IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
730	 32.44	0	793609..794958	+	449	150393210	-	SaurJH1_0742	-	hypothetical protein
731	 31.79	0	795180..796019	+	279	150393211	-	SaurJH1_0743	-	2,5-didehydrogluconate reductase
732	 31.20	0	796151..797134	+	327	150393212	-	SaurJH1_0744	-	glycosyl transferase family protein
733	 30.49	0	797206..798261	-	351	150393213	-	SaurJH1_0745	-	ATPase domain-containing protein
734	 32.75	0	798261..798947	-	228	150393214	-	SaurJH1_0746	-	response regulator receiver
735	 33.97	0	798922..799395	-	157	150393215	-	SaurJH1_0747	-	DoxX family protein
736	 31.29	0	799738..800178	-	146	150393216	-	SaurJH1_0748	-	hypothetical protein
737	 25.64	-2	800458..801042	-	194	150393217	-	SaurJH1_0749	-	hypothetical protein
738	 35.99	0	801141..801854	-	237	150393218	-	SaurJH1_0750	-	radical SAM domain-containing protein
739	 32.62	0	801858..802277	-	139	150393219	-	SaurJH1_0751	-	putative 6-pyruvoyl tetrahydropterin synthase
740	 34.53	0	802279..802947	-	222	150393220	-	SaurJH1_0752	-	exsB protein
741	 33.84	0	803298..803891	+	197	150393221	-	SaurJH1_0753	-	glutamine amidotransferase of anthranilate synthase
742	 32.12	0	803875..805026	+	383	150393222	-	SaurJH1_0754	-	anthranilate synthase component I/chorismate-binding protein
743	 30.87	0	805026..805634	+	202	150393223	-	SaurJH1_0755	-	chorismate binding enzyme, putative
744	 31.51	0	805688..805906	+	72	150393224	-	SaurJH1_0756	-	hypothetical protein
745	 29.82	0	805994..806704	+	236	150393225	-	SaurJH1_0757	-	hypothetical protein
746	 34.23	0	806688..807692	+	334	150393226	-	SaurJH1_0758	-	hypothetical protein
747	 31.07	0	808166..810106	+	646	150393227	-	SaurJH1_0759	-	sulfatase
748	 33.28	0	810382..812259	+	625	150393228	-	SaurJH1_0760	-	ABC transporter related
749	 31.82	0	812271..814052	+	593	150393229	-	SaurJH1_0761	-	ATP-dependent DNA helicase RecQ
750	 33.74	0	814274..815251	+	325	150393230	-	SaurJH1_0762	-	ABC transporter related
751	 31.55	0	815244..816758	+	504	150393231	-	SaurJH1_0763	-	substrate-binding region of ABC-type glycine betaine transport system
752	 33.43	0	816998..818056	+	352	150393232	-	SaurJH1_0764	-	histidinol-phosphate aminotransferase
753	 32.23	0	818395..818937	+	180	150393233	-	SaurJH1_0765	-	hypothetical protein
754	 31.70	0	819816..820733	-	305	150393234	-	SaurJH1_0766	-	diacylglycerol kinase catalytic region
755	 34.33	0	821003..822508	-	501	150393235	-	SaurJH1_0767	-	amino acid/peptide transporter
756	 23.58	-2	822574..822819	-	81	150393236	-	SaurJH1_0768	-	hypothetical protein
757	 31.54	0	822849..823349	-	166	150393237	-	SaurJH1_0769	-	7-cyano-7-deazaguanine reductase
758	 33.10	0	823369..824235	-	288	150393238	-	SaurJH1_0770	-	hypothetical protein
759	 34.09	0	825036..825434	+	132	150393239	nrdI	SaurJH1_0771	-	ribonucleotide reductase stimulatory protein
760	 32.81	0	825397..827502	+	701	150393240	-	SaurJH1_0772	-	ribonucleotide-diphosphate reductase subunit alpha
761	 32.61	0	827620..828591	+	323	150393241	nrdF	SaurJH1_0773	-	ribonucleotide-diphosphate reductase subunit beta
762	 32.10	0	828966..829937	+	323	150393242	-	SaurJH1_0774	-	transport system permease protein
763	 29.57	-1	829924..830880	+	318	150393243	-	SaurJH1_0775	-	transport system permease protein
764	 30.31	0	830877..831638	+	253	150393244	-	SaurJH1_0776	-	ABC transporter related
765	 29.54	-1	831757..832785	+	342	150393245	-	SaurJH1_0777	-	periplasmic binding protein
766	 32.38	0	833102..833416	-	104	150393246	-	SaurJH1_0778	-	zinc finger CHY domain-containing protein
767	 35.61	0	833434..834357	-	307	150393247	-	SaurJH1_0779	-	UDP-N-acetylenolpyruvoylglucosamine reductase
768	 28.13	-1	834484..835002	-	172	150393248	-	SaurJH1_0780	-	hypothetical protein
769	 27.30	-1	835122..836000	+	292	150393249	-	SaurJH1_0781	-	hypothetical protein
770	 32.40	0	836154..836474	+	106	150393250	-	SaurJH1_0782	-	hypothetical protein
771	 34.49	0	836898..838022	+	374	150393251	-	SaurJH1_0783	-	glycerate kinase
772	 35.37	0	838209..839435	-	408	150393252	-	SaurJH1_0784	-	peptidase T
773	 33.13	0	839449..839943	-	164	150393253	-	SaurJH1_0785	-	hypothetical protein
774	 35.30	0	839961..840722	-	253	150393254	-	SaurJH1_0786	-	hypothetical protein
775	 30.44	0	840918..841988	-	356	150393255	-	SaurJH1_0787	-	diguanylate cyclase
776	 31.53	0	842306..843361	+	351	150393256	-	SaurJH1_0788	-	glycosyl transferase family protein
777	 34.11	0	843526..844167	-	213	150393257	-	SaurJH1_0789	-	hypothetical protein
778	 34.26	0	844311..845177	+	288	150393258	-	SaurJH1_0790	-	degV family protein
779	 32.59	0	845541..846623	+	360	150393259	-	SaurJH1_0791	-	helicase domain-containing protein
780	 30.96	0	846616..847290	+	224	150393260	-	SaurJH1_0792	-	hypothetical protein
781	 32.98	0	847351..847923	+	190	150393261	-	SaurJH1_0793	-	ribosomal subunit interface protein
782	 35.07	0	848337..850868	+	843	150393262	secA	SaurJH1_0794	-	preprotein translocase subunit SecA
783	 35.73	0	851183..852293	+	369	150393263	prfB	SaurJH1_0795	-	peptide chain release factor 2
784	 35.83	0	852702..853541	+	279	150393264	-	SaurJH1_0796	-	CHAP domain-containing protein
785	 28.26	-1	853715..854365	+	216	150393265	-	SaurJH1_0797	-	metal-dependent phosphohydrolase
786	 30.38	0	854362..854598	+	78	150393266	-	SaurJH1_0798	-	hypothetical protein
787	 34.99	0	854867..856852	+	661	150393267	-	SaurJH1_0799	-	excinuclease ABC subunit B
788	 35.55	0	856860..859706	+	948	150393268	-	SaurJH1_0800	-	excinuclease ABC, A subunit
789	 35.37	0	860370..861302	+	310	150393269	-	SaurJH1_0801	-	HPr kinase/phosphorylase
790	 32.86	0	861308..862147	+	279	150393270	-	SaurJH1_0802	-	prolipoprotein diacylglyceryl transferase
791	 31.28	0	862155..862640	+	161	150393271	-	SaurJH1_0803	-	hexapaptide repeat-containing transferase
792	 29.65	0	862648..864087	+	479	150393272	-	SaurJH1_0804	-	TPR repeat-containing protein
793	 37.50	+1	864154..865089	+	311	150393273	-	SaurJH1_0805	-	thioredoxin reductase
794	 31.25	0	865975..866886	+	303	150393274	-	SaurJH1_0806	-	hypothetical protein
795	 33.33	0	866883..867878	+	331	150393275	-	SaurJH1_0807	-	hypothetical protein
796	 32.91	0	867989..868933	+	314	150393276	-	SaurJH1_0808	-	hypothetical protein
797	 34.35	0	869497..870084	+	195	150393277	-	SaurJH1_0809	-	ATP-dependent Clp protease, proteolytic subunit ClpP
798	 33.78	0	870327..871229	-	300	150393278	-	SaurJH1_0810	-	hypothetical protein
799	 35.24	0	871932..872561	+	209	150393279	-	SaurJH1_0811	-	hypothetical protein
800	 37.48	+1	873318..874331	+	337	150393280	-	SaurJH1_0812	-	sugar-binding domain-containing protein
801	 37.98	+1	874384..875394	+	336	150393281	-	SaurJH1_0813	-	glyceraldehyde-3-phosphate dehydrogenase, type I
802	 34.68	0	875533..876723	+	396	150393282	pgk	SaurJH1_0814	-	phosphoglycerate kinase
803	 36.88	+1	876845..877606	+	253	150393283	-	SaurJH1_0815	-	triosephosphate isomerase
804	 36.63	+1	877609..879126	+	505	150393284	-	SaurJH1_0816	-	phosphoglyceromutase
805	 36.93	+1	879256..880560	+	434	150393285	-	SaurJH1_0817	-	phosphopyruvate hydratase
806	 31.81	0	880899..881357	+	152	150393286	-	SaurJH1_0818	-	hypothetical protein
807	 30.34	0	881424..881657	+	77	150393287	secG	SaurJH1_0819	-	preprotein translocase subunit SecG
808	 33.20	0	881773..882513	+	246	150393288	-	SaurJH1_0820	-	carboxyesterase precursor-like protein
809	 34.22	0	882547..884919	+	790	150393289	-	SaurJH1_0821	-	ribonuclease R
810	 35.48	0	884941..885405	+	154	150393290	smpB	SaurJH1_0822	-	SsrA-binding protein
811	 24.07	-2	886727..887050	-	107	150393291	-	SaurJH1_0823	-	hypothetical protein
812	 36.73	+1	887066..887212	-	48	150393292	-	SaurJH1_0824	-	hypothetical protein
813	 27.30	-1	887404..888132	-	242	150393293	-	SaurJH1_0825	-	hypothetical protein
814	 27.78	-1	888730..889251	+	173	150393294	-	SaurJH1_0826	-	hypothetical protein
815	 34.65	0	889390..889920	+	176	150393295	-	SaurJH1_0827	-	GCN5-related N-acetyltransferase
816	 38.85	+1	890183..892900	+	905	150393296	-	SaurJH1_0828	-	cell wall anchor domain-containing protein
817	 29.61	-1	893121..894623	+	500	150393297	-	SaurJH1_0829	-	secreted von Willebrand factor-binding protein-like protein
818	 31.77	0	894976..895998	+	340	150393298	-	SaurJH1_0830	-	extracellular ECM and plasma binding protein
819	 29.69	0	896333..896854	+	173	150393299	-	SaurJH1_0831	-	hypothetical protein
820	 34.21	0	897195..897881	+	228	150393300	-	SaurJH1_0832	-	micrococcal nuclease
821	 39.80	+2	898238..898438	+	66	150393301	-	SaurJH1_0833	-	cold-shock protein DNA-binding
822	 30.59	0	898930..899148	-	72	150393302	-	SaurJH1_0834	-	hypothetical protein
823	 27.04	-1	899225..899494	-	89	150393303	-	SaurJH1_0835	-	hypothetical protein
824	 30.88	0	899582..900151	-	189	150393304	-	SaurJH1_0836	-	hypothetical protein
825	 28.57	-1	900339..900527	-	62	150393305	-	SaurJH1_0837	-	hypothetical protein
826	 24.90	-2	900556..900816	-	86	150393306	-	SaurJH1_0838	-	hypothetical protein
827	 33.33	0	901139..901360	+	73	150393307	-	SaurJH1_0839	-	hypothetical protein
828	 27.43	-1	901357..901593	-	78	150393308	-	SaurJH1_0840	-	hypothetical protein
829	 34.88	0	901818..902399	+	193	150393309	-	SaurJH1_0841	-	phosphoglycerate mutase
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.