IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
692	 37.10	+1	756015..757022	+	335	150393172	-	SaurJH1_0703	-	phosphate transporter
693	 37.97	+1	757610..758407	-	265	150393173	-	SaurJH1_0704	-	CHAP domain-containing protein
694	 29.15	-1	758768..759412	+	214	150393174	-	SaurJH1_0705	-	hypothetical protein
695	 26.92	-1	760109..762259	+	716	150393175	-	SaurJH1_0706	-	helix-turn-helix domain-containing protein
696	 23.61	-2	762405..762764	+	119	150393176	-	SaurJH1_0707	-	accessory regulator A-like protein
697	 36.12	0	762954..763670	+	238	150393177	-	SaurJH1_0708	-	hypothetical protein
698	 33.54	0	763670..764143	+	157	150393178	-	SaurJH1_0709	-	hypothetical protein
699	 23.08	-2	764235..764351	+	38	150393179	-	SaurJH1_0710	-	hypothetical protein
700	 29.30	-1	764496..765140	+	214	150393180	-	SaurJH1_0711	-	hypothetical protein
701	 32.18	0	765256..766122	+	288	150393181	-	SaurJH1_0712	-	LysR substrate-binding
702	 32.26	0	766260..767474	+	404	150393182	-	SaurJH1_0713	-	major facilitator transporter
703	 27.97	-1	768057..768746	-	229	150393183	-	SaurJH1_0715	-	hypothetical protein
704	 29.95	0	768873..769316	+	147	150393184	-	SaurJH1_0716	-	GCN5-related N-acetyltransferase
705	 29.04	-1	769383..769778	+	131	150393185	-	SaurJH1_0717	-	hypothetical protein
706	 32.00	0	769916..770215	+	99	150393186	-	SaurJH1_0718	-	hypothetical protein
707	 34.07	0	770295..770837	+	180	150393187	-	SaurJH1_0719	-	GCN5-related N-acetyltransferase
708	 36.16	0	770933..771499	-	188	150393188	-	SaurJH1_0720	-	hypothetical protein
709	 33.55	0	771501..771959	-	152	150393189	-	SaurJH1_0721	-	hypothetical protein
710	 30.70	0	771962..772645	-	227	150393190	-	SaurJH1_0722	-	hypothetical protein
711	 33.22	0	772817..773692	-	291	150393191	-	SaurJH1_0723	-	undecaprenyl pyrophosphate phosphatase
712	 32.35	0	773911..775542	+	543	150393192	-	SaurJH1_0724	-	ABC transporter related
713	 32.32	0	775539..777212	+	557	150393193	-	SaurJH1_0725	-	ABC transporter related
714	 32.88	0	777339..777782	-	147	150393194	-	SaurJH1_0726	-	regulatory protein MarR
715	 30.96	0	778009..778935	+	308	150393195	-	SaurJH1_0727	-	cobalamin synthesis protein P47K
716	 33.55	0	779038..779946	+	302	150393196	-	SaurJH1_0728	-	aldo/keto reductase
717	 26.74	-1	779981..780268	+	95	150393197	-	SaurJH1_0729	-	hypothetical protein
718	 35.59	0	780551..782104	+	517	150393198	-	SaurJH1_0730	-	anion transporter
719	 34.06	0	782190..783563	+	457	150393199	-	SaurJH1_0731	-	deoxyribodipyrimidine photo-lyase
720	 30.53	0	783718..784002	-	94	150393200	-	SaurJH1_0732	-	hypothetical protein
721	 29.45	-1	783999..784616	-	205	150393201	-	SaurJH1_0733	-	hypothetical protein
722	 34.52	0	784802..785224	-	140	150393202	-	SaurJH1_0734	-	hypothetical protein
723	 33.42	0	785437..786603	+	388	150393203	-	SaurJH1_0735	-	major facilitator superfamily multidrug/H(+) antiporter
724	 27.59	-1	786896..787348	+	150	150393204	-	SaurJH1_0736	-	hypothetical protein
725	 36.02	0	787522..788004	+	160	150393205	-	SaurJH1_0737	-	ybaK/ebsC protein
726	 31.76	0	788257..789018	+	253	150393206	-	SaurJH1_0738	-	regulatory protein DeoR
727	 36.81	+1	789015..789935	+	306	150393207	-	SaurJH1_0739	-	1-phosphofructokinase
728	 37.72	+1	789941..791899	+	652	150393208	-	SaurJH1_0740	-	PTS system, fructose subfamily, IIC subunit
729	 35.96	0	792207..793388	+	393	150393209	-	SaurJH1_0741	-	N-acetylglucosamine-6-phosphate deacetylase
730	 32.44	0	793609..794958	+	449	150393210	-	SaurJH1_0742	-	hypothetical protein
731	 31.79	0	795180..796019	+	279	150393211	-	SaurJH1_0743	-	2,5-didehydrogluconate reductase
732	 31.20	0	796151..797134	+	327	150393212	-	SaurJH1_0744	-	glycosyl transferase family protein
733	 30.49	0	797206..798261	-	351	150393213	-	SaurJH1_0745	-	ATPase domain-containing protein
734	 32.75	0	798261..798947	-	228	150393214	-	SaurJH1_0746	-	response regulator receiver
735	 33.97	0	798922..799395	-	157	150393215	-	SaurJH1_0747	-	DoxX family protein
736	 31.29	0	799738..800178	-	146	150393216	-	SaurJH1_0748	-	hypothetical protein
737	 25.64	-2	800458..801042	-	194	150393217	-	SaurJH1_0749	-	hypothetical protein
738	 35.99	0	801141..801854	-	237	150393218	-	SaurJH1_0750	-	radical SAM domain-containing protein
739	 32.62	0	801858..802277	-	139	150393219	-	SaurJH1_0751	-	putative 6-pyruvoyl tetrahydropterin synthase
740	 34.53	0	802279..802947	-	222	150393220	-	SaurJH1_0752	-	exsB protein
741	 33.84	0	803298..803891	+	197	150393221	-	SaurJH1_0753	-	glutamine amidotransferase of anthranilate synthase
742	 32.12	0	803875..805026	+	383	150393222	-	SaurJH1_0754	-	anthranilate synthase component I/chorismate-binding protein
743	 30.87	0	805026..805634	+	202	150393223	-	SaurJH1_0755	-	chorismate binding enzyme, putative
744	 31.51	0	805688..805906	+	72	150393224	-	SaurJH1_0756	-	hypothetical protein
745	 29.82	0	805994..806704	+	236	150393225	-	SaurJH1_0757	-	hypothetical protein
746	 34.23	0	806688..807692	+	334	150393226	-	SaurJH1_0758	-	hypothetical protein
747	 31.07	0	808166..810106	+	646	150393227	-	SaurJH1_0759	-	sulfatase
748	 33.28	0	810382..812259	+	625	150393228	-	SaurJH1_0760	-	ABC transporter related
749	 31.82	0	812271..814052	+	593	150393229	-	SaurJH1_0761	-	ATP-dependent DNA helicase RecQ
750	 33.74	0	814274..815251	+	325	150393230	-	SaurJH1_0762	-	ABC transporter related
751	 31.55	0	815244..816758	+	504	150393231	-	SaurJH1_0763	-	substrate-binding region of ABC-type glycine betaine transport system
752	 33.43	0	816998..818056	+	352	150393232	-	SaurJH1_0764	-	histidinol-phosphate aminotransferase
753	 32.23	0	818395..818937	+	180	150393233	-	SaurJH1_0765	-	hypothetical protein
754	 31.70	0	819816..820733	-	305	150393234	-	SaurJH1_0766	-	diacylglycerol kinase catalytic region
755	 34.33	0	821003..822508	-	501	150393235	-	SaurJH1_0767	-	amino acid/peptide transporter
756	 23.58	-2	822574..822819	-	81	150393236	-	SaurJH1_0768	-	hypothetical protein
757	 31.54	0	822849..823349	-	166	150393237	-	SaurJH1_0769	-	7-cyano-7-deazaguanine reductase
758	 33.10	0	823369..824235	-	288	150393238	-	SaurJH1_0770	-	hypothetical protein
759	 34.09	0	825036..825434	+	132	150393239	nrdI	SaurJH1_0771	-	ribonucleotide reductase stimulatory protein
760	 32.81	0	825397..827502	+	701	150393240	-	SaurJH1_0772	-	ribonucleotide-diphosphate reductase subunit alpha
761	 32.61	0	827620..828591	+	323	150393241	nrdF	SaurJH1_0773	-	ribonucleotide-diphosphate reductase subunit beta
762	 32.10	0	828966..829937	+	323	150393242	-	SaurJH1_0774	-	transport system permease protein
763	 29.57	-1	829924..830880	+	318	150393243	-	SaurJH1_0775	-	transport system permease protein
764	 30.31	0	830877..831638	+	253	150393244	-	SaurJH1_0776	-	ABC transporter related
765	 29.54	-1	831757..832785	+	342	150393245	-	SaurJH1_0777	-	periplasmic binding protein
766	 32.38	0	833102..833416	-	104	150393246	-	SaurJH1_0778	-	zinc finger CHY domain-containing protein
767	 35.61	0	833434..834357	-	307	150393247	-	SaurJH1_0779	-	UDP-N-acetylenolpyruvoylglucosamine reductase
768	 28.13	-1	834484..835002	-	172	150393248	-	SaurJH1_0780	-	hypothetical protein
769	 27.30	-1	835122..836000	+	292	150393249	-	SaurJH1_0781	-	hypothetical protein
770	 32.40	0	836154..836474	+	106	150393250	-	SaurJH1_0782	-	hypothetical protein
771	 34.49	0	836898..838022	+	374	150393251	-	SaurJH1_0783	-	glycerate kinase
772	 35.37	0	838209..839435	-	408	150393252	-	SaurJH1_0784	-	peptidase T
773	 33.13	0	839449..839943	-	164	150393253	-	SaurJH1_0785	-	hypothetical protein
774	 35.30	0	839961..840722	-	253	150393254	-	SaurJH1_0786	-	hypothetical protein
775	 30.44	0	840918..841988	-	356	150393255	-	SaurJH1_0787	-	diguanylate cyclase
776	 31.53	0	842306..843361	+	351	150393256	-	SaurJH1_0788	-	glycosyl transferase family protein
777	 34.11	0	843526..844167	-	213	150393257	-	SaurJH1_0789	-	hypothetical protein
778	 34.26	0	844311..845177	+	288	150393258	-	SaurJH1_0790	-	degV family protein
779	 32.59	0	845541..846623	+	360	150393259	-	SaurJH1_0791	-	helicase domain-containing protein
780	 30.96	0	846616..847290	+	224	150393260	-	SaurJH1_0792	-	hypothetical protein
781	 32.98	0	847351..847923	+	190	150393261	-	SaurJH1_0793	-	ribosomal subunit interface protein
782	 35.07	0	848337..850868	+	843	150393262	secA	SaurJH1_0794	-	preprotein translocase subunit SecA
783	 35.73	0	851183..852293	+	369	150393263	prfB	SaurJH1_0795	-	peptide chain release factor 2
784	 35.83	0	852702..853541	+	279	150393264	-	SaurJH1_0796	-	CHAP domain-containing protein
785	 28.26	-1	853715..854365	+	216	150393265	-	SaurJH1_0797	-	metal-dependent phosphohydrolase
786	 30.38	0	854362..854598	+	78	150393266	-	SaurJH1_0798	-	hypothetical protein
787	 34.99	0	854867..856852	+	661	150393267	-	SaurJH1_0799	-	excinuclease ABC subunit B
788	 35.55	0	856860..859706	+	948	150393268	-	SaurJH1_0800	-	excinuclease ABC, A subunit
789	 35.37	0	860370..861302	+	310	150393269	-	SaurJH1_0801	-	HPr kinase/phosphorylase
790	 32.86	0	861308..862147	+	279	150393270	-	SaurJH1_0802	-	prolipoprotein diacylglyceryl transferase
791	 31.28	0	862155..862640	+	161	150393271	-	SaurJH1_0803	-	hexapaptide repeat-containing transferase
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.