IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
813	 27.30	-1	887404..888132	-	242	150393293	-	SaurJH1_0825	-	hypothetical protein
814	 27.78	-1	888730..889251	+	173	150393294	-	SaurJH1_0826	-	hypothetical protein
815	 34.65	0	889390..889920	+	176	150393295	-	SaurJH1_0827	-	GCN5-related N-acetyltransferase
816	 38.85	+1	890183..892900	+	905	150393296	-	SaurJH1_0828	-	cell wall anchor domain-containing protein
817	 29.61	-1	893121..894623	+	500	150393297	-	SaurJH1_0829	-	secreted von Willebrand factor-binding protein-like protein
818	 31.77	0	894976..895998	+	340	150393298	-	SaurJH1_0830	-	extracellular ECM and plasma binding protein
819	 29.69	0	896333..896854	+	173	150393299	-	SaurJH1_0831	-	hypothetical protein
820	 34.21	0	897195..897881	+	228	150393300	-	SaurJH1_0832	-	micrococcal nuclease
821	 39.80	+2	898238..898438	+	66	150393301	-	SaurJH1_0833	-	cold-shock protein DNA-binding
822	 30.59	0	898930..899148	-	72	150393302	-	SaurJH1_0834	-	hypothetical protein
823	 27.04	-1	899225..899494	-	89	150393303	-	SaurJH1_0835	-	hypothetical protein
824	 30.88	0	899582..900151	-	189	150393304	-	SaurJH1_0836	-	hypothetical protein
825	 28.57	-1	900339..900527	-	62	150393305	-	SaurJH1_0837	-	hypothetical protein
826	 24.90	-2	900556..900816	-	86	150393306	-	SaurJH1_0838	-	hypothetical protein
827	 33.33	0	901139..901360	+	73	150393307	-	SaurJH1_0839	-	hypothetical protein
828	 27.43	-1	901357..901593	-	78	150393308	-	SaurJH1_0840	-	hypothetical protein
829	 34.88	0	901818..902399	+	193	150393309	-	SaurJH1_0841	-	phosphoglycerate mutase
830	 30.10	0	902472..903089	-	205	150393310	-	SaurJH1_0842	-	lysine exporter protein LysE/YggA
831	 29.70	0	903244..903738	-	164	150393311	-	SaurJH1_0843	-	hypothetical protein
832	 35.93	0	904137..904559	-	140	150393312	-	SaurJH1_0844	-	OsmC family protein
833	 32.36	0	904707..905423	+	238	150393313	-	SaurJH1_0845	-	3-dehydroquinate dehydratase
834	 32.96	0	905506..906045	+	179	150393314	-	SaurJH1_0846	-	nitroreductase
835	 33.64	0	906196..906516	-	106	150393315	-	SaurJH1_0847	-	thioredoxin domain-containing protein
836	 29.41	-1	906660..907016	+	118	150393316	-	SaurJH1_0848	-	hypothetical protein
837	 33.86	0	907174..907554	+	126	150393317	-	SaurJH1_0849	-	glycine cleavage system protein H
838	 21.93	-2	907618..907731	+	37	150393318	-	SaurJH1_0850	-	hypothetical protein
839	 33.22	0	907733..908611	+	292	150393319	-	SaurJH1_0851	-	hypothetical protein
840	 30.49	0	909408..909794	+	128	150393320	-	SaurJH1_0852	-	TOPRIM domain-containing protein
841	 27.61	-1	909787..910083	+	98	150393321	-	SaurJH1_0853	-	hypothetical protein
842	 34.80	0	910333..911358	+	341	150393322	-	SaurJH1_0854	-	ABC transporter related
843	 35.20	0	911351..912046	+	231	150393323	-	SaurJH1_0855	-	binding-protein-dependent transport systems inner membrane component
844	 30.17	0	912064..912885	+	273	150393324	-	SaurJH1_0856	-	NLPA lipoprotein
845	 29.74	0	913239..913433	+	64	150393325	-	SaurJH1_0857	-	CsbD family protein
846	 33.57	0	913667..914518	-	283	150393326	-	SaurJH1_0858	-	hypothetical protein
847	 33.86	0	914846..915607	+	253	150393327	-	SaurJH1_0859	-	FeS assembly ATPase SufC
848	 34.10	0	915705..917012	+	435	150393328	-	SaurJH1_0860	-	FeS assembly protein SufD
849	 37.20	+1	917127..918368	+	413	150393329	-	SaurJH1_0861	-	SufS subfamily cysteine desulfurase
850	 36.13	0	918358..918822	+	154	150393330	-	SaurJH1_0862	-	NifU family SUF system FeS assembly protein
851	 34.41	0	918973..920370	+	465	150393331	-	SaurJH1_0863	-	FeS assembly protein SufB
852	 32.48	0	920438..921487	-	349	150393332	-	SaurJH1_0864	-	phage integrase family protein
853	 25.00	-2	921600..921779	+	59	150393333	-	SaurJH1_0865	-	excisionase
854	 29.05	-1	921759..922691	-	310	150393334	-	SaurJH1_0866	-	hypothetical protein
855	 28.24	-1	922723..923448	-	241	150393335	-	SaurJH1_0867	-	hypothetical protein
856	 26.96	-1	923476..924150	-	224	150393336	-	SaurJH1_0868	-	hypothetical protein
857	 34.83	0	924167..924499	-	110	150393337	-	SaurJH1_0869	-	helix-turn-helix domain-containing protein
858	 34.87	0	924762..924956	+	64	150393338	-	SaurJH1_0870	-	helix-turn-helix domain-containing protein
859	 35.55	0	924956..925723	+	255	150393339	-	SaurJH1_0871	-	BRO domain-containing protein
860	 35.56	0	925724..925948	+	74	150393340	-	SaurJH1_0872	-	hypothetical protein
861	 36.67	+1	925988..926437	+	149	150393341	-	SaurJH1_0873	-	phi PV83 orf 10-like protein
862	 34.23	0	926451..926672	+	73	150393342	-	SaurJH1_0874	-	phi PV83 orf 12-like protein-related protein
863	 36.42	+1	926665..926826	+	53	150393343	-	SaurJH1_0875	-	hypothetical protein
864	 32.34	0	926920..927222	+	100	150393344	-	SaurJH1_0876	-	hypothetical protein
865	 33.33	0	927227..927487	+	86	150393345	-	SaurJH1_0877	-	hypothetical protein
866	 35.14	0	927497..927718	+	73	150393346	-	SaurJH1_0878	-	phage-like protein
867	 35.42	0	927711..928334	+	207	150393347	-	SaurJH1_0879	-	hypothetical protein
868	 39.63	+1	928334..928762	+	142	150393348	-	SaurJH1_0880	-	single-strand binding protein
869	 38.37	+1	928776..929450	+	224	150393349	-	SaurJH1_0881	-	hypothetical protein
870	 29.33	-1	929447..929596	+	49	150393350	-	SaurJH1_0882	-	hypothetical protein
871	 28.37	-1	929589..929870	-	93	150393351	-	SaurJH1_0883	-	hypothetical protein
872	 33.46	0	929936..930706	+	256	150393352	-	SaurJH1_0884	-	phi ETA orf 22-like protein
873	 35.64	0	930716..931495	+	259	150393353	-	SaurJH1_0885	-	phage DnaC-like protein
874	 37.11	+1	931489..931647	+	52	150393354	-	SaurJH1_0886	-	hypothetical protein
875	 36.49	+1	931660..931881	+	73	150393355	-	SaurJH1_0887	-	hypothetical protein
876	 34.81	0	931891..932295	+	134	150393356	-	SaurJH1_0888	-	hypothetical protein
877	 30.65	0	932300..932485	+	61	150393357	-	SaurJH1_0889	-	hypothetical protein
878	 38.89	+1	932486..932791	+	101	150393358	-	SaurJH1_0890	-	hypothetical protein
879	 39.78	+2	932919..933275	+	118	150393359	-	SaurJH1_0891	-	PVL ORF-50 family protein
880	 35.80	0	933279..933521	+	80	150393360	-	SaurJH1_0892	-	phage conserved Open Reading Frame 51
881	 39.52	+1	933530..933901	+	123	150393361	-	SaurJH1_0893	-	phiPV083 ORF027-like protein
882	 37.65	+1	933894..934148	+	84	150393362	-	SaurJH1_0894	-	hypothetical protein
883	 36.26	0	934135..934305	+	56	150393363	-	SaurJH1_0895	-	hypothetical protein
884	 39.70	+1	934298..934831	+	177	150393364	-	SaurJH1_0896	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
885	 37.20	+1	934868..935074	+	68	150393365	-	SaurJH1_0897	-	hypothetical protein
886	 30.39	0	935062..935265	+	67	150393366	-	SaurJH1_0898	-	hypothetical protein
887	 29.90	0	935262..935465	+	67	150393367	-	SaurJH1_0899	-	hypothetical protein
888	 26.58	-1	935458..935694	+	78	150393368	-	SaurJH1_0900	-	hypothetical protein
889	 39.55	+1	935684..935860	+	58	150393369	-	SaurJH1_0901	-	transcriptional activator RinB
890	 36.19	0	935861..935965	+	34	150393370	-	SaurJH1_0902	-	hypothetical protein
891	 32.39	0	936031..936453	+	140	150393371	-	SaurJH1_0903	-	RinA family phage transcriptional regulator
892	 36.84	+1	936566..937135	+	189	150393372	-	SaurJH1_0904	-	terminase small subunit
893	 33.64	0	937138..938433	+	431	150393373	-	SaurJH1_0905	-	PBSX family phage terminase large subunit
894	 33.33	0	938444..939982	+	512	150393374	-	SaurJH1_0906	-	SPP1 family phage portal protein
895	 34.64	0	939989..940984	+	331	150393375	-	SaurJH1_0907	-	SPP1 family phage head morphogenesis protein
896	 34.50	0	941057..941227	+	56	150393376	-	SaurJH1_0908	-	hypothetical protein
897	 34.62	0	941336..941956	+	206	150393377	-	SaurJH1_0909	-	hypothetical protein
898	 34.77	0	941970..942944	+	324	150393378	-	SaurJH1_0910	-	phage-related head protein
899	 34.03	0	942966..943253	+	95	150393379	-	SaurJH1_0911	-	hypothetical protein
900	 35.44	0	943262..943594	+	110	150393380	-	SaurJH1_0912	-	phi Mu50B-like protein
901	 33.66	0	943591..943893	+	100	150393381	-	SaurJH1_0913	-	hypothetical protein
902	 34.48	0	943893..944240	+	115	150393382	-	SaurJH1_0914	-	HK97 family phage protein
903	 32.29	0	944252..944635	+	127	150393383	-	SaurJH1_0915	-	hypothetical protein
904	 36.60	+1	944654..945235	+	193	150393384	-	SaurJH1_0916	-	TP901-1 family phage major tail protein
905	 36.61	+1	945297..945662	+	121	150393385	-	SaurJH1_0917	-	phage-like protein
906	 33.04	0	945692..946036	+	114	150393386	-	SaurJH1_0918	-	hypothetical protein
907	 34.92	0	946053..949520	+	1155	150393387	-	SaurJH1_0919	-	phage tape measure protein
908	 30.70	0	949533..950480	+	315	150393388	-	SaurJH1_0920	-	hypothetical protein
909	 35.65	0	950489..952390	+	633	150393389	-	SaurJH1_0921	-	phage minor structural protein
910	 35.90	0	952405..954315	+	636	150393390	-	SaurJH1_0922	-	phi ETA orf 56-like protein
911	 35.58	0	954315..956138	+	607	150393391	-	SaurJH1_0923	-	phiETA ORF57-like protein-like protein
912	 36.24	0	956138..956515	+	125	150393392	-	SaurJH1_0924	-	SLT orf 129-like protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.