IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
245	 35.56	0	298355..300109	+	584	150392725	-	SaurJH1_0251	-	5TM Receptors of the LytS-YhcK type transmembrane region
246	 32.39	0	300112..300852	+	246	150392726	-	SaurJH1_0252	-	response regulator receiver
247	 34.47	0	300971..301408	+	145	150392727	-	SaurJH1_0253	-	murein hydrolase regulator LrgA
248	 36.61	+1	301401..302102	+	233	150392728	-	SaurJH1_0254	-	antiholin-like protein LrgB
249	 33.05	0	302210..302914	-	234	150392729	-	SaurJH1_0255	-	UbiC transcription regulator-associated domain-containing protein
250	 35.23	0	303063..303854	+	263	150392730	-	SaurJH1_0256	-	PTS system, glucose subfamily, IIA subunit
251	 36.67	+1	303870..305306	+	478	150392731	-	SaurJH1_0257	-	glycoside hydrolase family protein
252	 34.12	0	305683..306444	-	253	150392732	-	SaurJH1_0258	-	hypothetical protein
253	 37.70	+1	306695..307609	-	304	150392733	-	SaurJH1_0259	-	ribokinase
254	 32.59	0	307637..308041	-	134	150392734	-	SaurJH1_0260	-	D-ribose pyranase
255	 37.98	+1	308056..308937	-	293	150392735	-	SaurJH1_0261	-	sugar transport family protein
256	 37.24	+1	309169..310167	-	332	150392736	-	SaurJH1_0262	-	regulatory protein LacI
257	 19.30	-2	310384..310497	+	37	150392737	-	SaurJH1_0263	-	NADH dehydrogenase subunit, putative
258	 26.72	-1	310547..310939	+	130	150392738	-	SaurJH1_0264	-	hypothetical protein
259	 37.69	+1	311067..312443	-	458	150392739	-	SaurJH1_0265	-	major facilitator transporter
260	 35.95	0	312677..313669	+	330	150392740	-	SaurJH1_0266	-	penicillin amidase
261	 39.75	+1	313995..314945	+	316	150392741	-	SaurJH1_0267	-	peptidoglycan hydrolase
262	 31.36	0	314997..315656	-	219	150392742	-	SaurJH1_0268	-	ABC transporter related
263	 31.38	0	315670..316590	-	306	150392743	-	SaurJH1_0269	-	hypothetical protein
264	 32.22	0	316587..317753	-	388	150392744	-	SaurJH1_0270	-	hypothetical protein
265	 29.00	-1	317821..319344	-	507	150392745	-	SaurJH1_0271	-	hypothetical protein
266	 37.21	+1	319675..320577	-	300	150392746	-	SaurJH1_0272	-	CHAP domain-containing protein
267	 37.76	+1	320816..321109	+	97	150392747	-	SaurJH1_0273	-	hypothetical protein
268	 30.79	0	321192..324221	+	1009	150392748	-	SaurJH1_0274	-	hypothetical protein
269	 32.46	0	324221..324679	+	152	150392749	-	SaurJH1_0275	-	hypothetical protein
270	 29.22	-1	324651..324893	+	80	150392750	-	SaurJH1_0276	-	hypothetical protein
271	 29.81	0	324906..326240	+	444	150392751	-	SaurJH1_0277	-	hypothetical protein
272	 33.90	0	326262..330701	+	1479	150392752	-	SaurJH1_0278	-	cell division protein FtsK/SpoIIIE
273	 31.04	0	330731..331123	+	130	150392753	-	SaurJH1_0279	-	hypothetical protein
274	 38.41	+1	331139..331453	+	104	150392754	-	SaurJH1_0280	-	hypothetical protein
275	 29.06	-1	331450..332127	+	225	150392755	-	SaurJH1_0281	-	hypothetical protein
276	 37.11	+1	332127..332444	+	105	150392756	-	SaurJH1_0282	-	hypothetical protein
277	 34.96	0	332454..334298	+	614	150392757	-	SaurJH1_0283	-	hypothetical protein
278	 31.30	0	334309..334800	+	163	150392758	-	SaurJH1_0284	-	hypothetical protein
279	 27.34	-1	335003..335686	+	227	150392759	-	SaurJH1_0285	-	hypothetical protein
280	 28.10	-1	335832..336443	+	203	150392760	-	SaurJH1_0286	-	hypothetical protein
281	 26.94	-1	336578..336796	+	72	150392761	-	SaurJH1_0287	-	hypothetical protein
282	 29.54	-1	336928..337428	+	166	150392762	-	SaurJH1_0288	-	hypothetical protein
283	 29.74	0	337439..337939	+	166	150392763	-	SaurJH1_0289	-	hypothetical protein
284	 29.44	-1	337950..338411	+	153	150392764	-	SaurJH1_0290	-	hypothetical protein
285	 29.94	0	338460..338960	+	166	150392765	-	SaurJH1_0291	-	hypothetical protein
286	 30.45	0	338971..339456	+	161	150392766	-	SaurJH1_0292	-	hypothetical protein
287	 26.72	-1	340078..340455	+	125	150392767	-	SaurJH1_0293	-	hypothetical protein
288	 31.58	0	340605..341003	+	132	150392768	-	SaurJH1_0294	-	hypothetical protein
289	 33.33	0	341219..342064	-	281	150392769	-	SaurJH1_0295	-	formate/nitrite transporter
290	 35.17	0	342280..343587	-	435	150392770	-	SaurJH1_0296	-	branched-chain amino acid transport system II carrier protein
291	 33.11	0	344171..345061	+	296	150392771	-	SaurJH1_0297	-	5'-nucleotidase
292	 33.14	0	345310..346359	+	349	150392772	-	SaurJH1_0298	-	hypothetical protein
293	 33.48	0	346372..347049	+	225	150392773	-	SaurJH1_0299	-	ABC transporter related
294	 38.28	+1	347257..348288	+	343	150392774	-	SaurJH1_0300	-	regulatory protein PfoR
295	 34.23	0	348631..349749	+	372	150392775	-	SaurJH1_0301	-	ribokinase-like domain-containing protein
296	 38.20	+1	349724..350647	+	307	150392776	-	SaurJH1_0302	-	hypothetical protein
297	 32.84	0	350658..351878	+	406	150392777	-	SaurJH1_0303	-	Na+ dependent nucleoside transporter
298	 35.55	0	351983..353515	-	510	150392778	-	SaurJH1_0304	-	SSS family solute/sodium (Na+) symporter
299	 35.26	0	353555..354436	-	293	150392779	-	SaurJH1_0305	-	N-acetylneuraminate lyase
300	 37.51	+1	354594..355454	+	286	150392780	-	SaurJH1_0306	-	ROK family protein
301	 33.46	0	355731..356531	-	266	150392781	-	SaurJH1_0307	-	hypothetical protein
302	 38.12	+1	356671..357339	+	222	150392782	-	SaurJH1_0308	-	N-acetylmannosamine-6-phosphate 2-epimerase
303	 36.07	0	357470..358783	-	437	150392783	-	SaurJH1_0309	-	nucleoside recognition domain-containing protein
304	 37.62	+1	359201..361138	+	645	150392784	-	SaurJH1_0310	-	triacylglycerol lipase
305	 31.92	0	361229..362434	-	401	150392785	-	SaurJH1_0311	-	phage integrase family protein
306	 23.33	-2	362545..362724	+	59	150392786	-	SaurJH1_0312	-	excisionase
307	 34.26	0	362739..362846	-	35	150392787	-	SaurJH1_0313	-	hypothetical protein
308	 28.05	-1	362850..363341	-	163	150392788	-	SaurJH1_0314	-	hypothetical protein
309	 33.77	0	363362..363823	-	153	150392789	-	SaurJH1_0315	-	hypothetical protein
310	 32.41	0	363836..364159	-	107	150392790	-	SaurJH1_0316	-	helix-turn-helix domain-containing protein
311	 31.33	0	364323..364571	+	82	150392791	-	SaurJH1_0317	-	helix-turn-helix domain-containing protein
312	 29.01	-1	364586..364747	+	53	150392792	-	SaurJH1_0318	-	hypothetical protein
313	 31.73	0	364740..364988	-	82	150392793	-	SaurJH1_0319	-	hypothetical protein
314	 36.56	+1	365427..365612	+	61	150392794	-	SaurJH1_0320	-	helix-turn-helix domain-containing protein
315	 34.93	0	365614..366366	+	250	150392795	-	SaurJH1_0321	-	phage antirepressor protein
316	 40.64	+2	366382..366600	+	72	150392796	-	SaurJH1_0322	-	phi PV83 orf 10-like protein
317	 31.44	0	366630..366893	+	87	150392797	-	SaurJH1_0323	-	phiSLT ORF 87-like protein, putative DNA-binding protein
318	 35.19	0	366905..367066	+	53	150392798	-	SaurJH1_0324	-	hypothetical protein
319	 31.68	0	367161..367463	+	100	150392799	-	SaurJH1_0325	-	hypothetical protein
320	 32.57	0	367468..367728	+	86	150392800	-	SaurJH1_0326	-	hypothetical protein
321	 32.58	0	367737..368000	+	87	150392801	-	SaurJH1_0327	-	hypothetical protein
322	 30.61	0	368009..369952	+	647	150392802	-	SaurJH1_0328	-	hypothetical protein
323	 34.53	0	369954..370874	+	306	150392803	-	SaurJH1_0329	-	RecT protein
324	 35.19	0	371087..371572	+	161	150392804	-	SaurJH1_0330	-	hypothetical protein
325	 35.88	0	371573..372043	+	156	150392805	-	SaurJH1_0331	-	single-strand binding protein
326	 33.67	0	372073..372966	+	297	150392806	-	SaurJH1_0332	-	primosome, DnaD subunit
327	 29.68	0	372973..373191	+	72	150392807	-	SaurJH1_0333	-	hypothetical protein
328	 36.30	0	373200..373604	+	134	150392808	-	SaurJH1_0334	-	endodeoxyribonuclease RusA
329	 38.75	+1	373617..373985	+	122	150392809	-	SaurJH1_0335	-	PVL ORF-50 family protein
330	 38.68	+1	373989..374231	+	80	150392810	-	SaurJH1_0336	-	phage conserved Open Reading Frame 51
331	 31.48	0	374236..374451	+	71	150392811	-	SaurJH1_0337	-	hypothetical protein
332	 34.58	0	374454..374855	+	133	150392812	-	SaurJH1_0338	-	hypothetical protein
333	 28.74	-1	374852..375199	+	115	150392813	-	SaurJH1_0339	-	hypothetical protein
334	 32.69	0	375196..375504	+	102	150392814	-	SaurJH1_0340	-	PV83 orf 27-like protein
335	 38.55	+1	375497..375745	+	82	150392815	-	SaurJH1_0341	-	hypothetical protein
336	 31.28	0	375738..376274	+	178	150392816	-	SaurJH1_0342	-	dUTPase
337	 35.02	0	376311..376547	+	78	150392817	-	SaurJH1_0343	-	hypothetical protein
338	 30.80	0	376572..376808	+	78	150392818	-	SaurJH1_0344	-	hypothetical protein
339	 30.51	0	376798..377187	+	129	150392819	-	SaurJH1_0345	-	hypothetical protein
340	 39.08	+1	377184..377357	+	57	150392820	-	SaurJH1_0346	-	transcriptional activator RinB
341	 27.87	-1	377358..377723	+	121	150392821	-	SaurJH1_0347	-	hypothetical protein
342	 32.65	0	377724..377870	+	48	150392822	-	SaurJH1_0348	-	hypothetical protein
343	 32.39	0	377894..378316	+	140	150392823	-	SaurJH1_0349	-	RinA family phage transcriptional regulator
344	 36.16	0	378644..379138	+	164	150392824	-	SaurJH1_0350	-	hypothetical protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.