IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2420	 33.94	0	2548848..2549501	-	217	150394900	-	SaurJH1_2463	-	response regulator receiver
2421	 33.62	0	2549524..2550558	-	344	150394901	-	SaurJH1_2464	-	ATPase domain-containing protein
2422	 33.11	0	2550582..2551034	-	150	150394902	-	SaurJH1_2465	-	hypothetical protein
2423	 32.45	0	2551054..2551731	-	225	150394903	-	SaurJH1_2466	-	respiratory nitrate reductase, gamma subunit
2424	 30.03	0	2551724..2552299	-	191	150394904	-	SaurJH1_2467	-	nitrate reductase molybdenum cofactor assembly chaperone
2425	 37.88	+1	2552292..2553851	-	519	150394905	-	SaurJH1_2468	-	nitrate reductase, beta subunit
2426	 37.83	+1	2557789..2558766	-	325	150394906	-	SaurJH1_2470	-	uroporphyrin-III C-methyltransferase
2427	 35.24	0	2558757..2559071	-	104	150394907	-	SaurJH1_2471	-	nitrite reductase (NAD(P)H), small subunit
2428	 36.41	+1	2559075..2561480	-	801	150394908	-	SaurJH1_2472	-	nitrite reductase (NAD(P)H), large subunit
2429	 35.52	0	2561546..2562277	-	243	150394909	-	SaurJH1_2473	-	cobalamin (vitamin B12) biosynthesis CbiX protein
2430	 36.69	+1	2562507..2563043	-	178	150394910	-	SaurJH1_2474	-	GCN5-related N-acetyltransferase
2431	 33.82	0	2563277..2564101	-	274	150394911	-	SaurJH1_2475	-	formate/nitrite transporter
2432	 24.04	-2	2564318..2564500	-	60	150394912	-	SaurJH1_2476	-	hypothetical protein
2433	 33.97	0	2564584..2565051	-	155	150394913	-	SaurJH1_2477	-	activator of Hsp90 ATPase 1 family protein
2434	 31.91	0	2565237..2566784	-	515	150394914	-	SaurJH1_2478	-	ribulose-phosphate 3-epimerase
2435	 30.73	0	2567079..2567270	-	63	150394915	-	SaurJH1_2479	-	addiction module antitoxin
2436	 30.11	0	2567254..2567346	-	30	150394916	-	SaurJH1_2480	-	hypothetical protein
2437	 31.75	0	2567346..2567597	-	83	150394917	-	SaurJH1_2481	-	prevent-host-death family protein
2438	 29.67	0	2567870..2568469	-	199	150394918	-	SaurJH1_2482	-	putative lipoprotein
2439	 30.30	0	2568488..2568850	-	120	150394919	-	SaurJH1_2483	-	putative lipoprotein
2440	 33.33	0	2569105..2570355	+	416	150394920	-	SaurJH1_2484	-	methicillin resistance protein
2441	 34.56	0	2570452..2571183	-	243	150394921	-	SaurJH1_2485	-	ABC transporter related
2442	 33.61	0	2571180..2571899	-	239	150394922	-	SaurJH1_2486	-	polar amino acid ABC transporter, inner membrane subunit
2443	 31.54	0	2571880..2572659	-	259	150394923	-	SaurJH1_2487	-	extracellular solute-binding protein
2444	 34.10	0	2572780..2574219	-	479	150394924	-	SaurJH1_2488	-	EmrB/QacA family drug resistance transporter
2445	 30.48	0	2574393..2574497	+	34	150394925	-	SaurJH1_2489	-	hypothetical protein
2446	 33.48	0	2574651..2575337	-	228	150394926	-	SaurJH1_2490	-	phosphoglycerate mutase 1 family protein
2447	 33.45	0	2575664..2576530	-	288	150394927	-	SaurJH1_2491	-	cation diffusion facilitator family transporter
2448	 32.49	0	2577350..2578660	+	436	150394928	-	SaurJH1_2492	-	Ig-binding B domain-containing protein
2449	 32.09	0	2579205..2580170	+	321	150394929	-	SaurJH1_2493	-	beta-channel forming cytolysin
2450	 33.23	0	2580737..2581684	+	315	150394930	-	SaurJH1_2494	-	beta-channel forming cytolysin
2451	 32.00	0	2581686..2582663	+	325	150394931	-	SaurJH1_2495	-	beta-channel forming cytolysin
2452	 29.70	0	2582715..2583182	-	155	150394932	-	SaurJH1_2496	-	hypothetical protein
2453	 33.04	0	2583193..2583885	-	230	150394933	-	SaurJH1_2497	-	6-carboxyhexanoate--CoA ligase
2454	 30.47	0	2583896..2585011	-	371	150394934	-	SaurJH1_2498	-	8-amino-7-oxononanoate synthase
2455	 33.43	0	2584989..2585996	-	335	150394935	-	SaurJH1_2499	-	biotin synthase
2456	 33.63	0	2585998..2587356	-	452	150394936	-	SaurJH1_2500	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
2457	 31.88	0	2587334..2588020	-	228	150394937	-	SaurJH1_2501	-	dethiobiotin synthase
2458	 29.82	0	2588473..2590206	-	577	150394938	-	SaurJH1_2502	-	ABC transporter related
2459	 31.41	0	2590231..2591994	-	587	150394939	-	SaurJH1_2503	-	ABC transporter related
2460	 27.93	-1	2592560..2592670	-	36	150394940	-	SaurJH1_2504	-	hypothetical protein
2461	 33.73	0	2592701..2592955	+	84	150394941	-	SaurJH1_2505	-	hypothetical protein
2462	 29.20	-1	2592938..2593324	-	128	150394942	-	SaurJH1_2506	-	hypothetical protein
2463	 38.50	+1	2593592..2594734	+	380	150394943	-	SaurJH1_2507	-	glycerate kinase
2464	 31.52	0	2594794..2595453	+	219	150394944	-	SaurJH1_2508	-	hypothetical protein
2465	 35.07	0	2595635..2596846	+	403	150394945	-	SaurJH1_2509	-	Bcr/CflA subfamily drug resistance transporter
2466	 36.29	0	2596969..2597442	-	157	150394946	-	SaurJH1_2510	-	hypothetical protein
2467	 35.62	0	2597555..2598211	+	218	150394947	-	SaurJH1_2511	-	hypothetical protein
2468	 34.18	0	2598274..2599101	-	275	150394948	-	SaurJH1_2512	-	hypothetical protein
2469	 35.11	0	2599366..2600775	+	469	150394949	-	SaurJH1_2513	-	amino acid permease-associated region
2470	 32.37	0	2600913..2602991	+	692	150394950	-	SaurJH1_2514	-	sodium/hydrogen exchanger
2471	 34.04	0	2603132..2604961	-	609	150394951	-	SaurJH1_2515	-	hypothetical protein
2472	 31.60	0	2605193..2606689	+	498	150394952	-	SaurJH1_2516	-	beta-lactamase
2473	 35.68	0	2606781..2607632	-	283	150394953	-	SaurJH1_2517	-	NAD-dependent epimerase/dehydratase
2474	 35.58	0	2607954..2608889	-	311	150394954	-	SaurJH1_2518	-	2-dehydropantoate 2-reductase
2475	 34.40	0	2609115..2610515	-	466	150394955	-	SaurJH1_2519	-	major facilitator transporter
2476	 35.49	0	2610809..2611504	-	231	150394956	-	SaurJH1_2520	-	binding-protein-dependent transport systems inner membrane component
2477	 35.35	0	2611504..2612445	-	313	150394957	-	SaurJH1_2521	-	substrate-binding region of ABC-type glycine betaine transport system
2478	 35.85	0	2612462..2613097	-	211	150394958	-	SaurJH1_2522	-	binding-protein-dependent transport systems inner membrane component
2479	 35.53	0	2613094..2614320	-	408	150394959	-	SaurJH1_2523	-	glycine betaine/L-proline ABC transporter, ATPase subunit
2480	 34.17	0	2614647..2614766	-	39	150394960	-	SaurJH1_2524	-	hypothetical protein
2481	 32.17	0	2614990..2615589	-	199	150394961	-	SaurJH1_2525	-	hypothetical protein
2482	 36.14	0	2615769..2617406	+	545	150394962	-	SaurJH1_2526	-	amino acid permease-associated region
2483	 34.52	0	2617715..2619067	+	450	150394963	-	SaurJH1_2527	-	carboxylesterase type B
2484	 35.27	0	2619129..2620316	-	395	150394964	-	SaurJH1_2528	-	major facilitator transporter
2485	 35.39	0	2620712..2621488	-	258	150394965	-	SaurJH1_2529	-	hypothetical protein
2486	 34.39	0	2621481..2622143	-	220	150394966	-	SaurJH1_2530	-	ABC transporter related
2487	 37.51	+1	2622391..2623467	-	358	150394967	-	SaurJH1_2531	-	cellulase
2488	 28.46	-1	2623822..2624088	-	88	150394968	-	SaurJH1_2532	-	addiction module antitoxin
2489	 28.29	-1	2624088..2624345	-	85	150394969	-	SaurJH1_2533	-	prevent-host-death family protein
2490	 28.07	-1	2624704..2625159	+	151	150394970	-	SaurJH1_2534	-	hypothetical protein
2491	 32.32	0	2625210..2625308	-	32	150394971	-	SaurJH1_2535	-	hypothetical protein
2492	 35.80	0	2625327..2626904	-	525	150394972	-	SaurJH1_2536	-	ferredoxin-dependent glutamate synthase
2493	 30.93	0	2627099..2627848	+	249	150394973	-	SaurJH1_2537	-	hypothetical protein
2494	 37.02	+1	2628210..2629403	-	397	150394974	-	SaurJH1_2538	-	major facilitator transporter
2495	 35.47	0	2629415..2630164	-	249	150394975	-	SaurJH1_2539	-	ABC transporter related
2496	 35.54	0	2630157..2630972	-	271	150394976	-	SaurJH1_2540	-	ABC transporter related
2497	 35.86	0	2630969..2631838	-	289	150394977	-	SaurJH1_2541	-	binding-protein-dependent transport systems inner membrane component
2498	 34.08	0	2631835..2632770	-	311	150394978	-	SaurJH1_2542	-	binding-protein-dependent transport systems inner membrane component
2499	 34.46	0	2632783..2634381	-	532	150394979	-	SaurJH1_2543	-	nickel ABC transporter, periplasmic nickel-binding protein
2500	 36.48	+1	2634524..2635825	-	433	150394980	-	SaurJH1_2544	-	hypothetical protein
2501	 33.82	0	2635818..2636636	-	272	150394981	-	SaurJH1_2545	-	hypothetical protein
2502	 35.40	0	2636647..2637468	-	273	150394982	-	SaurJH1_2546	-	hypothetical protein
2503	 39.39	+1	2637744..2637875	-	43	150394983	-	SaurJH1_2547	-	hypothetical protein
2504	 34.90	0	2638158..2638925	-	255	150394984	-	SaurJH1_2548	-	beta-lactamase domain-containing protein
2505	 40.29	+2	2639025..2639843	-	272	150394985	-	SaurJH1_2549	-	short chain dehydrogenase
2506	 36.00	0	2640078..2641616	+	512	150394986	-	SaurJH1_2550	-	AbgT putative transporter
2507	 28.13	-1	2641729..2642151	-	140	150394987	-	SaurJH1_2551	-	alkylhydroperoxidase
2508	 32.14	0	2642603..2643022	-	139	150394988	-	SaurJH1_2552	-	hypothetical protein
2509	 26.52	-1	2643049..2643459	-	136	150394989	-	SaurJH1_2553	-	hypothetical protein
2510	 28.84	-1	2643726..2644148	-	140	150394990	-	SaurJH1_2554	-	hypothetical protein
2511	 37.07	+1	2644398..2645093	-	231	150394991	-	SaurJH1_2555	-	short-chain dehydrogenase/reductase SDR
2512	 32.98	0	2645382..2645663	+	93	150394992	-	SaurJH1_2556	-	hypothetical protein
2513	 35.94	0	2645923..2646114	-	63	150394993	-	SaurJH1_2557	-	hypothetical protein
2514	 20.51	-2	2646182..2646337	-	51	150394994	-	SaurJH1_2558	-	hypothetical protein
2515	 31.08	0	2646675..2647472	-	265	150394995	-	SaurJH1_2559	-	putative lipoprotein
2516	 32.29	0	2648005..2648292	-	95	150394996	-	SaurJH1_2561	-	hypothetical protein
2517	 28.75	-1	2648295..2648621	-	108	150394997	-	SaurJH1_2562	-	hypothetical protein
2518	 33.41	0	2648621..2649946	-	441	150394998	-	SaurJH1_2563	-	hypothetical protein
2519	 30.58	0	2649933..2650730	-	265	150394999	-	SaurJH1_2564	-	putative lipoprotein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.