IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
989	 35.96	0	1078792..1080276	+	494	161509255	purF	USA300HOU_1015	-	amidophosphoribosyltransferase
990	 35.57	0	1080269..1081297	+	342	161509256	purM	USA300HOU_1016	-	phosphoribosylaminoimidazole synthetase
991	 34.61	0	1081872..1083359	+	495	161509257	purH	USA300HOU_1017	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
992	 35.66	0	1083381..1084628	+	415	161509258	purD	USA300HOU_1018	-	phosphoribosylamine--glycine ligase
993	 31.10	0	1084893..1085699	-	268	161509259	-	USA300HOU_1019	-	ABC transporter ATP-binding protein
994	 33.26	0	1085692..1087092	-	466	161509260	-	USA300HOU_1020	-	ABC transporter ATP-binding protein
995	 37.15	+1	1087107..1087682	-	191	161509261	-	USA300HOU_1021	-	hypothetical protein
996	 28.94	0	1088552..1089847	+	431	161509262	-	USA300HOU_1022	-	hypothetical protein
997	 31.46	0	1090272..1091444	+	390	161509263	-	USA300HOU_1023	-	hypothetical protein
998	 30.57	0	1091498..1092040	+	180	161509264	-	USA300HOU_1024	-	hypothetical protein
999	 34.83	0	1092194..1092460	+	88	161509265	ptsH	USA300HOU_1025	-	phosphocarrier protein HPr
1000	 35.31	0	1092463..1094181	+	572	161509266	ptsI	USA300HOU_1026	-	PTS family phosphoenolpyruvate (PEP) porter component I
1001	 29.06	0	1094418..1094651	-	77	161509267	-	USA300HOU_1027	-	glutaredoxin
1002	 33.99	0	1094849..1096210	+	453	161509268	cydA	USA300HOU_1028	-	cytochrome d ubiquinol oxidase subunit I
1003	 30.39	0	1096207..1097226	+	339	161509269	cydB	USA300HOU_1029	-	cytochrome d ubiquinol oxidase subunit II
1004	 35.14	0	1097359..1098021	+	220	161509270	-	USA300HOU_1030	-	Trk family K+ transporter NAD+ binding protein
1005	 33.75	0	1098370..1100067	-	565	161509271	-	USA300HOU_1031	-	hypothetical protein
1006	 31.51	0	1100067..1100285	-	72	161509272	-	USA300HOU_1032	-	hypothetical protein
1007	 26.83	-1	1100314..1100436	-	40	161509273	-	USA300HOU_1033	-	hypothetical protein
1008	 35.14	0	1100766..1101317	-	183	161509274	pdf1	USA300HOU_1034	-	peptide deformylase
1009	 28.87	-1	1101682..1102308	+	208	161509275	-	USA300HOU_1035	-	hypothetical protein
1010	 37.29	+1	1102479..1103591	+	370	161509276	pdhA	USA300HOU_1036	-	pyruvate dehydrogenase (acetyl-transferring) alpha subunit
1011	 38.45	+1	1103595..1104572	+	325	161509277	phdB	USA300HOU_1037	-	pyruvate dehydrogenase (acetyl-transferring) beta subunit
1012	 37.90	+1	1104663..1105955	+	430	161509278	pdhC	USA300HOU_1038	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1013	 36.96	+1	1105959..1107365	+	468	161509279	pdhD	USA300HOU_1039	-	dihydrolipoamide dehydrogenase
1014	 32.25	0	1107533..1107808	+	91	161509280	-	USA300HOU_1040	-	hypothetical protein
1015	 29.81	0	1107952..1108491	+	179	161509281	-	USA300HOU_1041	-	transcriptional regulator
1016	 31.14	0	1108504..1109598	+	364	161509282	potA	USA300HOU_1042	-	spermidine/putrescine ABC transporter ATP-binding protein
1017	 31.56	0	1111203..1112276	+	357	161509283	potD	USA300HOU_1043	-	spermidine/putrescine ABC transporter ATP-binding protein
1018	 31.67	0	1112350..1113369	+	339	161509284	-	USA300HOU_1044	-	hypothetical protein
1019	 29.29	0	1113652..1114071	+	139	161509285	-	USA300HOU_1045	-	hypothetical protein
1020	 20.95	-2	1114110..1114214	+	34	161509286	-	USA300HOU_1046	-	hypothetical protein
1021	 35.17	0	1117734..1119581	+	615	161509287	-	USA300HOU_1047	-	GTP-binding protein TypA
1022	 36.90	+1	1119721..1119888	-	55	161509288	-	USA300HOU_1048	-	hypothetical protein
1023	 31.88	0	1119890..1120372	-	160	161509289	-	USA300HOU_1049	-	hypothetical protein
1024	 31.52	0	1120513..1120788	+	91	161509290	-	USA300HOU_1050	-	hypothetical protein
1025	 31.23	0	1121090..1122328	+	412	161509291	-	USA300HOU_1051	-	FtsW/RodA/SpoVE family cell division protein
1026	 35.42	0	1122882..1126334	+	1150	161509292	pycA	USA300HOU_1052	-	pyruvate carboxylase
1027	 33.52	0	1126474..1127544	-	356	161509293	ctaA	USA300HOU_1053	-	cytochrome oxidase assembly protein
1028	 32.24	0	1127825..1128736	+	303	161509294	ctaB	USA300HOU_1054	-	protoheme IX farnesyltransferase
1029	 32.47	0	1128761..1129222	+	153	161509295	-	USA300HOU_1055	-	hypothetical protein
1030	 30.15	0	1129549..1130586	+	345	161509296	-	USA300HOU_1056	-	hypothetical protein
1031	 34.71	0	1130602..1131036	+	144	161509297	-	USA300HOU_1058	-	hypothetical protein
1032	 27.06	-1	1132264..1132518	+	84	161509298	-	USA300HOU_1059	-	hypothetical protein
1033	 29.74	0	1132521..1132910	-	129	161509299	-	USA300HOU_1060	-	hypothetical protein
1034	 31.49	0	1132980..1133522	+	180	161509300	-	USA300HOU_1061	-	site-specific DNA-methyltransferase (adenine-specific)
1035	 30.85	0	1133524..1134006	+	160	161509301	coaD	USA300HOU_1062	-	pantetheine-phosphate adenylyltransferase
1036	 32.19	0	1134068..1135207	-	379	161509302	-	USA300HOU_1063	-	hypothetical protein
1037	 33.52	0	1138438..1139490	-	350	161509303	isdA	USA300HOU_1064	-	iron (Fe2+)-regulated surface determinant protein IsdA
1038	 32.02	0	1139699..1140382	+	227	161509304	isdC	USA300HOU_1065	-	iron (Fe2+)-regulated surface determinant protein IsdC
1039	 28.60	-1	1140382..1141458	+	358	161509305	-	USA300HOU_1066	-	hypothetical protein
1040	 30.94	0	1141455..1142333	+	292	161509306	isdE	USA300HOU_1067	-	iron (Fe+3) ABC transporter binding protein
1041	 32.71	0	1142346..1143311	+	321	161509307	isdF	USA300HOU_1068	-	iron (Fe3+) ABC transporter membrane protein
1042	 30.56	0	1144126..1144449	+	107	161509308	isdG2	USA300HOU_1069	-	heme-degrading monooxygenase IsdG
1043	 31.48	0	1144486..1144593	+	35	161509309	-	USA300HOU_1070	-	hypothetical protein
1044	 23.23	-2	1144638..1144736	+	32	161509310	-	USA300HOU_1071	-	hypothetical protein
1045	 35.22	0	1144833..1145573	+	246	161509311	spoU/trmH	USA300HOU_1072	-	TrmH family rRNA methyltransferase
1046	 34.56	0	1145954..1147012	+	352	161509312	pheS	USA300HOU_1073	-	phenylalanyl-tRNA synthetase subunit alpha
1047	 34.83	0	1147012..1149414	+	800	161509313	pheT1	USA300HOU_1074	-	phenylalanine--tRNA ligase beta subunit
1048	 33.33	0	1149585..1150541	-	318	161509314	rnhC	USA300HOU_1075	-	ribonuclease HIII
1049	 32.21	0	1150893..1151159	+	88	161509315	-	USA300HOU_1076	-	hypothetical protein
1050	 28.54	-1	1151160..1151681	+	173	161509316	-	USA300HOU_1077	-	hypothetical protein
1051	 32.57	0	1151754..1153466	+	570	161509317	dinB	USA300HOU_1078	-	hypothetical protein
1052	 33.04	0	1153476..1155824	+	782	161509318	-	USA300HOU_1079	-	recombination and DNA strand exchange inhibitor protein
1053	 33.97	0	1155997..1156311	+	104	161509319	trxA	USA300HOU_1080	-	thioredoxin
1054	 26.04	-1	1156374..1156469	-	31	161509320	-	USA300HOU_1081	-	hypothetical protein
1055	 33.16	0	1156635..1158416	+	593	161509321	uvrC	USA300HOU_1082	-	excinuclease ABC subunit C
1056	 32.03	0	1158740..1159354	+	204	161509322	sdhC	USA300HOU_1083	-	succinate dehydrogenase, cytochrome b558 subunit
1057	 38.54	+1	1159406..1161172	+	588	161509323	sdhA1	USA300HOU_1084	-	succinate dehydrogenase flavoprotein subunit
1058	 35.29	0	1161172..1161987	+	271	161509324	sdhB1	USA300HOU_1085	-	succinate dehydrogenase iron-sulfur subunit
1059	 36.58	+1	1162223..1163023	+	266	161509325	murI	USA300HOU_1086	-	glutamate racemase
1060	 32.82	0	1163035..1163622	+	195	161509326	-	USA300HOU_1087	-	hypothetical protein
1061	 31.35	0	1163615..1164118	+	167	161509327	-	USA300HOU_1088	-	hypothetical protein
1062	 23.21	-2	1164246..1164413	+	55	161509328	-	USA300HOU_1089	-	hypothetical protein
1063	 28.48	-1	1164607..1164936	+	109	161509329	-	USA300HOU_1090	-	hypothetical protein
1064	 31.62	0	1165098..1165214	+	38	161509330	-	USA300HOU_1091	-	hypothetical protein
1065	 31.09	0	1165305..1165706	-	133	161509331	-	USA300HOU_1092	-	formyl peptide receptor-like 1 inhibitory protein
1066	 26.63	-1	1166378..1166884	+	168	161509332	-	USA300HOU_1093	-	hypothetical protein
1067	 31.12	0	1167143..1167640	+	165	161509333	-	USA300HOU_1094	-	fibrinogen-binding protein
1068	 28.77	-1	1167794..1168144	+	116	161509334	-	USA300HOU_1095	-	fibrinogen-binding protein
1069	 27.96	-1	1168797..1168982	-	61	161509335	-	USA300HOU_1097	-	hypothetical protein
1070	 29.91	0	1169604..1169837	-	77	161509336	-	USA300HOU_1098	-	hypothetical protein
1071	 34.06	0	1170314..1171273	-	319	161509337	hly	USA300HOU_1099	-	alpha-hemolysin
1072	 23.81	-2	1171946..1172092	+	48	161509338	-	USA300HOU_1100	-	hypothetical protein
1073	 28.28	-1	1172076..1172273	+	65	161509339	-	USA300HOU_1101	-	hypothetical protein
1074	 30.68	0	1172718..1173434	-	238	161509340	-	USA300HOU_1103	-	superantigen-like protein
1075	 29.34	0	1173542..1174267	-	241	161509341	-	USA300HOU_1104	-	superantigen-like protein
1076	 30.58	0	1174362..1175087	-	241	161509342	-	USA300HOU_1105	-	superantigen-like protein
1077	 33.73	0	1175525..1176526	+	333	161509343	arcB2	USA300HOU_1106	-	ornithine carbamoyltransferase
1078	 33.55	0	1176549..1177481	+	310	161509344	arcC2	USA300HOU_1107	-	carbamate kinase
1079	 35.84	0	1177653..1179209	+	518	161509345	arcD2	USA300HOU_1108	-	arginine/ornithine APC transporter
1080	 28.95	0	1179517..1179744	+	75	161509346	-	USA300HOU_1109	-	hypothetical protein
1081	 31.54	0	1180049..1180996	-	315	161509347	-	USA300HOU_1110	-	TDT family tellurite/dicarboxylate transporter
1082	 28.04	-1	1181245..1181433	+	62	161509348	-	USA300HOU_1111	-	hypothetical protein
1083	 34.81	0	1182345..1182479	+	44	161509349	-	USA300HOU_1112	-	anti protein
1084	 40.00	+1	1182536..1182670	+	44	161509350	-	USA300HOU_1113	-	anti protein
1085	 30.03	0	1182794..1183489	+	231	161509351	-	USA300HOU_1114	-	hydrolase
1086	 32.43	0	1183598..1184038	-	146	161509352	-	USA300HOU_1115	-	hypothetical protein
1087	 21.90	-2	1184072..1184176	-	34	161509353	-	USA300HOU_1116	-	hypothetical protein
1088	 32.28	0	1184233..1185846	+	537	161509354	-	USA300HOU_1117	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.