IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
791	 31.28	0	862155..862640	+	161	150393271	-	SaurJH1_0803	-	hexapaptide repeat-containing transferase
792	 29.65	0	862648..864087	+	479	150393272	-	SaurJH1_0804	-	TPR repeat-containing protein
793	 37.50	+1	864154..865089	+	311	150393273	-	SaurJH1_0805	-	thioredoxin reductase
794	 31.25	0	865975..866886	+	303	150393274	-	SaurJH1_0806	-	hypothetical protein
795	 33.33	0	866883..867878	+	331	150393275	-	SaurJH1_0807	-	hypothetical protein
796	 32.91	0	867989..868933	+	314	150393276	-	SaurJH1_0808	-	hypothetical protein
797	 34.35	0	869497..870084	+	195	150393277	-	SaurJH1_0809	-	ATP-dependent Clp protease, proteolytic subunit ClpP
798	 33.78	0	870327..871229	-	300	150393278	-	SaurJH1_0810	-	hypothetical protein
799	 35.24	0	871932..872561	+	209	150393279	-	SaurJH1_0811	-	hypothetical protein
800	 37.48	+1	873318..874331	+	337	150393280	-	SaurJH1_0812	-	sugar-binding domain-containing protein
801	 37.98	+1	874384..875394	+	336	150393281	-	SaurJH1_0813	-	glyceraldehyde-3-phosphate dehydrogenase, type I
802	 34.68	0	875533..876723	+	396	150393282	pgk	SaurJH1_0814	-	phosphoglycerate kinase
803	 36.88	+1	876845..877606	+	253	150393283	-	SaurJH1_0815	-	triosephosphate isomerase
804	 36.63	+1	877609..879126	+	505	150393284	-	SaurJH1_0816	-	phosphoglyceromutase
805	 36.93	+1	879256..880560	+	434	150393285	-	SaurJH1_0817	-	phosphopyruvate hydratase
806	 31.81	0	880899..881357	+	152	150393286	-	SaurJH1_0818	-	hypothetical protein
807	 30.34	0	881424..881657	+	77	150393287	secG	SaurJH1_0819	-	preprotein translocase subunit SecG
808	 33.20	0	881773..882513	+	246	150393288	-	SaurJH1_0820	-	carboxyesterase precursor-like protein
809	 34.22	0	882547..884919	+	790	150393289	-	SaurJH1_0821	-	ribonuclease R
810	 35.48	0	884941..885405	+	154	150393290	smpB	SaurJH1_0822	-	SsrA-binding protein
811	 24.07	-2	886727..887050	-	107	150393291	-	SaurJH1_0823	-	hypothetical protein
812	 36.73	+1	887066..887212	-	48	150393292	-	SaurJH1_0824	-	hypothetical protein
813	 27.30	-1	887404..888132	-	242	150393293	-	SaurJH1_0825	-	hypothetical protein
814	 27.78	-1	888730..889251	+	173	150393294	-	SaurJH1_0826	-	hypothetical protein
815	 34.65	0	889390..889920	+	176	150393295	-	SaurJH1_0827	-	GCN5-related N-acetyltransferase
816	 38.85	+1	890183..892900	+	905	150393296	-	SaurJH1_0828	-	cell wall anchor domain-containing protein
817	 29.61	-1	893121..894623	+	500	150393297	-	SaurJH1_0829	-	secreted von Willebrand factor-binding protein-like protein
818	 31.77	0	894976..895998	+	340	150393298	-	SaurJH1_0830	-	extracellular ECM and plasma binding protein
819	 29.69	0	896333..896854	+	173	150393299	-	SaurJH1_0831	-	hypothetical protein
820	 34.21	0	897195..897881	+	228	150393300	-	SaurJH1_0832	-	micrococcal nuclease
821	 39.80	+2	898238..898438	+	66	150393301	-	SaurJH1_0833	-	cold-shock protein DNA-binding
822	 30.59	0	898930..899148	-	72	150393302	-	SaurJH1_0834	-	hypothetical protein
823	 27.04	-1	899225..899494	-	89	150393303	-	SaurJH1_0835	-	hypothetical protein
824	 30.88	0	899582..900151	-	189	150393304	-	SaurJH1_0836	-	hypothetical protein
825	 28.57	-1	900339..900527	-	62	150393305	-	SaurJH1_0837	-	hypothetical protein
826	 24.90	-2	900556..900816	-	86	150393306	-	SaurJH1_0838	-	hypothetical protein
827	 33.33	0	901139..901360	+	73	150393307	-	SaurJH1_0839	-	hypothetical protein
828	 27.43	-1	901357..901593	-	78	150393308	-	SaurJH1_0840	-	hypothetical protein
829	 34.88	0	901818..902399	+	193	150393309	-	SaurJH1_0841	-	phosphoglycerate mutase
830	 30.10	0	902472..903089	-	205	150393310	-	SaurJH1_0842	-	lysine exporter protein LysE/YggA
831	 29.70	0	903244..903738	-	164	150393311	-	SaurJH1_0843	-	hypothetical protein
832	 35.93	0	904137..904559	-	140	150393312	-	SaurJH1_0844	-	OsmC family protein
833	 32.36	0	904707..905423	+	238	150393313	-	SaurJH1_0845	-	3-dehydroquinate dehydratase
834	 32.96	0	905506..906045	+	179	150393314	-	SaurJH1_0846	-	nitroreductase
835	 33.64	0	906196..906516	-	106	150393315	-	SaurJH1_0847	-	thioredoxin domain-containing protein
836	 29.41	-1	906660..907016	+	118	150393316	-	SaurJH1_0848	-	hypothetical protein
837	 33.86	0	907174..907554	+	126	150393317	-	SaurJH1_0849	-	glycine cleavage system protein H
838	 21.93	-2	907618..907731	+	37	150393318	-	SaurJH1_0850	-	hypothetical protein
839	 33.22	0	907733..908611	+	292	150393319	-	SaurJH1_0851	-	hypothetical protein
840	 30.49	0	909408..909794	+	128	150393320	-	SaurJH1_0852	-	TOPRIM domain-containing protein
841	 27.61	-1	909787..910083	+	98	150393321	-	SaurJH1_0853	-	hypothetical protein
842	 34.80	0	910333..911358	+	341	150393322	-	SaurJH1_0854	-	ABC transporter related
843	 35.20	0	911351..912046	+	231	150393323	-	SaurJH1_0855	-	binding-protein-dependent transport systems inner membrane component
844	 30.17	0	912064..912885	+	273	150393324	-	SaurJH1_0856	-	NLPA lipoprotein
845	 29.74	0	913239..913433	+	64	150393325	-	SaurJH1_0857	-	CsbD family protein
846	 33.57	0	913667..914518	-	283	150393326	-	SaurJH1_0858	-	hypothetical protein
847	 33.86	0	914846..915607	+	253	150393327	-	SaurJH1_0859	-	FeS assembly ATPase SufC
848	 34.10	0	915705..917012	+	435	150393328	-	SaurJH1_0860	-	FeS assembly protein SufD
849	 37.20	+1	917127..918368	+	413	150393329	-	SaurJH1_0861	-	SufS subfamily cysteine desulfurase
850	 36.13	0	918358..918822	+	154	150393330	-	SaurJH1_0862	-	NifU family SUF system FeS assembly protein
851	 34.41	0	918973..920370	+	465	150393331	-	SaurJH1_0863	-	FeS assembly protein SufB
852	 32.48	0	920438..921487	-	349	150393332	-	SaurJH1_0864	-	phage integrase family protein
853	 25.00	-2	921600..921779	+	59	150393333	-	SaurJH1_0865	-	excisionase
854	 29.05	-1	921759..922691	-	310	150393334	-	SaurJH1_0866	-	hypothetical protein
855	 28.24	-1	922723..923448	-	241	150393335	-	SaurJH1_0867	-	hypothetical protein
856	 26.96	-1	923476..924150	-	224	150393336	-	SaurJH1_0868	-	hypothetical protein
857	 34.83	0	924167..924499	-	110	150393337	-	SaurJH1_0869	-	helix-turn-helix domain-containing protein
858	 34.87	0	924762..924956	+	64	150393338	-	SaurJH1_0870	-	helix-turn-helix domain-containing protein
859	 35.55	0	924956..925723	+	255	150393339	-	SaurJH1_0871	-	BRO domain-containing protein
860	 35.56	0	925724..925948	+	74	150393340	-	SaurJH1_0872	-	hypothetical protein
861	 36.67	+1	925988..926437	+	149	150393341	-	SaurJH1_0873	-	phi PV83 orf 10-like protein
862	 34.23	0	926451..926672	+	73	150393342	-	SaurJH1_0874	-	phi PV83 orf 12-like protein-related protein
863	 36.42	+1	926665..926826	+	53	150393343	-	SaurJH1_0875	-	hypothetical protein
864	 32.34	0	926920..927222	+	100	150393344	-	SaurJH1_0876	-	hypothetical protein
865	 33.33	0	927227..927487	+	86	150393345	-	SaurJH1_0877	-	hypothetical protein
866	 35.14	0	927497..927718	+	73	150393346	-	SaurJH1_0878	-	phage-like protein
867	 35.42	0	927711..928334	+	207	150393347	-	SaurJH1_0879	-	hypothetical protein
868	 39.63	+1	928334..928762	+	142	150393348	-	SaurJH1_0880	-	single-strand binding protein
869	 38.37	+1	928776..929450	+	224	150393349	-	SaurJH1_0881	-	hypothetical protein
870	 29.33	-1	929447..929596	+	49	150393350	-	SaurJH1_0882	-	hypothetical protein
871	 28.37	-1	929589..929870	-	93	150393351	-	SaurJH1_0883	-	hypothetical protein
872	 33.46	0	929936..930706	+	256	150393352	-	SaurJH1_0884	-	phi ETA orf 22-like protein
873	 35.64	0	930716..931495	+	259	150393353	-	SaurJH1_0885	-	phage DnaC-like protein
874	 37.11	+1	931489..931647	+	52	150393354	-	SaurJH1_0886	-	hypothetical protein
875	 36.49	+1	931660..931881	+	73	150393355	-	SaurJH1_0887	-	hypothetical protein
876	 34.81	0	931891..932295	+	134	150393356	-	SaurJH1_0888	-	hypothetical protein
877	 30.65	0	932300..932485	+	61	150393357	-	SaurJH1_0889	-	hypothetical protein
878	 38.89	+1	932486..932791	+	101	150393358	-	SaurJH1_0890	-	hypothetical protein
879	 39.78	+2	932919..933275	+	118	150393359	-	SaurJH1_0891	-	PVL ORF-50 family protein
880	 35.80	0	933279..933521	+	80	150393360	-	SaurJH1_0892	-	phage conserved Open Reading Frame 51
881	 39.52	+1	933530..933901	+	123	150393361	-	SaurJH1_0893	-	phiPV083 ORF027-like protein
882	 37.65	+1	933894..934148	+	84	150393362	-	SaurJH1_0894	-	hypothetical protein
883	 36.26	0	934135..934305	+	56	150393363	-	SaurJH1_0895	-	hypothetical protein
884	 39.70	+1	934298..934831	+	177	150393364	-	SaurJH1_0896	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
885	 37.20	+1	934868..935074	+	68	150393365	-	SaurJH1_0897	-	hypothetical protein
886	 30.39	0	935062..935265	+	67	150393366	-	SaurJH1_0898	-	hypothetical protein
887	 29.90	0	935262..935465	+	67	150393367	-	SaurJH1_0899	-	hypothetical protein
888	 26.58	-1	935458..935694	+	78	150393368	-	SaurJH1_0900	-	hypothetical protein
889	 39.55	+1	935684..935860	+	58	150393369	-	SaurJH1_0901	-	transcriptional activator RinB
890	 36.19	0	935861..935965	+	34	150393370	-	SaurJH1_0902	-	hypothetical protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.