IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2588	 37.73	+1	2731019..2733427	+	802	150395068	-	SaurJH1_2633	-	copper-translocating P-type ATPase
2589	 35.75	0	2733838..2734044	+	68	150395069	-	SaurJH1_2634	-	copper ion binding protein
2590	 36.64	+1	2734135..2735133	-	332	150395070	-	SaurJH1_2635	-	D-lactate dehydrogenase
2591	 36.36	0	2735156..2736310	-	384	150395071	-	SaurJH1_2636	-	aminotransferase class I and II
2592	 35.32	0	2736738..2738246	-	502	150395072	-	SaurJH1_2637	-	squalene synthase
2593	 31.48	0	2738258..2739121	-	287	150395073	-	SaurJH1_2638	-	squalene/phytoene synthase
2594	 36.26	0	2739158..2740285	-	375	150395074	-	SaurJH1_2639	-	glycosyl transferase family protein
2595	 35.48	0	2740291..2741784	-	497	150395075	-	SaurJH1_2640	-	zeta-phytoene desaturase
2596	 29.12	-1	2741777..2742274	-	165	150395076	-	SaurJH1_2641	-	hypothetical protein
2597	 36.85	+1	2742440..2743207	-	255	150395077	-	SaurJH1_2642	-	CHAP domain-containing protein
2598	 31.29	0	2743319..2743465	-	48	150395078	-	SaurJH1_2643	-	hypothetical protein
2599	 33.44	0	2743568..2745379	-	603	150395079	-	SaurJH1_2644	-	acyltransferase 3
2600	 41.74	+2	2746655..2747356	-	233	150395080	-	SaurJH1_2646	-	transglycosylase domain-containing protein
2601	 36.27	0	2747964..2749019	-	351	150395081	-	SaurJH1_2647	-	hypothetical protein
2602	 32.99	0	2749411..2749998	+	195	150395082	-	SaurJH1_2648	-	regulatory protein TetR
2603	 35.33	0	2750196..2750696	+	166	150395083	-	SaurJH1_2649	-	hypothetical protein
2604	 32.90	0	2750916..2751146	+	76	150395084	-	SaurJH1_2650	-	hypothetical protein
2605	 34.39	0	2751448..2751825	-	125	150395085	-	SaurJH1_2651	-	glyoxalase/bleomycin resistance protein/dioxygenase
2606	 32.73	0	2751842..2752663	-	273	150395086	-	SaurJH1_2652	-	hypothetical protein
2607	 33.67	0	2752683..2752982	-	99	150395087	-	SaurJH1_2653	-	hypothetical protein
2608	 31.36	0	2753113..2753670	+	185	150395088	-	SaurJH1_2654	-	regulatory protein TetR
2609	 38.30	+1	2753663..2754367	+	234	150395089	-	SaurJH1_2655	-	short-chain dehydrogenase/reductase SDR
2610	 34.22	0	2754465..2755475	+	336	150395090	-	SaurJH1_2656	-	amidohydrolase 2
2611	 37.67	+1	2755495..2756325	+	276	150395091	-	SaurJH1_2657	-	alpha/beta hydrolase fold
2612	 35.35	0	2756472..2757362	-	296	150395092	-	SaurJH1_2658	-	cobalamin synthesis protein P47K
2613	 34.30	0	2757459..2758799	-	446	150395093	-	SaurJH1_2659	-	nucleoside recognition domain-containing protein
2614	 35.95	0	2758793..2759899	-	368	150395094	-	SaurJH1_2660	-	hypothetical protein
2615	 27.27	-1	2760232..2760528	-	98	150395095	-	SaurJH1_2661	-	hypothetical protein
2616	 37.40	+1	2760516..2760884	-	122	150395096	-	SaurJH1_2662	-	hypothetical protein
2617	 31.52	0	2760899..2761174	-	91	150395097	-	SaurJH1_2663	-	hypothetical protein
2618	 37.02	+1	2761518..2762384	-	288	150395098	-	SaurJH1_2664	-	hypothetical protein
2619	 35.68	0	2762602..2763666	+	354	150395099	-	SaurJH1_2665	-	dihydroorotate dehydrogenase 2
2620	 30.07	0	2763821..2764096	+	91	150395100	-	SaurJH1_2666	-	hypothetical protein
2621	 33.61	0	2764282..2765004	-	240	150395101	-	SaurJH1_2667	-	hypothetical protein
2622	 36.22	0	2765358..2765807	+	149	150395102	-	SaurJH1_2668	-	hypothetical protein
2623	 30.27	0	2765888..2766475	-	195	150395103	-	SaurJH1_2669	-	hypothetical protein
2624	 36.78	+1	2766618..2768300	+	560	150395104	-	SaurJH1_2670	-	X-Pro dipeptidyl-peptidase domain-containing protein
2625	 31.63	0	2768398..2769042	-	214	150395105	-	SaurJH1_2671	-	cell wall anchor domain-containing protein
2626	 29.25	-1	2769049..2770125	-	358	150395106	-	SaurJH1_2672	-	peptidase S1 and S6 chymotrypsin/Hap
2627	 32.81	0	2770468..2770851	-	127	150395107	-	SaurJH1_2673	-	aspartate alpha-decarboxylase
2628	 36.27	0	2770853..2771704	-	283	150395108	panC	SaurJH1_2674	-	pantoate--beta-alanine ligase
2629	 36.26	0	2771697..2772515	-	272	150395109	panB	SaurJH1_2675	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2630	 37.40	+1	2772588..2773448	+	286	150395110	-	SaurJH1_2676	-	2-dehydropantoate 2-reductase
2631	 36.31	0	2773534..2774238	-	234	150395111	-	SaurJH1_2677	-	acetolactate decarboxylase
2632	 35.42	0	2774516..2775475	-	319	150395112	-	SaurJH1_2678	-	L-lactate dehydrogenase
2633	 37.27	+1	2776161..2777609	+	482	150395113	-	SaurJH1_2679	-	amino acid permease-associated region
2634	 38.12	+1	2777690..2779027	-	445	150395114	-	SaurJH1_2680	-	4-aminobutyrate aminotransferase
2635	 28.17	-1	2779276..2779701	+	141	150395115	-	SaurJH1_2681	-	hypothetical protein
2636	 33.89	0	2779824..2780714	+	296	150395116	-	SaurJH1_2682	-	fructose-1,6-bisphosphate aldolase
2637	 36.34	0	2780908..2782404	-	498	150395117	-	SaurJH1_2683	-	malate:quinone oxidoreductase
2638	 28.86	-1	2782829..2783029	+	66	150395118	-	SaurJH1_2684	-	hypothetical protein
2639	 36.36	0	2783089..2784708	-	539	150395119	-	SaurJH1_2685	-	AMP-dependent synthetase and ligase
2640	 30.42	0	2784881..2785360	-	159	150395120	-	SaurJH1_2686	-	hypothetical protein
2641	 27.70	-1	2785604..2785816	-	70	150395121	-	SaurJH1_2687	-	hypothetical protein
2642	 38.77	+1	2786094..2787803	-	569	150395122	-	SaurJH1_2688	-	choline dehydrogenase
2643	 36.82	+1	2788064..2789554	-	496	150395123	-	SaurJH1_2689	-	betaine aldehyde dehydrogenase
2644	 35.11	0	2789807..2790370	+	187	150395124	-	SaurJH1_2690	-	hypothetical protein
2645	 35.49	0	2790541..2792163	-	540	150395125	-	SaurJH1_2691	-	choline transporter
2646	 22.22	-2	2792295..2792456	+	53	150395126	-	SaurJH1_2692	-	hypothetical protein
2647	 32.22	0	2792682..2793218	-	178	150395127	-	SaurJH1_2693	-	anaerobic ribonucleoside-triphosphate reductase activating protein
2648	 34.58	0	2793215..2795065	-	616	150395128	-	SaurJH1_2694	-	anaerobic ribonucleoside triphosphate reductase
2649	 36.32	0	2795255..2796625	-	456	150395129	-	SaurJH1_2695	-	CitMHS family citrate/H+ symporter
2650	 29.17	-1	2796947..2797042	-	31	150395130	-	SaurJH1_2696	-	hypothetical protein
2651	 37.29	+1	2797118..2797723	-	201	150395131	-	SaurJH1_2697	-	precorrin-2 dehydrogenase
2652	 34.88	0	2797786..2799666	-	626	150395132	-	SaurJH1_2698	-	sulfite reductase (NADPH) flavoprotein, alpha chain
2653	 31.12	0	2800060..2800557	-	165	150395133	-	SaurJH1_2699	-	peroxiredoxin
2654	 31.80	0	2800567..2800827	-	86	150395134	-	SaurJH1_2700	-	hypothetical protein
2655	 31.48	0	2801981..2803981	-	666	150395135	-	SaurJH1_2701	-	hypothetical protein
2656	 34.92	0	2803978..2804733	-	251	150395136	-	SaurJH1_2702	-	ABC transporter related
2657	 29.95	0	2804841..2805728	-	295	150395137	-	SaurJH1_2703	-	ATPase domain-containing protein
2658	 29.88	0	2805739..2806404	-	221	150395138	-	SaurJH1_2704	-	response regulator receiver
2659	 31.34	0	2806430..2806630	-	66	150395139	-	SaurJH1_2705	-	hypothetical protein
2660	 35.09	0	2806828..2808252	+	474	150395140	-	SaurJH1_2706	-	alkaline phosphatase
2661	 30.48	0	2808312..2808416	-	34	150395141	-	SaurJH1_2707	-	hypothetical protein
2662	 32.24	0	2808535..2808990	-	151	150395142	-	SaurJH1_2708	-	regulatory protein MarR
2663	 32.94	0	2809235..2809996	-	253	150395143	-	SaurJH1_2709	-	putative esterase
2664	 38.69	+1	2810112..2812745	-	877	150395144	-	SaurJH1_2710	-	cell wall anchor domain-containing protein
2665	 29.22	-1	2813095..2813799	-	234	150395145	-	SaurJH1_2711	-	cyclic nucleotide-binding protein
2666	 37.05	+1	2813898..2814866	-	322	150395146	-	SaurJH1_2712	-	carbamate kinase
2667	 35.15	0	2814856..2816286	-	476	150395147	-	SaurJH1_2713	-	arginine/ornithine antiporter
2668	 33.14	0	2816377..2817387	-	336	150395148	-	SaurJH1_2714	-	ornithine carbamoyltransferase
2669	 34.55	0	2817420..2818655	-	411	150395149	-	SaurJH1_2715	-	arginine deiminase
2670	 29.33	-1	2819002..2819451	-	149	150395150	-	SaurJH1_2716	-	arginine repressor
2671	 35.82	0	2819818..2821347	-	509	150395151	-	SaurJH1_2717	-	zinc metalloproteinase aureolysin
2672	 30.87	0	2821771..2822298	-	175	150395152	-	SaurJH1_2718	-	immunodominant antigen B
2673	 33.55	0	2822556..2823014	+	152	150395153	-	SaurJH1_2719	-	hypothetical protein
2674	 30.99	0	2823254..2825128	+	624	150395154	-	SaurJH1_2720	-	PRD domain-containing protein
2675	 38.30	+1	2825204..2827156	+	650	150395155	-	SaurJH1_2721	-	PTS system, fructose subfamily, IIC subunit
2676	 35.46	0	2827170..2828108	+	312	150395156	-	SaurJH1_2722	-	mannose-6-phosphate isomerase
2677	 34.88	0	2828220..2831201	-	993	150395157	-	SaurJH1_2723	-	ABC-2 type transporter
2678	 32.74	0	2831412..2833271	+	619	150395158	-	SaurJH1_2724	-	N-acetylmuramoyl-L-alanine amidase
2679	 34.94	0	2833536..2834096	-	186	150395159	-	SaurJH1_2725	-	isochorismatase hydrolase
2680	 32.18	0	2834265..2836172	-	635	150395160	-	SaurJH1_2726	-	cell wall anchor domain-containing protein
2681	 33.26	0	2836413..2837771	-	452	150395161	-	SaurJH1_2727	-	hypothetical protein
2682	 34.46	0	2837764..2839272	-	502	150395162	-	SaurJH1_2728	-	hypothetical protein
2683	 34.13	0	2839290..2841680	-	796	150395163	-	SaurJH1_2729	-	preprotein translocase subunit SecA
2684	 32.60	0	2841670..2842629	-	319	150395164	-	SaurJH1_2730	-	hypothetical protein
2685	 36.01	0	2842607..2844175	-	522	150395165	-	SaurJH1_2731	-	hypothetical protein
2686	 34.04	0	2844165..2845718	-	517	150395166	-	SaurJH1_2732	-	hypothetical protein
2687	 28.63	-1	2845729..2846940	-	403	150395167	secY	SaurJH1_2733	-	preprotein translocase subunit SecY
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.