IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.01   STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
461	 34.63	0	491775..492083	-	102	150392941	-	SaurJH1_0470	-	hypothetical protein
462	 29.07	-1	492450..493223	+	257	150392942	-	SaurJH1_0471	-	putative lipoprotein
463	 27.92	-1	493254..494048	+	264	150392943	-	SaurJH1_0472	-	putative lipoprotein
464	 30.15	0	494096..494881	+	261	150392944	-	SaurJH1_0473	-	putative lipoprotein
465	 30.28	0	495748..496533	+	261	150392945	-	SaurJH1_0475	-	putative lipoprotein
466	 30.01	0	496552..497334	+	260	150392946	-	SaurJH1_0476	-	putative lipoprotein
467	 30.43	0	497394..498185	+	263	150392947	-	SaurJH1_0477	-	putative lipoprotein
468	 29.34	-1	498237..499037	+	266	150392948	-	SaurJH1_0478	-	putative lipoprotein
469	 30.14	0	499056..499838	+	260	150392949	-	SaurJH1_0479	-	putative lipoprotein
470	 30.75	0	500020..500832	+	270	150392950	-	SaurJH1_0480	-	putative lipoprotein
471	 30.47	0	500822..502147	+	441	150392951	-	SaurJH1_0481	-	hypothetical protein
472	 27.47	-1	502144..502467	+	107	150392952	-	SaurJH1_0482	-	hypothetical protein
473	 31.75	0	502486..502800	+	104	150392953	-	SaurJH1_0483	-	hypothetical protein
474	 30.26	0	503089..503283	-	64	150392954	-	SaurJH1_0484	-	hypothetical protein
475	 36.24	0	503468..504670	+	400	150392955	-	SaurJH1_0485	-	cobalamin synthesis protein P47K
476	 40.31	+2	504939..505067	+	42	150392956	-	SaurJH1_0486	-	hypothetical protein
477	 37.51	+1	506258..507742	+	494	150392957	-	SaurJH1_0487	-	NADH dehydrogenase subunit 5
478	 38.80	+1	507755..510460	+	901	150392958	-	SaurJH1_0488	-	hypothetical protein
479	 34.16	0	510622..510984	+	120	150392959	-	SaurJH1_0489	-	hypothetical protein
480	 26.86	-1	511213..511629	-	138	150392960	-	SaurJH1_0490	-	hypothetical protein
481	 34.22	0	511667..512341	+	224	150392961	-	SaurJH1_0491	-	hypothetical protein
482	 33.74	0	512378..513112	+	244	150392962	-	SaurJH1_0492	-	hypothetical protein
483	 34.53	0	513481..514821	+	446	150392963	-	SaurJH1_0493	-	sodium:neurotransmitter symporter
484	 39.08	+1	514987..515943	+	318	150392964	-	SaurJH1_0494	-	pyridoxal-5'-phosphate-dependent protein beta subunit
485	 36.13	0	515936..517078	+	380	150392965	-	SaurJH1_0495	-	cystathionine gamma-synthase
486	 35.18	0	517370..518398	+	342	150392966	-	SaurJH1_0496	-	ABC transporter related
487	 36.67	+1	518402..519061	+	219	150392967	-	SaurJH1_0497	-	binding-protein-dependent transport systems inner membrane component
488	 32.86	0	519098..519940	+	280	150392968	-	SaurJH1_0498	-	NLPA lipoprotein
489	 36.62	+1	520272..521276	+	334	150392969	-	SaurJH1_0499	-	CHAP domain-containing protein
490	 32.96	0	521461..521730	-	89	150392970	-	SaurJH1_0500	-	hypothetical protein
491	 34.09	0	521879..522274	+	131	150392971	-	SaurJH1_0501	-	NUDIX hydrolase
492	 36.01	0	522264..522749	+	161	150392972	-	SaurJH1_0502	-	GCN5-related N-acetyltransferase
493	 32.44	0	522918..523700	-	260	150392973	-	SaurJH1_0503	-	hypothetical protein
494	 33.42	0	523697..524809	-	370	150392974	-	SaurJH1_0504	-	hypothetical protein
495	 33.11	0	524930..525814	-	294	150392975	-	SaurJH1_0505	-	regulatory protein LysR
496	 37.67	+1	525995..530494	+	1499	150392976	-	SaurJH1_0506	-	glutamate synthase (ferredoxin)
497	 38.39	+1	530512..531975	+	487	150392977	gltD	SaurJH1_0507	-	glutamate synthase subunit beta
498	 37.18	+1	532805..534232	+	475	150392978	-	SaurJH1_0508	-	PTS system, trehalose-specific IIBC subunit
499	 36.26	0	534296..535936	+	546	150392979	-	SaurJH1_0509	-	alpha,alpha-phosphotrehalase
500	 33.74	0	535961..536689	+	242	150392980	-	SaurJH1_0510	-	trehalose operon repressor
501	 33.14	0	537332..537856	+	174	150392981	-	SaurJH1_0511	-	GCN5-related N-acetyltransferase
502	 36.28	0	537925..539622	+	565	150392982	-	SaurJH1_0512	-	DNA polymerase III, subunits gamma and tau
503	 39.62	+1	539712..540029	+	105	150392983	-	SaurJH1_0513	-	hypothetical protein
504	 36.35	0	540036..540632	+	198	150392984	recR	SaurJH1_0514	-	recombination protein RecR
505	 33.03	0	547423..548760	+	445	150392985	-	SaurJH1_0515	-	Orn/Lys/Arg decarboxylase major region
506	 33.01	0	548762..549379	+	205	150392986	-	SaurJH1_0516	-	dTMP kinase
507	 37.58	+1	549407..549736	+	109	150392987	-	SaurJH1_0517	-	hypothetical protein
508	 30.74	0	549950..550876	+	308	150392988	-	SaurJH1_0518	-	DNA-directed DNA polymerase
509	 32.71	0	550877..551680	+	267	150392989	-	SaurJH1_0519	-	PSP1 domain-containing protein
510	 31.90	0	551697..552044	+	115	150392990	-	SaurJH1_0520	-	DNA replication intiation control protein YabA
511	 33.75	0	552318..553043	+	241	150392991	-	SaurJH1_0521	-	hypothetical protein
512	 33.73	0	553036..553284	+	82	150392992	-	SaurJH1_0522	-	excinuclease ABC subunit C
513	 35.12	0	553286..554125	+	279	150392993	-	SaurJH1_0523	-	uroporphyrin-III C/tetrapyrrole methyltransferase
514	 34.09	0	554410..556383	+	657	150392994	-	SaurJH1_0524	-	methionyl-tRNA synthetase
515	 36.82	+1	556414..557187	+	257	150392995	-	SaurJH1_0525	-	TatD family hydrolase
516	 35.20	0	557354..557890	+	178	150392996	-	SaurJH1_0526	-	hypothetical protein
517	 32.77	0	557901..558794	+	297	150392997	ksgA	SaurJH1_0527	-	dimethyladenosine transferase
518	 32.20	0	558894..559157	+	87	150392998	-	SaurJH1_0528	-	hypothetical protein
519	 34.75	0	559467..560315	+	282	150392999	-	SaurJH1_0529	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
520	 32.24	0	560329..561153	+	274	150393000	-	SaurJH1_0530	-	purine operon repressor
521	 34.38	0	561170..561550	+	126	150393001	-	SaurJH1_0531	-	putative endoribonuclease L-PSP
522	 36.63	+1	561622..561924	+	100	150393002	-	SaurJH1_0532	-	regulatory protein SpoVG
523	 25.00	-2	562135..562266	+	43	150393003	-	SaurJH1_0533	-	hypothetical protein
524	 39.25	+1	562289..563641	+	450	150393004	-	SaurJH1_0534	-	UDP-N-acetylglucosamine pyrophosphorylase
525	 35.30	0	563788..564753	+	321	150393005	-	SaurJH1_0535	-	ribose-phosphate pyrophosphokinase
526	 37.46	+1	564903..565556	+	217	150393006	-	SaurJH1_0536	-	50S ribosomal protein L25/general stress protein Ctc
527	 32.81	0	565867..566439	+	190	150393007	-	SaurJH1_0537	-	peptidyl-tRNA hydrolase
528	 34.16	0	566439..569945	+	1168	150393008	-	SaurJH1_0538	-	transcription-repair coupling factor
529	 32.94	0	569935..571461	+	508	150393009	-	SaurJH1_0539	-	polysaccharide biosynthesis protein
530	 35.01	0	571461..572654	+	397	150393010	-	SaurJH1_0540	-	MazG nucleotide pyrophosphohydrolase
531	 34.85	0	572651..572914	+	87	150393011	-	SaurJH1_0541	-	RNA-binding S4 domain-containing protein
532	 33.33	0	572932..573324	+	130	150393012	-	SaurJH1_0542	-	septum formation initiator
533	 34.58	0	573429..573830	+	133	150393013	-	SaurJH1_0543	-	hypothetical protein
534	 30.71	0	574010..575305	+	431	150393014	-	SaurJH1_0544	-	hypothetical protein
535	 30.37	0	575310..575849	+	179	150393015	-	SaurJH1_0545	-	hypoxanthine phosphoribosyltransferase
536	 35.63	0	576106..578199	+	697	150393016	-	SaurJH1_0546	-	ATP-dependent metalloprotease FtsH
537	 36.51	+1	578427..579308	+	293	150393017	-	SaurJH1_0547	-	Hsp33 protein
538	 38.16	+1	579487..580419	+	310	150393018	-	SaurJH1_0548	-	cysteine synthase A
539	 36.32	0	580635..581438	+	267	150393019	-	SaurJH1_0549	-	dihydropteroate synthase
540	 35.79	0	581416..581781	+	121	150393020	-	SaurJH1_0550	-	dihydroneopterin aldolase
541	 33.75	0	581778..582254	+	158	150393021	-	SaurJH1_0551	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
542	 24.73	-2	582648..582740	+	30	150393022	-	SaurJH1_0552	-	hypothetical protein
543	 34.88	0	582733..584280	+	515	150393023	lysS	SaurJH1_0553	-	lysyl-tRNA synthetase
544	 29.28	-1	596512..597894	-	460	150393024	-	SaurJH1_0554	-	regulatory protein GntR HTH
545	 38.85	+1	597998..598885	+	295	150393025	-	SaurJH1_0555	-	pyridoxine biosynthesis protein
546	 33.69	0	598889..599449	+	186	150393026	-	SaurJH1_0556	-	glutamine amidotransferase subunit PdxT
547	 33.09	0	599657..600871	-	404	150393027	-	SaurJH1_0557	-	Na+ dependent nucleoside transporter
548	 30.95	0	601029..601490	+	153	150393028	-	SaurJH1_0558	-	Firmicute transcriptional repressor of class III stress genes
549	 34.22	0	601509..602075	+	188	150393029	-	SaurJH1_0559	-	hypothetical protein
550	 32.34	0	602062..603072	+	336	150393030	-	SaurJH1_0560	-	ATP:guanido phosphotransferase
551	 34.11	0	603086..605542	+	818	150393031	-	SaurJH1_0561	-	ATPase
552	 36.85	+1	606027..607391	+	454	150393032	-	SaurJH1_0562	-	DNA repair protein RadA
553	 30.45	0	607416..608489	+	357	150393033	-	SaurJH1_0563	-	PilT domain-containing protein
554	 34.23	0	609046..610500	+	484	150393034	-	SaurJH1_0564	-	glutamyl-tRNA synthetase
555	 35.49	0	610923..611570	+	215	150393035	-	SaurJH1_0565	-	serine O-acetyltransferase
556	 33.05	0	611554..612954	+	466	150393036	cysS	SaurJH1_0566	-	cysteinyl-tRNA synthetase
557	 32.10	0	612947..613351	+	134	150393037	-	SaurJH1_0567	-	hypothetical protein
558	 35.34	0	613359..614105	+	248	150393038	-	SaurJH1_0568	-	RNA methyltransferase
559	 32.76	0	614105..614629	+	174	150393039	-	SaurJH1_0569	-	hypothetical protein
560	 27.37	-1	614710..615279	+	189	150393040	-	SaurJH1_0570	-	hypothetical protein
33.01	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.