IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.01   STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
657	 30.91	0	718701..720020	-	439	150393137	-	SaurJH1_0668	-	transposase IS204/IS1001/IS1096/IS1165 family protein
658	 31.61	0	721140..722069	-	309	150393138	-	SaurJH1_0669	-	periplasmic solute binding protein
659	 32.14	0	722066..722902	-	278	150393139	-	SaurJH1_0670	-	ABC-3 protein
660	 33.47	0	722896..723639	-	247	150393140	-	SaurJH1_0671	-	ABC transporter related
661	 30.39	0	723761..724405	+	214	150393141	-	SaurJH1_0672	-	iron dependent repressor
662	 30.81	0	724485..725237	-	250	150393142	-	SaurJH1_0673	-	hypothetical protein
663	 33.73	0	725473..726237	+	254	150393143	-	SaurJH1_0674	-	WecB/TagA/CpsF family glycosyl transferase
664	 34.09	0	726298..727092	-	264	150393144	-	SaurJH1_0675	-	teichoic acids export protein ATP-binding subunit
665	 31.12	0	727439..728251	+	270	150393145	-	SaurJH1_0676	-	ABC-2 type transporter
666	 32.25	0	728350..729453	+	367	150393146	-	SaurJH1_0677	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
667	 32.02	0	729450..730511	+	353	150393147	-	SaurJH1_0678	-	glycosyl transferase family protein
668	 32.33	0	730574..730972	+	132	150393148	-	SaurJH1_0679	-	glycerol-3-phosphate cytidylyltransferase
669	 34.41	0	731089..732384	-	431	150393149	-	SaurJH1_0680	-	Serine-type D-Ala-D-Ala carboxypeptidase
670	 33.10	0	732805..734532	+	575	150393150	-	SaurJH1_0681	-	ABC transporter related
671	 34.23	0	734889..736118	+	409	150393151	-	SaurJH1_0682	-	Na+ dependent nucleoside transporter
672	 23.66	-2	736373..736465	+	30	150393152	-	SaurJH1_0683	-	hypothetical protein
673	 34.05	0	736643..737476	+	277	150393153	-	SaurJH1_0684	-	hypothetical protein
674	 35.09	0	737758..738555	+	265	150393154	-	SaurJH1_0685	-	ABC transporter related
675	 35.92	0	738591..739595	+	334	150393155	-	SaurJH1_0686	-	cell wall anchor domain-containing protein
676	 35.59	0	739592..740608	+	338	150393156	-	SaurJH1_0687	-	transport system permease protein
677	 35.71	0	740842..741810	+	322	150393157	-	SaurJH1_0688	-	dihydroxyacetone kinase, DhaK subunit
678	 35.73	0	741852..742436	+	194	150393158	-	SaurJH1_0689	-	dihydroxyacetone kinase, L subunit
679	 34.71	0	742429..742791	+	120	150393159	-	SaurJH1_0690	-	hypothetical protein
680	 32.53	0	742907..743404	+	165	150393160	-	SaurJH1_0691	-	hypothetical protein
681	 32.96	0	743861..744928	+	355	150393161	-	SaurJH1_0692	-	hypothetical protein
682	 31.13	0	745079..746122	+	347	150393162	-	SaurJH1_0693	-	alpha/beta hydrolase domain-containing protein
683	 27.74	-1	746451..746879	+	142	150393163	-	SaurJH1_0694	-	hypothetical protein
684	 34.71	0	747088..747594	-	168	150393164	-	SaurJH1_0695	-	hypothetical protein
685	 31.82	0	747707..748630	+	307	150393165	-	SaurJH1_0696	-	hypothetical protein
686	 30.67	0	748646..749320	+	224	150393166	-	SaurJH1_0697	-	response regulator receiver
687	 30.74	0	749313..750353	+	346	150393167	-	SaurJH1_0698	-	ATPase domain-containing protein
688	 31.36	0	750497..751258	+	253	150393168	-	SaurJH1_0699	-	ABC transporter related
689	 28.41	-1	751248..753137	+	629	150393169	-	SaurJH1_0700	-	ABC transporter permease
690	 30.91	0	753283..754602	-	439	150393170	-	SaurJH1_0701	-	transposase IS204/IS1001/IS1096/IS1165 family protein
691	 28.16	-1	755382..755999	+	205	150393171	-	SaurJH1_0702	-	hypothetical protein
692	 37.10	+1	756015..757022	+	335	150393172	-	SaurJH1_0703	-	phosphate transporter
693	 37.97	+1	757610..758407	-	265	150393173	-	SaurJH1_0704	-	CHAP domain-containing protein
694	 29.15	-1	758768..759412	+	214	150393174	-	SaurJH1_0705	-	hypothetical protein
695	 26.92	-1	760109..762259	+	716	150393175	-	SaurJH1_0706	-	helix-turn-helix domain-containing protein
696	 23.61	-2	762405..762764	+	119	150393176	-	SaurJH1_0707	-	accessory regulator A-like protein
697	 36.12	0	762954..763670	+	238	150393177	-	SaurJH1_0708	-	hypothetical protein
698	 33.54	0	763670..764143	+	157	150393178	-	SaurJH1_0709	-	hypothetical protein
699	 23.08	-2	764235..764351	+	38	150393179	-	SaurJH1_0710	-	hypothetical protein
700	 29.30	-1	764496..765140	+	214	150393180	-	SaurJH1_0711	-	hypothetical protein
701	 32.18	0	765256..766122	+	288	150393181	-	SaurJH1_0712	-	LysR substrate-binding
702	 32.26	0	766260..767474	+	404	150393182	-	SaurJH1_0713	-	major facilitator transporter
703	 27.97	-1	768057..768746	-	229	150393183	-	SaurJH1_0715	-	hypothetical protein
704	 29.95	0	768873..769316	+	147	150393184	-	SaurJH1_0716	-	GCN5-related N-acetyltransferase
705	 29.04	-1	769383..769778	+	131	150393185	-	SaurJH1_0717	-	hypothetical protein
706	 32.00	0	769916..770215	+	99	150393186	-	SaurJH1_0718	-	hypothetical protein
707	 34.07	0	770295..770837	+	180	150393187	-	SaurJH1_0719	-	GCN5-related N-acetyltransferase
708	 36.16	0	770933..771499	-	188	150393188	-	SaurJH1_0720	-	hypothetical protein
709	 33.55	0	771501..771959	-	152	150393189	-	SaurJH1_0721	-	hypothetical protein
710	 30.70	0	771962..772645	-	227	150393190	-	SaurJH1_0722	-	hypothetical protein
711	 33.22	0	772817..773692	-	291	150393191	-	SaurJH1_0723	-	undecaprenyl pyrophosphate phosphatase
712	 32.35	0	773911..775542	+	543	150393192	-	SaurJH1_0724	-	ABC transporter related
713	 32.32	0	775539..777212	+	557	150393193	-	SaurJH1_0725	-	ABC transporter related
714	 32.88	0	777339..777782	-	147	150393194	-	SaurJH1_0726	-	regulatory protein MarR
715	 30.96	0	778009..778935	+	308	150393195	-	SaurJH1_0727	-	cobalamin synthesis protein P47K
716	 33.55	0	779038..779946	+	302	150393196	-	SaurJH1_0728	-	aldo/keto reductase
717	 26.74	-1	779981..780268	+	95	150393197	-	SaurJH1_0729	-	hypothetical protein
718	 35.59	0	780551..782104	+	517	150393198	-	SaurJH1_0730	-	anion transporter
719	 34.06	0	782190..783563	+	457	150393199	-	SaurJH1_0731	-	deoxyribodipyrimidine photo-lyase
720	 30.53	0	783718..784002	-	94	150393200	-	SaurJH1_0732	-	hypothetical protein
721	 29.45	-1	783999..784616	-	205	150393201	-	SaurJH1_0733	-	hypothetical protein
722	 34.52	0	784802..785224	-	140	150393202	-	SaurJH1_0734	-	hypothetical protein
723	 33.42	0	785437..786603	+	388	150393203	-	SaurJH1_0735	-	major facilitator superfamily multidrug/H(+) antiporter
724	 27.59	-1	786896..787348	+	150	150393204	-	SaurJH1_0736	-	hypothetical protein
725	 36.02	0	787522..788004	+	160	150393205	-	SaurJH1_0737	-	ybaK/ebsC protein
726	 31.76	0	788257..789018	+	253	150393206	-	SaurJH1_0738	-	regulatory protein DeoR
727	 36.81	+1	789015..789935	+	306	150393207	-	SaurJH1_0739	-	1-phosphofructokinase
728	 37.72	+1	789941..791899	+	652	150393208	-	SaurJH1_0740	-	PTS system, fructose subfamily, IIC subunit
729	 35.96	0	792207..793388	+	393	150393209	-	SaurJH1_0741	-	N-acetylglucosamine-6-phosphate deacetylase
730	 32.44	0	793609..794958	+	449	150393210	-	SaurJH1_0742	-	hypothetical protein
731	 31.79	0	795180..796019	+	279	150393211	-	SaurJH1_0743	-	2,5-didehydrogluconate reductase
732	 31.20	0	796151..797134	+	327	150393212	-	SaurJH1_0744	-	glycosyl transferase family protein
733	 30.49	0	797206..798261	-	351	150393213	-	SaurJH1_0745	-	ATPase domain-containing protein
734	 32.75	0	798261..798947	-	228	150393214	-	SaurJH1_0746	-	response regulator receiver
735	 33.97	0	798922..799395	-	157	150393215	-	SaurJH1_0747	-	DoxX family protein
736	 31.29	0	799738..800178	-	146	150393216	-	SaurJH1_0748	-	hypothetical protein
737	 25.64	-2	800458..801042	-	194	150393217	-	SaurJH1_0749	-	hypothetical protein
738	 35.99	0	801141..801854	-	237	150393218	-	SaurJH1_0750	-	radical SAM domain-containing protein
739	 32.62	0	801858..802277	-	139	150393219	-	SaurJH1_0751	-	putative 6-pyruvoyl tetrahydropterin synthase
740	 34.53	0	802279..802947	-	222	150393220	-	SaurJH1_0752	-	exsB protein
741	 33.84	0	803298..803891	+	197	150393221	-	SaurJH1_0753	-	glutamine amidotransferase of anthranilate synthase
742	 32.12	0	803875..805026	+	383	150393222	-	SaurJH1_0754	-	anthranilate synthase component I/chorismate-binding protein
743	 30.87	0	805026..805634	+	202	150393223	-	SaurJH1_0755	-	chorismate binding enzyme, putative
744	 31.51	0	805688..805906	+	72	150393224	-	SaurJH1_0756	-	hypothetical protein
745	 29.82	0	805994..806704	+	236	150393225	-	SaurJH1_0757	-	hypothetical protein
746	 34.23	0	806688..807692	+	334	150393226	-	SaurJH1_0758	-	hypothetical protein
747	 31.07	0	808166..810106	+	646	150393227	-	SaurJH1_0759	-	sulfatase
748	 33.28	0	810382..812259	+	625	150393228	-	SaurJH1_0760	-	ABC transporter related
749	 31.82	0	812271..814052	+	593	150393229	-	SaurJH1_0761	-	ATP-dependent DNA helicase RecQ
750	 33.74	0	814274..815251	+	325	150393230	-	SaurJH1_0762	-	ABC transporter related
751	 31.55	0	815244..816758	+	504	150393231	-	SaurJH1_0763	-	substrate-binding region of ABC-type glycine betaine transport system
752	 33.43	0	816998..818056	+	352	150393232	-	SaurJH1_0764	-	histidinol-phosphate aminotransferase
753	 32.23	0	818395..818937	+	180	150393233	-	SaurJH1_0765	-	hypothetical protein
754	 31.70	0	819816..820733	-	305	150393234	-	SaurJH1_0766	-	diacylglycerol kinase catalytic region
755	 34.33	0	821003..822508	-	501	150393235	-	SaurJH1_0767	-	amino acid/peptide transporter
756	 23.58	-2	822574..822819	-	81	150393236	-	SaurJH1_0768	-	hypothetical protein
33.01	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.