IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
590	 34.78	0	653285..656746	+	1153	150393070	-	SaurJH1_0600	-	cell wall anchor domain-containing protein
591	 30.28	0	656867..658339	+	490	150393071	-	SaurJH1_0601	-	Poly(glycerol-phosphate) alpha-glucosyltransferase
592	 30.32	0	658464..659954	-	496	150393072	-	SaurJH1_0602	-	Poly(glycerol-phosphate) alpha-glucosyltransferase
593	 34.81	0	660236..661114	-	292	150393073	-	SaurJH1_0603	-	putative GTP cyclohydrolase
594	 36.04	0	661127..661792	-	221	150393074	-	SaurJH1_0604	-	hypothetical protein
595	 35.26	0	661806..662168	-	120	150393075	-	SaurJH1_0605	-	hypothetical protein
596	 33.73	0	662444..663202	+	252	150393076	-	SaurJH1_0606	-	glucosamine/galactosamine-6-phosphate isomerase
597	 34.76	0	663279..663911	+	210	150393077	-	SaurJH1_0607	-	orotidine 5'-phosphate decarboxylase
598	 36.61	+1	663913..664461	+	182	150393078	-	SaurJH1_0608	-	sugar isomerase (SIS)
599	 34.41	0	664574..665221	+	215	150393079	-	SaurJH1_0609	-	HAD family hydrolase
600	 34.55	0	665723..667123	+	466	150393080	-	SaurJH1_0610	-	major facilitator transporter
601	 27.55	-1	667374..667667	+	97	150393081	-	SaurJH1_0611	-	hypothetical protein
602	 32.46	0	667667..669043	+	458	150393082	-	SaurJH1_0612	-	AMP-dependent synthetase and ligase
603	 38.25	+1	669045..670184	+	379	150393083	-	SaurJH1_0613	-	acetyl-CoA acetyltransferase
604	 31.97	0	670159..670524	+	121	150393084	-	SaurJH1_0614	-	hypothetical protein
605	 29.63	-1	670527..670796	+	89	150393085	-	SaurJH1_0615	-	hypothetical protein
606	 29.76	0	670997..671164	-	55	150393086	-	SaurJH1_0616	-	hypothetical protein
607	 37.91	+1	671671..672501	-	276	150393087	-	SaurJH1_0617	-	phosphomethylpyrimidine kinase
608	 35.46	0	672685..673341	+	218	150393088	-	SaurJH1_0618	-	uracil-DNA glycosylase
609	 35.70	0	673342..673722	+	126	150393089	-	SaurJH1_0619	-	hypothetical protein
610	 33.88	0	673855..674223	+	122	150393090	-	SaurJH1_0620	-	hypothetical protein
611	 35.62	0	674344..675828	+	494	150393091	-	SaurJH1_0621	-	amino acid permease-associated region
612	 34.22	0	675969..676421	-	150	150393092	-	SaurJH1_0622	-	hypothetical protein
613	 36.60	+1	676434..677198	-	254	150393093	-	SaurJH1_0623	-	hypothetical protein
614	 31.82	0	677509..677706	+	65	150393094	-	SaurJH1_0624	-	hypothetical protein
615	 33.33	0	677747..678499	-	250	150393095	-	SaurJH1_0625	-	putative heme peroxidase
616	 36.47	+1	678667..679653	+	328	150393096	eutD	SaurJH1_0626	-	phosphotransacetylase
617	 34.29	0	679656..680492	+	278	150393097	-	SaurJH1_0627	-	lipoate-protein ligase A protein
618	 38.11	+1	681079..681999	+	306	150393098	-	SaurJH1_0628	-	mevalonate kinase
619	 36.89	+1	682004..682987	+	327	150393099	-	SaurJH1_0629	-	mevalonate diphosphate decarboxylase
620	 33.43	0	683000..684076	+	358	150393100	-	SaurJH1_0630	-	phosphomevalonate kinase
621	 35.38	0	684253..684594	+	113	150393101	-	SaurJH1_0631	-	hypothetical protein
622	 34.62	0	684646..685968	-	440	150393102	-	SaurJH1_0632	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
623	 32.65	0	685955..686395	-	146	150393103	-	SaurJH1_0633	-	hypothetical protein
624	 34.12	0	687020..688414	+	464	150393104	-	SaurJH1_0634	-	hypothetical protein
625	 24.64	-2	688418..689050	+	210	150393105	-	SaurJH1_0635	-	hypothetical protein
626	 24.96	-2	689097..689717	+	206	150393106	-	SaurJH1_0636	-	hypothetical protein
627	 25.28	-2	689857..690489	+	210	150393107	-	SaurJH1_0637	-	hypothetical protein
628	 34.93	0	690937..691875	+	312	150393108	-	SaurJH1_0638	-	aldo/keto reductase
629	 35.38	0	692321..692857	+	178	150393109	-	SaurJH1_0639	-	hypothetical protein
630	 31.66	0	693025..693501	+	158	150393110	-	SaurJH1_0640	-	GCN5-related N-acetyltransferase
631	 33.10	0	693541..694836	+	431	150393111	-	SaurJH1_0641	-	metal-dependent phosphohydrolase
632	 32.94	0	694879..695385	+	168	150393112	-	SaurJH1_0642	-	hypothetical protein
633	 36.20	0	695884..696894	+	336	150393113	-	SaurJH1_0643	-	alcohol dehydrogenase
634	 32.13	0	697170..697586	+	138	150393114	-	SaurJH1_0644	-	hypothetical protein
635	 33.15	0	697583..699244	+	553	150393115	argS	SaurJH1_0645	-	arginyl-tRNA synthetase
636	 28.30	-1	699514..700149	+	211	150393116	-	SaurJH1_0646	-	HhH-GPD family protein
637	 32.09	0	700401..701288	+	295	150393117	-	SaurJH1_0647	-	periplasmic binding protein
638	 31.51	0	701401..702387	+	328	150393118	-	SaurJH1_0648	-	transport system permease protein
639	 30.56	0	702442..703161	+	239	150393119	-	SaurJH1_0649	-	HAD family hydrolase
640	 31.96	0	703145..703945	+	266	150393120	-	SaurJH1_0650	-	alpha/beta hydrolase fold
641	 30.97	0	704081..704587	+	168	150393121	-	SaurJH1_0651	-	hypothetical protein
642	 26.22	-2	704749..705465	+	238	150393122	-	SaurJH1_0652	-	hypothetical protein
643	 29.91	0	705634..706422	+	262	150393123	-	SaurJH1_0653	-	alpha/beta hydrolase fold
644	 27.47	-1	706675..707049	-	124	150393124	-	SaurJH1_0655	-	accessory regulator A-like protein
645	 30.86	0	707997..708926	-	309	150393125	-	SaurJH1_0656	-	hypothetical protein
646	 29.78	0	709121..709345	-	74	150393126	-	SaurJH1_0657	-	hypothetical protein
647	 31.86	0	709362..709565	-	67	150393127	-	SaurJH1_0658	-	hypothetical protein
648	 30.12	0	709724..710284	+	186	150393128	-	SaurJH1_0659	-	phage integrase family protein
649	 31.96	0	710303..712705	+	800	150393129	-	SaurJH1_0660	-	putative monovalent cation/H+ antiporter subunit A
650	 32.63	0	712692..713117	+	141	150393130	-	SaurJH1_0661	-	putative monovalent cation/H+ antiporter subunit B
651	 30.43	0	713114..713458	+	114	150393131	-	SaurJH1_0662	-	putative monovalent cation/H+ antiporter subunit C
652	 33.47	0	713448..714944	+	498	150393132	-	SaurJH1_0663	-	putative monovalent cation/H+ antiporter subunit D
653	 26.29	-1	714945..715427	+	160	150393133	-	SaurJH1_0664	-	putative monovalent cation/H+ antiporter subunit E
654	 33.00	0	715424..715726	+	100	150393134	-	SaurJH1_0665	-	putative monovalent cation/H+ antiporter subunit F
655	 33.79	0	715701..716138	+	145	150393135	-	SaurJH1_0666	-	putative monovalent cation/H+ antiporter subunit G
656	 31.86	0	716478..718520	+	680	150393136	-	SaurJH1_0667	-	sodium/hydrogen exchanger
657	 30.91	0	718701..720020	-	439	150393137	-	SaurJH1_0668	-	transposase IS204/IS1001/IS1096/IS1165 family protein
658	 31.61	0	721140..722069	-	309	150393138	-	SaurJH1_0669	-	periplasmic solute binding protein
659	 32.14	0	722066..722902	-	278	150393139	-	SaurJH1_0670	-	ABC-3 protein
660	 33.47	0	722896..723639	-	247	150393140	-	SaurJH1_0671	-	ABC transporter related
661	 30.39	0	723761..724405	+	214	150393141	-	SaurJH1_0672	-	iron dependent repressor
662	 30.81	0	724485..725237	-	250	150393142	-	SaurJH1_0673	-	hypothetical protein
663	 33.73	0	725473..726237	+	254	150393143	-	SaurJH1_0674	-	WecB/TagA/CpsF family glycosyl transferase
664	 34.09	0	726298..727092	-	264	150393144	-	SaurJH1_0675	-	teichoic acids export protein ATP-binding subunit
665	 31.12	0	727439..728251	+	270	150393145	-	SaurJH1_0676	-	ABC-2 type transporter
666	 32.25	0	728350..729453	+	367	150393146	-	SaurJH1_0677	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
667	 32.02	0	729450..730511	+	353	150393147	-	SaurJH1_0678	-	glycosyl transferase family protein
668	 32.33	0	730574..730972	+	132	150393148	-	SaurJH1_0679	-	glycerol-3-phosphate cytidylyltransferase
669	 34.41	0	731089..732384	-	431	150393149	-	SaurJH1_0680	-	Serine-type D-Ala-D-Ala carboxypeptidase
670	 33.10	0	732805..734532	+	575	150393150	-	SaurJH1_0681	-	ABC transporter related
671	 34.23	0	734889..736118	+	409	150393151	-	SaurJH1_0682	-	Na+ dependent nucleoside transporter
672	 23.66	-2	736373..736465	+	30	150393152	-	SaurJH1_0683	-	hypothetical protein
673	 34.05	0	736643..737476	+	277	150393153	-	SaurJH1_0684	-	hypothetical protein
674	 35.09	0	737758..738555	+	265	150393154	-	SaurJH1_0685	-	ABC transporter related
675	 35.92	0	738591..739595	+	334	150393155	-	SaurJH1_0686	-	cell wall anchor domain-containing protein
676	 35.59	0	739592..740608	+	338	150393156	-	SaurJH1_0687	-	transport system permease protein
677	 35.71	0	740842..741810	+	322	150393157	-	SaurJH1_0688	-	dihydroxyacetone kinase, DhaK subunit
678	 35.73	0	741852..742436	+	194	150393158	-	SaurJH1_0689	-	dihydroxyacetone kinase, L subunit
679	 34.71	0	742429..742791	+	120	150393159	-	SaurJH1_0690	-	hypothetical protein
680	 32.53	0	742907..743404	+	165	150393160	-	SaurJH1_0691	-	hypothetical protein
681	 32.96	0	743861..744928	+	355	150393161	-	SaurJH1_0692	-	hypothetical protein
682	 31.13	0	745079..746122	+	347	150393162	-	SaurJH1_0693	-	alpha/beta hydrolase domain-containing protein
683	 27.74	-1	746451..746879	+	142	150393163	-	SaurJH1_0694	-	hypothetical protein
684	 34.71	0	747088..747594	-	168	150393164	-	SaurJH1_0695	-	hypothetical protein
685	 31.82	0	747707..748630	+	307	150393165	-	SaurJH1_0696	-	hypothetical protein
686	 30.67	0	748646..749320	+	224	150393166	-	SaurJH1_0697	-	response regulator receiver
687	 30.74	0	749313..750353	+	346	150393167	-	SaurJH1_0698	-	ATPase domain-containing protein
688	 31.36	0	750497..751258	+	253	150393168	-	SaurJH1_0699	-	ABC transporter related
689	 28.41	-1	751248..753137	+	629	150393169	-	SaurJH1_0700	-	ABC transporter permease
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.