+	70	161509379	-	USA300HOU_1144	-	hypothetical protein
1114	 33.83	0	1218108..1218509	+	133	161509380	-	USA300HOU_1145	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.