IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
343	 32.39	0	377894..378316	+	140	150392823	-	SaurJH1_0349	-	RinA family phage transcriptional regulator
344	 36.16	0	378644..379138	+	164	150392824	-	SaurJH1_0350	-	hypothetical protein
345	 34.24	0	379131..380339	+	402	150392825	-	SaurJH1_0351	-	PBSX family phage terminase large subunit
346	 35.90	0	380293..381771	+	492	150392826	-	SaurJH1_0352	-	SPP1 family phage portal protein
347	 38.32	+1	381728..382690	+	320	150392827	-	SaurJH1_0353	-	SPP1 family phage head morphogenesis protein
348	 36.52	+1	382788..383384	+	198	150392828	-	SaurJH1_0354	-	phage minor structural GP20
349	 39.03	+1	383405..384229	+	274	150392829	-	SaurJH1_0355	-	hypothetical protein
350	 36.70	+1	384246..384572	+	108	150392830	-	SaurJH1_0356	-	Rho termination factor domain-containing protein
351	 37.78	+1	384572..384886	+	104	150392831	-	SaurJH1_0357	-	hypothetical protein
352	 38.10	+1	384879..385214	+	111	150392832	-	SaurJH1_0358	-	phage head-tail adaptor, putative
353	 39.86	+2	385201..385614	+	137	150392833	-	SaurJH1_0359	-	HK97 family phage protein
354	 35.39	0	385627..386064	+	145	150392834	-	SaurJH1_0360	-	hypothetical protein
355	 39.04	+1	386051..386611	+	186	150392835	-	SaurJH1_0361	-	hypothetical protein
356	 36.97	+1	386673..387167	+	164	150392836	-	SaurJH1_0362	-	hypothetical protein
357	 39.47	+1	387188..387529	+	113	150392837	-	SaurJH1_0363	-	hypothetical protein
358	 38.92	+1	387532..390501	+	989	150392838	-	SaurJH1_0364	-	hypothetical protein
359	 33.76	0	390516..391451	+	311	150392839	-	SaurJH1_0365	-	hypothetical protein
360	 36.83	+1	391462..393348	+	628	150392840	-	SaurJH1_0366	-	phage minor structural protein
361	 35.86	0	393361..395259	+	632	150392841	-	SaurJH1_0367	-	phi ETA orf 56-like protein
362	 36.29	0	395259..397082	+	607	150392842	-	SaurJH1_0368	-	phiETA ORF57-like protein
363	 36.51	+1	397082..397459	+	125	150392843	-	SaurJH1_0369	-	SLT orf 129-like protein
364	 33.33	0	397460..397636	+	58	150392844	-	SaurJH1_0370	-	hypothetical protein
365	 32.00	0	397677..397976	+	99	150392845	-	SaurJH1_0371	-	hypothetical protein
366	 38.19	+1	398113..399987	+	624	150392846	-	SaurJH1_0372	-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
367	 33.93	0	400000..401172	+	390	150392847	-	SaurJH1_0373	-	phage tail fiber protein, putative
368	 32.59	0	401169..401573	+	134	150392848	-	SaurJH1_0374	-	phi ETA orf 63-like protein
369	 38.13	+1	401629..402066	+	145	150392849	-	SaurJH1_0375	-	phage phi LC3 family holin
370	 40.53	+2	402047..403492	+	481	150392850	-	SaurJH1_0376	-	N-acetylmuramoyl-L-alanine amidase
371	 37.50	+1	403688..403855	+	55	150392851	-	SaurJH1_0377	-	hypothetical protein
372	 36.56	+1	403901..403993	+	30	150392852	-	SaurJH1_0378	-	hypothetical protein
373	 39.02	+1	404260..404382	+	40	150392853	-	SaurJH1_0379	-	lipase precursor
374	 34.06	0	404624..405451	-	275	150392854	-	SaurJH1_0380	-	hypothetical protein
375	 39.50	+1	405524..406723	-	399	150392855	-	SaurJH1_0381	-	NADH:flavin oxidoreductase/NADH oxidase
376	 37.62	+1	407025..408026	+	333	150392856	-	SaurJH1_0382	-	luciferase family protein
377	 36.34	0	408060..408392	+	110	150392857	-	SaurJH1_0383	-	glycine cleavage H-protein
378	 36.33	0	408393..409193	+	266	150392858	-	SaurJH1_0384	-	hypothetical protein
379	 37.04	+1	409183..410127	+	314	150392859	-	SaurJH1_0385	-	hypothetical protein
380	 34.12	0	410105..411127	+	340	150392860	-	SaurJH1_0386	-	lipoyltransferase and lipoate-protein ligase
381	 35.28	0	411443..412468	+	341	150392861	-	SaurJH1_0387	-	3-beta hydroxysteroid dehydrogenase/isomerase
382	 37.94	+1	412562..413908	-	448	150392862	ulaA	SaurJH1_0388	-	ascorbate-specific PTS system enzyme IIC
383	 35.44	0	413923..414207	-	94	150392863	-	SaurJH1_0389	-	phosphotransferase system lactose/cellobiose-specific IIB subunit
384	 35.36	0	414209..414652	-	147	150392864	-	SaurJH1_0390	-	phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2
385	 34.56	0	414657..416612	-	651	150392865	-	SaurJH1_0391	-	PRD domain-containing protein
386	 33.33	0	416824..417243	+	139	150392866	-	SaurJH1_0392	-	regulatory protein MarR
387	 32.82	0	417350..418705	+	451	150392867	-	SaurJH1_0393	-	MATE efflux family protein
388	 29.25	-1	418809..419249	+	146	150392868	-	SaurJH1_0394	-	hypothetical protein
389	 37.09	+1	419332..420690	-	452	150392869	-	SaurJH1_0395	-	glycerol-3-phosphate transporter
390	 34.30	0	421002..421928	+	308	150392870	-	SaurJH1_0396	-	glyoxalase/bleomycin resistance protein/dioxygenase
391	 36.63	+1	421942..423003	+	353	150392871	-	SaurJH1_0397	-	luciferase family protein
392	 33.33	0	423017..423583	+	188	150392872	-	SaurJH1_0398	-	NADPH-dependent FMN reductase
393	 34.94	0	423642..424637	-	331	150392873	-	SaurJH1_0399	-	hypothetical protein
394	 35.16	0	425002..425547	+	181	150392874	-	SaurJH1_0400	-	GCN5-related N-acetyltransferase
395	 30.99	0	425814..426668	+	284	150392875	-	SaurJH1_0401	-	hypothetical protein
396	 37.24	+1	426665..427894	+	409	150392876	-	SaurJH1_0402	-	Dyp-type peroxidase family protein
397	 34.27	0	427875..429587	+	570	150392877	-	SaurJH1_0403	-	hypothetical protein
398	 33.50	0	429828..430433	-	201	150392878	-	SaurJH1_0404	-	Sec-independent periplasmic protein translocase
399	 36.57	+1	430546..430761	-	71	150392879	-	SaurJH1_0405	-	twin arginine-targeting protein translocase
400	 33.33	0	430870..431259	-	129	150392880	-	SaurJH1_0406	-	hypothetical protein
401	 39.71	+1	431499..431702	+	67	150392881	-	SaurJH1_0407	-	helix-turn-helix domain-containing protein
402	 31.65	0	431699..432412	+	237	150392882	-	SaurJH1_0408	-	hypothetical protein
403	 31.79	0	432437..433279	+	280	150392883	-	SaurJH1_0409	-	ABC transporter related
404	 32.54	0	433279..433908	+	209	150392884	-	SaurJH1_0410	-	hypothetical protein
405	 31.75	0	434295..435428	-	377	150392885	-	SaurJH1_0411	-	hypothetical protein
406	 38.41	+1	435967..437148	+	393	150392886	-	SaurJH1_0412	-	acetyl-CoA acetyltransferase
407	 37.45	+1	437231..437983	-	250	150392887	-	SaurJH1_0413	-	hypothetical protein
408	 34.41	0	438026..440254	-	742	150392888	-	SaurJH1_0414	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
409	 36.10	0	440251..442092	-	613	150392889	-	SaurJH1_0415	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
410	 37.90	+1	442061..443221	-	386	150392890	-	SaurJH1_0416	-	cystathionine gamma-synthase
411	 35.42	0	443218..444321	-	367	150392891	-	SaurJH1_0417	-	cystathionine gamma-synthase
412	 32.15	0	444527..444865	+	112	150392892	-	SaurJH1_0418	-	hypothetical protein
413	 33.81	0	444992..445828	+	278	150392893	-	SaurJH1_0419	-	parB-like partition protein
414	 31.41	0	445982..446863	+	293	150392894	-	SaurJH1_0420	-	hypothetical protein
415	 30.88	0	446893..447096	+	67	150392895	-	SaurJH1_0421	-	hypothetical protein
416	 35.34	0	447108..448205	+	365	150392896	-	SaurJH1_0422	-	translation-associated GTPase
417	 32.29	0	448291..448482	-	63	150392897	-	SaurJH1_0423	-	hypothetical protein
418	 38.05	+1	448726..449022	+	98	150392898	rpsF	SaurJH1_0424	-	30S ribosomal protein S6
419	 38.29	+1	449043..449546	+	167	150392899	-	SaurJH1_0425	-	single-strand binding protein
420	 37.04	+1	449598..449840	+	80	150392900	rpsR	SaurJH1_0426	-	30S ribosomal protein S18
421	 28.00	-1	450117..451091	-	324	150392901	-	SaurJH1_0427	-	Abi family protein
422	 29.90	0	452013..452624	+	203	150392902	-	SaurJH1_0429	-	hypothetical protein
423	 31.44	0	452993..453361	+	122	150392903	-	SaurJH1_0430	-	hypothetical protein
424	 30.89	0	453542..454114	+	190	150392904	-	SaurJH1_0431	-	hypothetical protein
425	 29.17	-1	454251..454514	-	87	150392905	-	SaurJH1_0432	-	hypothetical protein
426	 36.90	+1	454814..455065	+	83	150392906	-	SaurJH1_0433	-	hypothetical protein
427	 27.62	-1	455104..455313	-	69	150392907	-	SaurJH1_0434	-	hypothetical protein
428	 31.96	0	455491..456072	+	193	150392908	-	SaurJH1_0435	-	phosphoglycerate mutase
429	 31.01	0	456138..456524	-	128	150392909	-	SaurJH1_0436	-	hypothetical protein
430	 30.46	0	456791..457417	-	208	150392910	-	SaurJH1_0437	-	hypothetical protein
431	 32.93	0	457490..457735	-	81	150392911	-	SaurJH1_0438	-	hypothetical protein
432	 37.99	+1	457861..459384	-	507	150392912	-	SaurJH1_0439	-	alkyl hydroperoxide reductase subunit F
433	 37.19	+1	459400..459969	-	189	150392913	-	SaurJH1_0440	-	alkyl hydroperoxide reductase subunit C
434	 37.43	+1	460461..461216	+	251	150392914	-	SaurJH1_0441	-	nitroreductase
435	 39.31	+1	461296..462684	-	462	150392915	-	SaurJH1_0442	-	sodium:dicarboxylate symporter
436	 37.62	+1	463662..464618	-	318	150392916	-	SaurJH1_0443	-	hypothetical protein
437	 30.17	0	464736..465398	-	220	150392917	-	SaurJH1_0444	-	hypothetical protein
438	 32.84	0	465541..465948	-	135	150392918	-	SaurJH1_0445	-	hypothetical protein
439	 35.58	0	466461..467039	+	192	150392919	-	SaurJH1_0446	-	xanthine phosphoribosyltransferase
440	 35.54	0	467039..468307	+	422	150392920	-	SaurJH1_0447	-	uracil-xanthine permease
441	 37.29	+1	468345..469811	+	488	150392921	-	SaurJH1_0448	-	inosine-5'-monophosphate dehydrogenase
442	 37.29	+1	469836..471377	+	513	150392922	guaA	SaurJH1_0449	-	bifunctional GMP synthase/glutamine amidotransferase protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.