IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
507	 37.58	+1	549407..549736	+	109	150392987	-	SaurJH1_0517	-	hypothetical protein
508	 30.74	0	549950..550876	+	308	150392988	-	SaurJH1_0518	-	DNA-directed DNA polymerase
509	 32.71	0	550877..551680	+	267	150392989	-	SaurJH1_0519	-	PSP1 domain-containing protein
510	 31.90	0	551697..552044	+	115	150392990	-	SaurJH1_0520	-	DNA replication intiation control protein YabA
511	 33.75	0	552318..553043	+	241	150392991	-	SaurJH1_0521	-	hypothetical protein
512	 33.73	0	553036..553284	+	82	150392992	-	SaurJH1_0522	-	excinuclease ABC subunit C
513	 35.12	0	553286..554125	+	279	150392993	-	SaurJH1_0523	-	uroporphyrin-III C/tetrapyrrole methyltransferase
514	 34.09	0	554410..556383	+	657	150392994	-	SaurJH1_0524	-	methionyl-tRNA synthetase
515	 36.82	+1	556414..557187	+	257	150392995	-	SaurJH1_0525	-	TatD family hydrolase
516	 35.20	0	557354..557890	+	178	150392996	-	SaurJH1_0526	-	hypothetical protein
517	 32.77	0	557901..558794	+	297	150392997	ksgA	SaurJH1_0527	-	dimethyladenosine transferase
518	 32.20	0	558894..559157	+	87	150392998	-	SaurJH1_0528	-	hypothetical protein
519	 34.75	0	559467..560315	+	282	150392999	-	SaurJH1_0529	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
520	 32.24	0	560329..561153	+	274	150393000	-	SaurJH1_0530	-	purine operon repressor
521	 34.38	0	561170..561550	+	126	150393001	-	SaurJH1_0531	-	putative endoribonuclease L-PSP
522	 36.63	+1	561622..561924	+	100	150393002	-	SaurJH1_0532	-	regulatory protein SpoVG
523	 25.00	-2	562135..562266	+	43	150393003	-	SaurJH1_0533	-	hypothetical protein
524	 39.25	+1	562289..563641	+	450	150393004	-	SaurJH1_0534	-	UDP-N-acetylglucosamine pyrophosphorylase
525	 35.30	0	563788..564753	+	321	150393005	-	SaurJH1_0535	-	ribose-phosphate pyrophosphokinase
526	 37.46	+1	564903..565556	+	217	150393006	-	SaurJH1_0536	-	50S ribosomal protein L25/general stress protein Ctc
527	 32.81	0	565867..566439	+	190	150393007	-	SaurJH1_0537	-	peptidyl-tRNA hydrolase
528	 34.16	0	566439..569945	+	1168	150393008	-	SaurJH1_0538	-	transcription-repair coupling factor
529	 32.94	0	569935..571461	+	508	150393009	-	SaurJH1_0539	-	polysaccharide biosynthesis protein
530	 35.01	0	571461..572654	+	397	150393010	-	SaurJH1_0540	-	MazG nucleotide pyrophosphohydrolase
531	 34.85	0	572651..572914	+	87	150393011	-	SaurJH1_0541	-	RNA-binding S4 domain-containing protein
532	 33.33	0	572932..573324	+	130	150393012	-	SaurJH1_0542	-	septum formation initiator
533	 34.58	0	573429..573830	+	133	150393013	-	SaurJH1_0543	-	hypothetical protein
534	 30.71	0	574010..575305	+	431	150393014	-	SaurJH1_0544	-	hypothetical protein
535	 30.37	0	575310..575849	+	179	150393015	-	SaurJH1_0545	-	hypoxanthine phosphoribosyltransferase
536	 35.63	0	576106..578199	+	697	150393016	-	SaurJH1_0546	-	ATP-dependent metalloprotease FtsH
537	 36.51	+1	578427..579308	+	293	150393017	-	SaurJH1_0547	-	Hsp33 protein
538	 38.16	+1	579487..580419	+	310	150393018	-	SaurJH1_0548	-	cysteine synthase A
539	 36.32	0	580635..581438	+	267	150393019	-	SaurJH1_0549	-	dihydropteroate synthase
540	 35.79	0	581416..581781	+	121	150393020	-	SaurJH1_0550	-	dihydroneopterin aldolase
541	 33.75	0	581778..582254	+	158	150393021	-	SaurJH1_0551	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
542	 24.73	-2	582648..582740	+	30	150393022	-	SaurJH1_0552	-	hypothetical protein
543	 34.88	0	582733..584280	+	515	150393023	lysS	SaurJH1_0553	-	lysyl-tRNA synthetase
544	 29.28	-1	596512..597894	-	460	150393024	-	SaurJH1_0554	-	regulatory protein GntR HTH
545	 38.85	+1	597998..598885	+	295	150393025	-	SaurJH1_0555	-	pyridoxine biosynthesis protein
546	 33.69	0	598889..599449	+	186	150393026	-	SaurJH1_0556	-	glutamine amidotransferase subunit PdxT
547	 33.09	0	599657..600871	-	404	150393027	-	SaurJH1_0557	-	Na+ dependent nucleoside transporter
548	 30.95	0	601029..601490	+	153	150393028	-	SaurJH1_0558	-	Firmicute transcriptional repressor of class III stress genes
549	 34.22	0	601509..602075	+	188	150393029	-	SaurJH1_0559	-	hypothetical protein
550	 32.34	0	602062..603072	+	336	150393030	-	SaurJH1_0560	-	ATP:guanido phosphotransferase
551	 34.11	0	603086..605542	+	818	150393031	-	SaurJH1_0561	-	ATPase
552	 36.85	+1	606027..607391	+	454	150393032	-	SaurJH1_0562	-	DNA repair protein RadA
553	 30.45	0	607416..608489	+	357	150393033	-	SaurJH1_0563	-	PilT domain-containing protein
554	 34.23	0	609046..610500	+	484	150393034	-	SaurJH1_0564	-	glutamyl-tRNA synthetase
555	 35.49	0	610923..611570	+	215	150393035	-	SaurJH1_0565	-	serine O-acetyltransferase
556	 33.05	0	611554..612954	+	466	150393036	cysS	SaurJH1_0566	-	cysteinyl-tRNA synthetase
557	 32.10	0	612947..613351	+	134	150393037	-	SaurJH1_0567	-	hypothetical protein
558	 35.34	0	613359..614105	+	248	150393038	-	SaurJH1_0568	-	RNA methyltransferase
559	 32.76	0	614105..614629	+	174	150393039	-	SaurJH1_0569	-	hypothetical protein
560	 27.37	-1	614710..615279	+	189	150393040	-	SaurJH1_0570	-	hypothetical protein
561	 32.64	0	615394..615537	+	47	150393041	rpmG	SaurJH1_0571	-	50S ribosomal protein L33
562	 28.96	-1	615593..615775	+	60	150393042	secE	SaurJH1_0572	-	preprotein translocase subunit SecE
563	 35.52	0	615788..616336	+	182	150393043	-	SaurJH1_0573	-	transcription antitermination protein
564	 38.77	+1	616517..616939	+	140	150393044	rplK	SaurJH1_0574	-	50S ribosomal protein L11
565	 36.36	0	617147..617839	+	230	150393045	rplA	SaurJH1_0575	-	50S ribosomal protein L1
566	 37.13	+1	618110..618610	+	166	150393046	rplJ	SaurJH1_0576	-	50S ribosomal protein L10
567	 35.77	0	618653..619021	+	122	150393047	rplL	SaurJH1_0577	-	50S ribosomal protein L7/L12
568	 33.83	0	619196..619804	+	202	150393048	-	SaurJH1_0578	-	hypothetical protein
569	 37.56	+1	620019..623570	+	1183	150393049	rpoB	SaurJH1_0579	-	DNA-directed RNA polymerase subunit beta
570	 36.18	0	623707..627330	+	1207	150393050	-	SaurJH1_0580	-	DNA-directed RNA polymerase subunit beta'
571	 32.16	0	627467..627721	+	84	150393051	-	SaurJH1_0581	-	putative ribosomal protein L7Ae-like
572	 37.44	+1	627819..628232	+	137	150393052	rpsL	SaurJH1_0582	-	30S ribosomal protein S12
573	 38.43	+1	628298..628768	+	156	150393053	-	SaurJH1_0583	-	30S ribosomal protein S7
574	 39.15	+1	628891..630972	+	693	150393054	-	SaurJH1_0584	-	elongation factor G
575	 40.68	+2	631189..632373	+	394	150393055	-	SaurJH1_0585	-	elongation factor Tu
576	 34.95	0	632655..633830	-	391	150393056	-	SaurJH1_0586	-	amidohydrolase
577	 34.09	0	634001..635188	+	395	150393057	-	SaurJH1_0587	-	2-amino-3-ketobutyrate coenzyme A ligase
578	 34.36	0	635458..636336	+	292	150393058	-	SaurJH1_0588	-	chaperone protein HchA
579	 32.91	0	636492..638132	+	546	150393059	-	SaurJH1_0589	-	ribulokinase
580	 35.30	0	638346..639311	+	321	150393060	-	SaurJH1_0590	-	NAD-dependent epimerase/dehydratase
581	 34.91	0	639647..640723	+	358	150393061	-	SaurJH1_0591	-	branched-chain amino acid aminotransferase
582	 34.65	0	640973..641656	+	227	150393062	-	SaurJH1_0592	-	HAD family hydrolase
583	 32.13	0	641772..642434	-	220	150393063	-	SaurJH1_0593	-	deoxynucleoside kinase
584	 26.85	-1	642427..643089	-	220	150393064	-	SaurJH1_0594	-	deoxynucleoside kinase
585	 36.31	0	643111..643581	+	156	150393065	-	SaurJH1_0595	-	CMP/dCMP deaminase zinc-binding
586	 33.68	0	643728..644597	+	289	150393066	-	SaurJH1_0596	-	Cof-like hydrolase
587	 30.69	0	644618..645184	+	188	150393067	-	SaurJH1_0597	-	hypothetical protein
588	 35.33	0	645614..648511	+	965	150393068	-	SaurJH1_0598	-	cell wall anchor domain-containing protein
589	 33.61	0	648878..652891	+	1337	150393069	-	SaurJH1_0599	-	cell wall anchor domain-containing protein
590	 34.78	0	653285..656746	+	1153	150393070	-	SaurJH1_0600	-	cell wall anchor domain-containing protein
591	 30.28	0	656867..658339	+	490	150393071	-	SaurJH1_0601	-	Poly(glycerol-phosphate) alpha-glucosyltransferase
592	 30.32	0	658464..659954	-	496	150393072	-	SaurJH1_0602	-	Poly(glycerol-phosphate) alpha-glucosyltransferase
593	 34.81	0	660236..661114	-	292	150393073	-	SaurJH1_0603	-	putative GTP cyclohydrolase
594	 36.04	0	661127..661792	-	221	150393074	-	SaurJH1_0604	-	hypothetical protein
595	 35.26	0	661806..662168	-	120	150393075	-	SaurJH1_0605	-	hypothetical protein
596	 33.73	0	662444..663202	+	252	150393076	-	SaurJH1_0606	-	glucosamine/galactosamine-6-phosphate isomerase
597	 34.76	0	663279..663911	+	210	150393077	-	SaurJH1_0607	-	orotidine 5'-phosphate decarboxylase
598	 36.61	+1	663913..664461	+	182	150393078	-	SaurJH1_0608	-	sugar isomerase (SIS)
599	 34.41	0	664574..665221	+	215	150393079	-	SaurJH1_0609	-	HAD family hydrolase
600	 34.55	0	665723..667123	+	466	150393080	-	SaurJH1_0610	-	major facilitator transporter
601	 27.55	-1	667374..667667	+	97	150393081	-	SaurJH1_0611	-	hypothetical protein
602	 32.46	0	667667..669043	+	458	150393082	-	SaurJH1_0612	-	AMP-dependent synthetase and ligase
603	 38.25	+1	669045..670184	+	379	150393083	-	SaurJH1_0613	-	acetyl-CoA acetyltransferase
604	 31.97	0	670159..670524	+	121	150393084	-	SaurJH1_0614	-	hypothetical protein
605	 29.63	-1	670527..670796	+	89	150393085	-	SaurJH1_0615	-	hypothetical protein
606	 29.76	0	670997..671164	-	55	150393086	-	SaurJH1_0616	-	hypothetical protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.