IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
387	 32.82	0	417350..418705	+	451	150392867	-	SaurJH1_0393	-	MATE efflux family protein
388	 29.25	-1	418809..419249	+	146	150392868	-	SaurJH1_0394	-	hypothetical protein
389	 37.09	+1	419332..420690	-	452	150392869	-	SaurJH1_0395	-	glycerol-3-phosphate transporter
390	 34.30	0	421002..421928	+	308	150392870	-	SaurJH1_0396	-	glyoxalase/bleomycin resistance protein/dioxygenase
391	 36.63	+1	421942..423003	+	353	150392871	-	SaurJH1_0397	-	luciferase family protein
392	 33.33	0	423017..423583	+	188	150392872	-	SaurJH1_0398	-	NADPH-dependent FMN reductase
393	 34.94	0	423642..424637	-	331	150392873	-	SaurJH1_0399	-	hypothetical protein
394	 35.16	0	425002..425547	+	181	150392874	-	SaurJH1_0400	-	GCN5-related N-acetyltransferase
395	 30.99	0	425814..426668	+	284	150392875	-	SaurJH1_0401	-	hypothetical protein
396	 37.24	+1	426665..427894	+	409	150392876	-	SaurJH1_0402	-	Dyp-type peroxidase family protein
397	 34.27	0	427875..429587	+	570	150392877	-	SaurJH1_0403	-	hypothetical protein
398	 33.50	0	429828..430433	-	201	150392878	-	SaurJH1_0404	-	Sec-independent periplasmic protein translocase
399	 36.57	+1	430546..430761	-	71	150392879	-	SaurJH1_0405	-	twin arginine-targeting protein translocase
400	 33.33	0	430870..431259	-	129	150392880	-	SaurJH1_0406	-	hypothetical protein
401	 39.71	+1	431499..431702	+	67	150392881	-	SaurJH1_0407	-	helix-turn-helix domain-containing protein
402	 31.65	0	431699..432412	+	237	150392882	-	SaurJH1_0408	-	hypothetical protein
403	 31.79	0	432437..433279	+	280	150392883	-	SaurJH1_0409	-	ABC transporter related
404	 32.54	0	433279..433908	+	209	150392884	-	SaurJH1_0410	-	hypothetical protein
405	 31.75	0	434295..435428	-	377	150392885	-	SaurJH1_0411	-	hypothetical protein
406	 38.41	+1	435967..437148	+	393	150392886	-	SaurJH1_0412	-	acetyl-CoA acetyltransferase
407	 37.45	+1	437231..437983	-	250	150392887	-	SaurJH1_0413	-	hypothetical protein
408	 34.41	0	438026..440254	-	742	150392888	-	SaurJH1_0414	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
409	 36.10	0	440251..442092	-	613	150392889	-	SaurJH1_0415	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
410	 37.90	+1	442061..443221	-	386	150392890	-	SaurJH1_0416	-	cystathionine gamma-synthase
411	 35.42	0	443218..444321	-	367	150392891	-	SaurJH1_0417	-	cystathionine gamma-synthase
412	 32.15	0	444527..444865	+	112	150392892	-	SaurJH1_0418	-	hypothetical protein
413	 33.81	0	444992..445828	+	278	150392893	-	SaurJH1_0419	-	parB-like partition protein
414	 31.41	0	445982..446863	+	293	150392894	-	SaurJH1_0420	-	hypothetical protein
415	 30.88	0	446893..447096	+	67	150392895	-	SaurJH1_0421	-	hypothetical protein
416	 35.34	0	447108..448205	+	365	150392896	-	SaurJH1_0422	-	translation-associated GTPase
417	 32.29	0	448291..448482	-	63	150392897	-	SaurJH1_0423	-	hypothetical protein
418	 38.05	+1	448726..449022	+	98	150392898	rpsF	SaurJH1_0424	-	30S ribosomal protein S6
419	 38.29	+1	449043..449546	+	167	150392899	-	SaurJH1_0425	-	single-strand binding protein
420	 37.04	+1	449598..449840	+	80	150392900	rpsR	SaurJH1_0426	-	30S ribosomal protein S18
421	 28.00	-1	450117..451091	-	324	150392901	-	SaurJH1_0427	-	Abi family protein
422	 29.90	0	452013..452624	+	203	150392902	-	SaurJH1_0429	-	hypothetical protein
423	 31.44	0	452993..453361	+	122	150392903	-	SaurJH1_0430	-	hypothetical protein
424	 30.89	0	453542..454114	+	190	150392904	-	SaurJH1_0431	-	hypothetical protein
425	 29.17	-1	454251..454514	-	87	150392905	-	SaurJH1_0432	-	hypothetical protein
426	 36.90	+1	454814..455065	+	83	150392906	-	SaurJH1_0433	-	hypothetical protein
427	 27.62	-1	455104..455313	-	69	150392907	-	SaurJH1_0434	-	hypothetical protein
428	 31.96	0	455491..456072	+	193	150392908	-	SaurJH1_0435	-	phosphoglycerate mutase
429	 31.01	0	456138..456524	-	128	150392909	-	SaurJH1_0436	-	hypothetical protein
430	 30.46	0	456791..457417	-	208	150392910	-	SaurJH1_0437	-	hypothetical protein
431	 32.93	0	457490..457735	-	81	150392911	-	SaurJH1_0438	-	hypothetical protein
432	 37.99	+1	457861..459384	-	507	150392912	-	SaurJH1_0439	-	alkyl hydroperoxide reductase subunit F
433	 37.19	+1	459400..459969	-	189	150392913	-	SaurJH1_0440	-	alkyl hydroperoxide reductase subunit C
434	 37.43	+1	460461..461216	+	251	150392914	-	SaurJH1_0441	-	nitroreductase
435	 39.31	+1	461296..462684	-	462	150392915	-	SaurJH1_0442	-	sodium:dicarboxylate symporter
436	 37.62	+1	463662..464618	-	318	150392916	-	SaurJH1_0443	-	hypothetical protein
437	 30.17	0	464736..465398	-	220	150392917	-	SaurJH1_0444	-	hypothetical protein
438	 32.84	0	465541..465948	-	135	150392918	-	SaurJH1_0445	-	hypothetical protein
439	 35.58	0	466461..467039	+	192	150392919	-	SaurJH1_0446	-	xanthine phosphoribosyltransferase
440	 35.54	0	467039..468307	+	422	150392920	-	SaurJH1_0447	-	uracil-xanthine permease
441	 37.29	+1	468345..469811	+	488	150392921	-	SaurJH1_0448	-	inosine-5'-monophosphate dehydrogenase
442	 37.29	+1	469836..471377	+	513	150392922	guaA	SaurJH1_0449	-	bifunctional GMP synthase/glutamine amidotransferase protein
443	 27.56	-1	471490..472026	-	178	150392923	-	SaurJH1_0450	-	hypothetical protein
444	 27.80	-1	472418..473122	-	234	150392924	-	SaurJH1_0451	-	hypothetical protein
445	 27.78	-1	474054..474215	-	53	150392925	-	SaurJH1_0454	-	hypothetical protein
446	 32.50	0	474738..475097	-	119	150392926	-	SaurJH1_0455	-	hypothetical protein
447	 34.87	0	475116..475961	-	281	150392927	-	SaurJH1_0456	-	hypothetical protein
448	 30.84	0	476433..477113	+	226	150392928	-	SaurJH1_0457	-	superantigen-like protein
449	 29.31	-1	477399..478094	+	231	150392929	-	SaurJH1_0458	-	superantigen-like protein
450	 34.55	0	478385..479455	+	356	150392930	-	SaurJH1_0459	-	superantigen-like protein
451	 33.45	0	479819..480697	+	292	150392931	-	SaurJH1_0460	-	superantigen-like protein
452	 31.77	0	481061..481765	+	234	150392932	-	SaurJH1_0461	-	superantigen-like protein 5
453	 30.32	0	482211..482906	+	231	150392933	-	SaurJH1_0462	-	superantigen-like protein 7
454	 28.47	-1	483245..483943	+	232	150392934	-	SaurJH1_0463	-	superantigen-like protein
455	 29.76	0	484320..485018	+	232	150392935	-	SaurJH1_0464	-	superantigen-like protein
456	 29.39	-1	485384..486067	+	227	150392936	-	SaurJH1_0465	-	superantigen-like protein
457	 38.21	+1	486331..487887	+	518	150392937	-	SaurJH1_0466	-	type I restriction-modification system, M subunit
458	 29.21	-1	487880..489091	+	403	150392938	-	SaurJH1_0467	-	restriction modification system DNA specificity subunit
459	 29.82	0	489474..490157	+	227	150392939	-	SaurJH1_0468	-	superantigen-like protein
460	 31.79	0	490179..491666	+	495	150392940	-	SaurJH1_0469	-	hypothetical protein
461	 34.63	0	491775..492083	-	102	150392941	-	SaurJH1_0470	-	hypothetical protein
462	 29.07	-1	492450..493223	+	257	150392942	-	SaurJH1_0471	-	putative lipoprotein
463	 27.92	-1	493254..494048	+	264	150392943	-	SaurJH1_0472	-	putative lipoprotein
464	 30.15	0	494096..494881	+	261	150392944	-	SaurJH1_0473	-	putative lipoprotein
465	 30.28	0	495748..496533	+	261	150392945	-	SaurJH1_0475	-	putative lipoprotein
466	 30.01	0	496552..497334	+	260	150392946	-	SaurJH1_0476	-	putative lipoprotein
467	 30.43	0	497394..498185	+	263	150392947	-	SaurJH1_0477	-	putative lipoprotein
468	 29.34	-1	498237..499037	+	266	150392948	-	SaurJH1_0478	-	putative lipoprotein
469	 30.14	0	499056..499838	+	260	150392949	-	SaurJH1_0479	-	putative lipoprotein
470	 30.75	0	500020..500832	+	270	150392950	-	SaurJH1_0480	-	putative lipoprotein
471	 30.47	0	500822..502147	+	441	150392951	-	SaurJH1_0481	-	hypothetical protein
472	 27.47	-1	502144..502467	+	107	150392952	-	SaurJH1_0482	-	hypothetical protein
473	 31.75	0	502486..502800	+	104	150392953	-	SaurJH1_0483	-	hypothetical protein
474	 30.26	0	503089..503283	-	64	150392954	-	SaurJH1_0484	-	hypothetical protein
475	 36.24	0	503468..504670	+	400	150392955	-	SaurJH1_0485	-	cobalamin synthesis protein P47K
476	 40.31	+2	504939..505067	+	42	150392956	-	SaurJH1_0486	-	hypothetical protein
477	 37.51	+1	506258..507742	+	494	150392957	-	SaurJH1_0487	-	NADH dehydrogenase subunit 5
478	 38.80	+1	507755..510460	+	901	150392958	-	SaurJH1_0488	-	hypothetical protein
479	 34.16	0	510622..510984	+	120	150392959	-	SaurJH1_0489	-	hypothetical protein
480	 26.86	-1	511213..511629	-	138	150392960	-	SaurJH1_0490	-	hypothetical protein
481	 34.22	0	511667..512341	+	224	150392961	-	SaurJH1_0491	-	hypothetical protein
482	 33.74	0	512378..513112	+	244	150392962	-	SaurJH1_0492	-	hypothetical protein
483	 34.53	0	513481..514821	+	446	150392963	-	SaurJH1_0493	-	sodium:neurotransmitter symporter
484	 39.08	+1	514987..515943	+	318	150392964	-	SaurJH1_0494	-	pyridoxal-5'-phosphate-dependent protein beta subunit
485	 36.13	0	515936..517078	+	380	150392965	-	SaurJH1_0495	-	cystathionine gamma-synthase
486	 35.18	0	517370..518398	+	342	150392966	-	SaurJH1_0496	-	ABC transporter related
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.