IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
197	 35.92	0	237339..237917	+	192	150392677	-	SaurJH1_0203	-	peptidase M23B
198	 34.97	0	238301..239398	+	365	150392678	-	SaurJH1_0204	-	ABC transporter related
199	 34.20	0	239411..240682	+	423	150392679	-	SaurJH1_0205	-	extracellular solute-binding protein
200	 35.70	0	240685..241953	+	422	150392680	-	SaurJH1_0206	-	binding-protein-dependent transport systems inner membrane component
201	 33.81	0	241955..242794	+	279	150392681	-	SaurJH1_0207	-	binding-protein-dependent transport systems inner membrane component
202	 39.63	+1	242865..243944	+	359	150392682	-	SaurJH1_0208	-	oxidoreductase domain-containing protein
203	 39.77	+1	243969..245009	+	346	150392683	-	SaurJH1_0209	-	oxidoreductase domain-containing protein
204	 35.60	0	245064..246032	+	322	150392684	-	SaurJH1_0210	-	xylose isomerase domain-containing protein
205	 26.46	-1	246393..246887	-	164	150392685	-	SaurJH1_0211	-	hypothetical protein
206	 36.16	0	247120..248499	+	459	150392686	uhpT	SaurJH1_0212	-	sugar phosphate antiporter
207	 32.41	0	248858..249616	-	252	150392687	-	SaurJH1_0213	-	response regulator receiver
208	 32.88	0	249609..251165	-	518	150392688	-	SaurJH1_0214	-	histidine kinase internal region
209	 34.16	0	251162..252130	-	322	150392689	-	SaurJH1_0215	-	hypothetical protein
210	 36.76	+1	252718..254967	+	749	150392690	-	SaurJH1_0216	-	formate acetyltransferase
211	 36.38	0	254990..255745	+	251	150392691	-	SaurJH1_0217	-	pyruvate formate-lyase activating enzyme
212	 31.01	0	256067..257830	+	587	150392692	-	SaurJH1_0218	-	hypothetical protein
213	 31.88	0	257994..258338	-	114	150392693	-	SaurJH1_0219	-	hypothetical protein
214	 34.65	0	258528..260504	+	658	150392694	-	SaurJH1_0220	-	staphylocoagulase precursor
215	 43.63	+2	261091..262275	-	394	150392695	-	SaurJH1_0221	-	acetyl-CoA acetyltransferase
216	 37.53	+1	262305..264566	-	753	150392696	-	SaurJH1_0222	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
217	 39.19	+1	264752..265963	-	403	150392697	-	SaurJH1_0223	-	acyl-CoA dehydrogenase domain-containing protein
218	 37.38	+1	266075..267580	-	501	150392698	-	SaurJH1_0224	-	AMP-dependent synthetase and ligase
219	 36.92	+1	267606..269168	-	520	150392699	-	SaurJH1_0225	-	coenzyme A transferase
220	 34.55	0	269537..270766	+	409	150392700	-	SaurJH1_0226	-	hypothetical protein
221	 31.07	0	271080..272492	-	470	150392701	-	SaurJH1_0227	-	extracellular solute-binding protein
222	 35.29	0	272753..273109	-	118	150392702	-	SaurJH1_0228	-	hypothetical protein
223	 25.86	-2	273266..273439	-	57	150392703	-	SaurJH1_0229	-	hypothetical protein
224	 34.90	0	273465..274610	-	381	150392704	-	SaurJH1_0230	-	globin
225	 37.21	+1	275183..276136	+	317	150392705	-	SaurJH1_0231	-	L-lactate dehydrogenase
226	 37.30	+1	276304..276429	-	41	150392706	-	SaurJH1_0232	-	hypothetical protein
227	 39.22	+1	276456..277985	-	509	150392707	-	SaurJH1_0233	-	PTS system, glucose-like IIB subunint
228	 39.53	+1	278347..279282	+	311	150392708	-	SaurJH1_0234	-	purine nucleosidase
229	 33.09	0	279620..281716	+	698	150392709	-	SaurJH1_0235	-	PRD domain-containing protein
230	 35.26	0	281701..282168	+	155	150392710	-	SaurJH1_0236	-	phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2
231	 31.18	0	282191..282469	+	92	150392711	-	SaurJH1_0237	-	phosphotransferase system lactose/cellobiose-specific IIB subunit
232	 36.98	+1	282696..283955	+	419	150392712	-	SaurJH1_0238	-	PTS system, galactitol-specific IIC subunit
233	 36.74	+1	283973..285028	+	351	150392713	-	SaurJH1_0239	-	alcohol dehydrogenase
234	 30.61	0	285030..285176	+	48	150392714	-	SaurJH1_0240	-	hypothetical protein
235	 38.12	+1	285200..286243	+	347	150392715	-	SaurJH1_0241	-	alcohol dehydrogenase
236	 32.91	0	286771..287487	+	238	150392716	-	SaurJH1_0242	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
237	 35.09	0	287480..288505	+	341	150392717	-	SaurJH1_0243	-	alcohol dehydrogenase
238	 32.86	0	288527..290221	+	564	150392718	-	SaurJH1_0244	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
239	 33.42	0	290649..291818	+	389	150392719	-	SaurJH1_0245	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
240	 32.22	0	292094..292810	+	238	150392720	ispD	SaurJH1_0246	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
241	 33.33	0	292803..293828	+	341	150392721	-	SaurJH1_0247	-	alcohol dehydrogenase
242	 31.97	0	293850..295538	+	562	150392722	-	SaurJH1_0248	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
243	 32.11	0	295571..297292	+	573	150392723	-	SaurJH1_0249	-	glycosyl transferase family protein
244	 32.30	0	297436..298110	+	224	150392724	-	SaurJH1_0250	-	cell wall biosynthesis protein ScdA
245	 35.56	0	298355..300109	+	584	150392725	-	SaurJH1_0251	-	5TM Receptors of the LytS-YhcK type transmembrane region
246	 32.39	0	300112..300852	+	246	150392726	-	SaurJH1_0252	-	response regulator receiver
247	 34.47	0	300971..301408	+	145	150392727	-	SaurJH1_0253	-	murein hydrolase regulator LrgA
248	 36.61	+1	301401..302102	+	233	150392728	-	SaurJH1_0254	-	antiholin-like protein LrgB
249	 33.05	0	302210..302914	-	234	150392729	-	SaurJH1_0255	-	UbiC transcription regulator-associated domain-containing protein
250	 35.23	0	303063..303854	+	263	150392730	-	SaurJH1_0256	-	PTS system, glucose subfamily, IIA subunit
251	 36.67	+1	303870..305306	+	478	150392731	-	SaurJH1_0257	-	glycoside hydrolase family protein
252	 34.12	0	305683..306444	-	253	150392732	-	SaurJH1_0258	-	hypothetical protein
253	 37.70	+1	306695..307609	-	304	150392733	-	SaurJH1_0259	-	ribokinase
254	 32.59	0	307637..308041	-	134	150392734	-	SaurJH1_0260	-	D-ribose pyranase
255	 37.98	+1	308056..308937	-	293	150392735	-	SaurJH1_0261	-	sugar transport family protein
256	 37.24	+1	309169..310167	-	332	150392736	-	SaurJH1_0262	-	regulatory protein LacI
257	 19.30	-2	310384..310497	+	37	150392737	-	SaurJH1_0263	-	NADH dehydrogenase subunit, putative
258	 26.72	-1	310547..310939	+	130	150392738	-	SaurJH1_0264	-	hypothetical protein
259	 37.69	+1	311067..312443	-	458	150392739	-	SaurJH1_0265	-	major facilitator transporter
260	 35.95	0	312677..313669	+	330	150392740	-	SaurJH1_0266	-	penicillin amidase
261	 39.75	+1	313995..314945	+	316	150392741	-	SaurJH1_0267	-	peptidoglycan hydrolase
262	 31.36	0	314997..315656	-	219	150392742	-	SaurJH1_0268	-	ABC transporter related
263	 31.38	0	315670..316590	-	306	150392743	-	SaurJH1_0269	-	hypothetical protein
264	 32.22	0	316587..317753	-	388	150392744	-	SaurJH1_0270	-	hypothetical protein
265	 29.00	-1	317821..319344	-	507	150392745	-	SaurJH1_0271	-	hypothetical protein
266	 37.21	+1	319675..320577	-	300	150392746	-	SaurJH1_0272	-	CHAP domain-containing protein
267	 37.76	+1	320816..321109	+	97	150392747	-	SaurJH1_0273	-	hypothetical protein
268	 30.79	0	321192..324221	+	1009	150392748	-	SaurJH1_0274	-	hypothetical protein
269	 32.46	0	324221..324679	+	152	150392749	-	SaurJH1_0275	-	hypothetical protein
270	 29.22	-1	324651..324893	+	80	150392750	-	SaurJH1_0276	-	hypothetical protein
271	 29.81	0	324906..326240	+	444	150392751	-	SaurJH1_0277	-	hypothetical protein
272	 33.90	0	326262..330701	+	1479	150392752	-	SaurJH1_0278	-	cell division protein FtsK/SpoIIIE
273	 31.04	0	330731..331123	+	130	150392753	-	SaurJH1_0279	-	hypothetical protein
274	 38.41	+1	331139..331453	+	104	150392754	-	SaurJH1_0280	-	hypothetical protein
275	 29.06	-1	331450..332127	+	225	150392755	-	SaurJH1_0281	-	hypothetical protein
276	 37.11	+1	332127..332444	+	105	150392756	-	SaurJH1_0282	-	hypothetical protein
277	 34.96	0	332454..334298	+	614	150392757	-	SaurJH1_0283	-	hypothetical protein
278	 31.30	0	334309..334800	+	163	150392758	-	SaurJH1_0284	-	hypothetical protein
279	 27.34	-1	335003..335686	+	227	150392759	-	SaurJH1_0285	-	hypothetical protein
280	 28.10	-1	335832..336443	+	203	150392760	-	SaurJH1_0286	-	hypothetical protein
281	 26.94	-1	336578..336796	+	72	150392761	-	SaurJH1_0287	-	hypothetical protein
282	 29.54	-1	336928..337428	+	166	150392762	-	SaurJH1_0288	-	hypothetical protein
283	 29.74	0	337439..337939	+	166	150392763	-	SaurJH1_0289	-	hypothetical protein
284	 29.44	-1	337950..338411	+	153	150392764	-	SaurJH1_0290	-	hypothetical protein
285	 29.94	0	338460..338960	+	166	150392765	-	SaurJH1_0291	-	hypothetical protein
286	 30.45	0	338971..339456	+	161	150392766	-	SaurJH1_0292	-	hypothetical protein
287	 26.72	-1	340078..340455	+	125	150392767	-	SaurJH1_0293	-	hypothetical protein
288	 31.58	0	340605..341003	+	132	150392768	-	SaurJH1_0294	-	hypothetical protein
289	 33.33	0	341219..342064	-	281	150392769	-	SaurJH1_0295	-	formate/nitrite transporter
290	 35.17	0	342280..343587	-	435	150392770	-	SaurJH1_0296	-	branched-chain amino acid transport system II carrier protein
291	 33.11	0	344171..345061	+	296	150392771	-	SaurJH1_0297	-	5'-nucleotidase
292	 33.14	0	345310..346359	+	349	150392772	-	SaurJH1_0298	-	hypothetical protein
293	 33.48	0	346372..347049	+	225	150392773	-	SaurJH1_0299	-	ABC transporter related
294	 38.28	+1	347257..348288	+	343	150392774	-	SaurJH1_0300	-	regulatory protein PfoR
295	 34.23	0	348631..349749	+	372	150392775	-	SaurJH1_0301	-	ribokinase-like domain-containing protein
296	 38.20	+1	349724..350647	+	307	150392776	-	SaurJH1_0302	-	hypothetical protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.