IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2648	 34.58	0	2793215..2795065	-	616	150395128	-	SaurJH1_2694	-	anaerobic ribonucleoside triphosphate reductase
2649	 36.32	0	2795255..2796625	-	456	150395129	-	SaurJH1_2695	-	CitMHS family citrate/H+ symporter
2650	 29.17	-1	2796947..2797042	-	31	150395130	-	SaurJH1_2696	-	hypothetical protein
2651	 37.29	+1	2797118..2797723	-	201	150395131	-	SaurJH1_2697	-	precorrin-2 dehydrogenase
2652	 34.88	0	2797786..2799666	-	626	150395132	-	SaurJH1_2698	-	sulfite reductase (NADPH) flavoprotein, alpha chain
2653	 31.12	0	2800060..2800557	-	165	150395133	-	SaurJH1_2699	-	peroxiredoxin
2654	 31.80	0	2800567..2800827	-	86	150395134	-	SaurJH1_2700	-	hypothetical protein
2655	 31.48	0	2801981..2803981	-	666	150395135	-	SaurJH1_2701	-	hypothetical protein
2656	 34.92	0	2803978..2804733	-	251	150395136	-	SaurJH1_2702	-	ABC transporter related
2657	 29.95	0	2804841..2805728	-	295	150395137	-	SaurJH1_2703	-	ATPase domain-containing protein
2658	 29.88	0	2805739..2806404	-	221	150395138	-	SaurJH1_2704	-	response regulator receiver
2659	 31.34	0	2806430..2806630	-	66	150395139	-	SaurJH1_2705	-	hypothetical protein
2660	 35.09	0	2806828..2808252	+	474	150395140	-	SaurJH1_2706	-	alkaline phosphatase
2661	 30.48	0	2808312..2808416	-	34	150395141	-	SaurJH1_2707	-	hypothetical protein
2662	 32.24	0	2808535..2808990	-	151	150395142	-	SaurJH1_2708	-	regulatory protein MarR
2663	 32.94	0	2809235..2809996	-	253	150395143	-	SaurJH1_2709	-	putative esterase
2664	 38.69	+1	2810112..2812745	-	877	150395144	-	SaurJH1_2710	-	cell wall anchor domain-containing protein
2665	 29.22	-1	2813095..2813799	-	234	150395145	-	SaurJH1_2711	-	cyclic nucleotide-binding protein
2666	 37.05	+1	2813898..2814866	-	322	150395146	-	SaurJH1_2712	-	carbamate kinase
2667	 35.15	0	2814856..2816286	-	476	150395147	-	SaurJH1_2713	-	arginine/ornithine antiporter
2668	 33.14	0	2816377..2817387	-	336	150395148	-	SaurJH1_2714	-	ornithine carbamoyltransferase
2669	 34.55	0	2817420..2818655	-	411	150395149	-	SaurJH1_2715	-	arginine deiminase
2670	 29.33	-1	2819002..2819451	-	149	150395150	-	SaurJH1_2716	-	arginine repressor
2671	 35.82	0	2819818..2821347	-	509	150395151	-	SaurJH1_2717	-	zinc metalloproteinase aureolysin
2672	 30.87	0	2821771..2822298	-	175	150395152	-	SaurJH1_2718	-	immunodominant antigen B
2673	 33.55	0	2822556..2823014	+	152	150395153	-	SaurJH1_2719	-	hypothetical protein
2674	 30.99	0	2823254..2825128	+	624	150395154	-	SaurJH1_2720	-	PRD domain-containing protein
2675	 38.30	+1	2825204..2827156	+	650	150395155	-	SaurJH1_2721	-	PTS system, fructose subfamily, IIC subunit
2676	 35.46	0	2827170..2828108	+	312	150395156	-	SaurJH1_2722	-	mannose-6-phosphate isomerase
2677	 34.88	0	2828220..2831201	-	993	150395157	-	SaurJH1_2723	-	ABC-2 type transporter
2678	 32.74	0	2831412..2833271	+	619	150395158	-	SaurJH1_2724	-	N-acetylmuramoyl-L-alanine amidase
2679	 34.94	0	2833536..2834096	-	186	150395159	-	SaurJH1_2725	-	isochorismatase hydrolase
2680	 32.18	0	2834265..2836172	-	635	150395160	-	SaurJH1_2726	-	cell wall anchor domain-containing protein
2681	 33.26	0	2836413..2837771	-	452	150395161	-	SaurJH1_2727	-	hypothetical protein
2682	 34.46	0	2837764..2839272	-	502	150395162	-	SaurJH1_2728	-	hypothetical protein
2683	 34.13	0	2839290..2841680	-	796	150395163	-	SaurJH1_2729	-	preprotein translocase subunit SecA
2684	 32.60	0	2841670..2842629	-	319	150395164	-	SaurJH1_2730	-	hypothetical protein
2685	 36.01	0	2842607..2844175	-	522	150395165	-	SaurJH1_2731	-	hypothetical protein
2686	 34.04	0	2844165..2845718	-	517	150395166	-	SaurJH1_2732	-	hypothetical protein
2687	 28.63	-1	2845729..2846940	-	403	150395167	secY	SaurJH1_2733	-	preprotein translocase subunit SecY
2688	 38.51	+1	2847070..2853885	-	2271	150395168	-	SaurJH1_2734	-	cell wall anchor domain-containing protein
2689	 20.72	-2	2854238..2854348	-	36	150395169	-	SaurJH1_2735	-	hypothetical protein
2690	 38.10	+1	2854429..2855121	-	230	150395170	-	SaurJH1_2736	-	hypothetical protein
2691	 30.54	0	2855387..2855815	+	142	150395171	-	SaurJH1_2737	-	hypothetical protein
2692	 32.68	0	2855799..2856104	+	101	150395172	-	SaurJH1_2738	-	hypothetical protein
2693	 34.72	0	2856258..2856617	+	119	150395173	-	SaurJH1_2739	-	hypothetical protein
2694	 34.97	0	2856702..2857313	-	203	150395174	-	SaurJH1_2740	-	hypothetical protein
2695	 35.22	0	2857392..2857868	-	158	150395175	-	SaurJH1_2741	-	methionine sulfoxide reductase A
2696	 32.93	0	2857871..2858371	-	166	150395176	-	SaurJH1_2742	-	GCN5-related N-acetyltransferase
2697	 32.16	0	2858606..2859373	-	255	150395177	-	SaurJH1_2743	-	protein-tyrosine-phosphatase
2698	 35.79	0	2859370..2860062	-	230	150395178	-	SaurJH1_2744	-	exopolysaccharide tyrosine-protein kinase
2699	 28.96	-1	2860079..2860741	-	220	150395179	-	SaurJH1_2745	-	lipopolysaccharide biosynthesis protein
2700	 27.63	-1	2861590..2862150	-	186	150395180	-	SaurJH1_2746	-	regulatory protein TetR
2701	 34.75	0	2862353..2863552	+	399	150395181	-	SaurJH1_2747	-	N-glycosyltransferase PgaC
2702	 31.70	0	2863516..2863821	+	101	150395182	-	SaurJH1_2748	-	hypothetical protein
2703	 29.21	-1	2863818..2864690	+	290	150395183	-	SaurJH1_2749	-	intercellular adhesion protein B
2704	 27.16	-1	2864677..2865729	+	350	150395184	-	SaurJH1_2750	-	intercellular adhesion protein C, putative
2705	 34.36	0	2866062..2868107	-	681	150395185	-	SaurJH1_2751	-	triacylglycerol lipase
2706	 27.70	-1	2868825..2869037	-	70	150395186	-	SaurJH1_2752	-	hypothetical protein
2707	 34.12	0	2869197..2869829	-	210	150395187	-	SaurJH1_2753	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2708	 36.89	+1	2869826..2870584	-	252	150395188	-	SaurJH1_2754	-	imidazoleglycerol phosphate synthase, cyclase subunit
2709	 38.87	+1	2870581..2871285	-	234	150395189	-	SaurJH1_2755	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2710	 36.79	+1	2871278..2871856	-	192	150395190	hisH	SaurJH1_2756	-	imidazole glycerol phosphate synthase subunit HisH
2711	 36.79	+1	2871853..2872431	-	192	150395191	-	SaurJH1_2757	-	imidazoleglycerol-phosphate dehydratase
2712	 34.71	0	2872400..2873413	-	337	150395192	-	SaurJH1_2758	-	aminotransferase class I and II
2713	 36.05	0	2873429..2874679	-	416	150395193	-	SaurJH1_2759	-	histidinol dehydrogenase
2714	 33.66	0	2874672..2875286	-	204	150395194	hisG	SaurJH1_2760	-	ATP phosphoribosyltransferase catalytic subunit
2715	 35.29	0	2875304..2876122	-	272	150395195	hisZ	SaurJH1_2761	-	ATP phosphoribosyltransferase regulatory subunit
2716	 32.36	0	2876426..2877550	-	374	150395196	-	SaurJH1_2762	-	hypothetical protein
2717	 29.72	0	2877668..2878165	-	165	150395197	-	SaurJH1_2763	-	hypothetical protein
2718	 29.74	0	2878212..2879045	-	277	150395198	-	SaurJH1_2764	-	cobalt transport protein
2719	 33.45	0	2879042..2880754	-	570	150395199	-	SaurJH1_2765	-	ABC transporter related
2720	 32.25	0	2880807..2881361	-	184	150395200	-	SaurJH1_2766	-	hypothetical protein
2721	 34.86	0	2881390..2882238	-	282	150395201	-	SaurJH1_2767	-	hypothetical protein
2722	 33.33	0	2882617..2883132	+	171	150395202	-	SaurJH1_2768	-	hypothetical protein
2723	 35.69	0	2883283..2884257	-	324	150395203	-	SaurJH1_2769	-	SMP-30/gluconolaconase/LRE domain-containing protein
2724	 35.21	0	2884498..2885454	+	318	150395204	-	SaurJH1_2770	-	hypothetical protein
2725	 37.25	+1	2885606..2886244	+	212	150395205	-	SaurJH1_2771	-	pyrrolidone-carboxylate peptidase
2726	 28.65	-1	2886363..2887130	-	255	150395206	-	SaurJH1_2772	-	hypothetical protein
2727	 35.99	0	2887120..2887458	-	112	150395207	-	SaurJH1_2773	-	transcriptional regulator PadR family protein
2728	 32.26	0	2887625..2888089	+	154	150395208	-	SaurJH1_2774	-	hypothetical protein
2729	 38.27	+1	2888327..2889745	+	472	150395209	-	SaurJH1_2775	-	anion transporter
2730	 33.99	0	2890159..2891067	-	302	150395210	-	SaurJH1_2776	-	transporter DMT superfamily protein
2731	 34.72	0	2891289..2891864	+	191	150395211	-	SaurJH1_2777	-	hypothetical protein
2732	 34.19	0	2891990..2893042	+	350	150395212	-	SaurJH1_2778	-	high-affinity nickel-transporter
2733	 30.34	0	2893279..2894079	+	266	150395213	-	SaurJH1_2779	-	N-acetyltransferase
2734	 30.99	0	2894213..2894725	-	170	150395214	-	SaurJH1_2780	-	hypothetical protein
2735	 36.10	0	2895008..2895766	+	252	150395215	-	SaurJH1_2781	-	ABC transporter related
2736	 31.37	0	2895756..2897636	+	626	150395216	-	SaurJH1_2782	-	hypothetical protein
2737	 30.73	0	2897728..2897919	+	63	150395217	-	SaurJH1_2783	-	hypothetical protein
2738	 38.31	+1	2898311..2898511	+	66	150395218	-	SaurJH1_2784	-	cold-shock protein DNA-binding
2739	 31.58	0	2898629..2899198	-	189	150395219	-	SaurJH1_2785	-	helix-turn-helix domain-containing protein
2740	 34.60	0	2899458..2899853	-	131	150395220	-	SaurJH1_2786	-	hypothetical protein
2741	 36.44	+1	2899921..2900274	-	117	150395221	-	SaurJH1_2787	-	hypothetical protein
2742	 35.36	0	2900725..2901564	-	279	150395222	-	SaurJH1_2788	-	parB-like partition protein
2743	 33.61	0	2901607..2902326	-	239	150395223	gidB	SaurJH1_2789	-	glucose-inhibited division protein B
2744	 35.41	0	2902326..2904203	-	625	150395224	-	SaurJH1_2790	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2745	 34.20	0	2904270..2905649	-	459	150395225	trmE	SaurJH1_2791	-	tRNA modification GTPase TrmE
2746	 29.10	-1	2905806..2906159	-	117	150395226	rnpA	SaurJH1_2792	-	ribonuclease P
2747	 37.68	+1	2906280..2906417	-	45	150395227	rpmH	SaurJH1_2793	-	50S ribosomal protein L34
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.