IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2377	 32.79	0	2505737..2506657	-	306	150394857	-	SaurJH1_2420	-	alpha/beta hydrolase domain-containing protein
2378	 30.83	0	2506865..2507503	+	212	150394858	-	SaurJH1_2421	-	hypothetical protein
2379	 32.76	0	2507749..2509680	-	643	150394859	-	SaurJH1_2422	-	EmrB/QacA family drug resistance transporter
2380	 33.18	0	2509693..2510340	-	215	150394860	-	SaurJH1_2423	-	hypothetical protein
2381	 29.19	-1	2510461..2511015	+	184	150394861	-	SaurJH1_2424	-	regulatory protein TetR
2382	 33.50	0	2511242..2512450	-	402	150394862	-	SaurJH1_2425	-	Bcr/CflA subfamily drug resistance transporter
2383	 31.67	0	2512719..2514101	-	460	150394863	-	SaurJH1_2426	-	TcaA protein
2384	 28.73	-1	2514338..2514793	-	151	150394864	-	SaurJH1_2427	-	regulatory protein MarR
2385	 30.96	0	2514988..2515956	+	322	150394865	-	SaurJH1_2428	-	hypothetical protein
2386	 35.44	0	2516187..2516852	-	221	150394866	-	SaurJH1_2429	-	ABC transporter related
2387	 30.40	0	2516852..2517907	-	351	150394867	-	SaurJH1_2430	-	hypothetical protein
2388	 35.26	0	2518043..2518717	+	224	150394868	-	SaurJH1_2431	-	response regulator receiver
2389	 31.30	0	2518710..2520083	+	457	150394869	-	SaurJH1_2432	-	ATPase domain-containing protein
2390	 28.38	-1	2520246..2520689	+	147	150394870	-	SaurJH1_2433	-	hypothetical protein
2391	 30.92	0	2520686..2521141	+	151	150394871	-	SaurJH1_2434	-	hypothetical protein
2392	 36.11	0	2521207..2522685	-	492	150394872	-	SaurJH1_2435	-	malate:quinone oxidoreductase
2393	 32.21	0	2523066..2524664	-	532	150394873	-	SaurJH1_2436	-	L-lactate transport
2394	 32.74	0	2524966..2526654	+	562	150394874	-	SaurJH1_2437	-	hypothetical protein
2395	 30.08	0	2526808..2527422	-	204	150394875	-	SaurJH1_2438	-	hypothetical protein
2396	 31.78	0	2527736..2528251	-	171	150394876	-	SaurJH1_2439	-	GCN5-related N-acetyltransferase
2397	 36.58	+1	2528400..2529446	+	348	150394877	-	SaurJH1_2440	-	quinone oxidoreductase putative YhdH/YhfP
2398	 37.31	+1	2529492..2529893	-	133	150394878	-	SaurJH1_2441	-	GCN5-related N-acetyltransferase
2399	 35.07	0	2529929..2530963	-	344	150394879	-	SaurJH1_2442	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2400	 21.37	-2	2530974..2531090	-	38	150394880	-	SaurJH1_2443	-	hypothetical protein
2401	 30.79	0	2531195..2531626	-	143	150394881	-	SaurJH1_2444	-	hypothetical protein
2402	 32.26	0	2531678..2531770	+	30	150394882	-	SaurJH1_2445	-	hypothetical protein
2403	 32.00	0	2531833..2533110	-	425	150394883	-	SaurJH1_2446	-	hypothetical protein
2404	 30.93	0	2533271..2533894	+	207	150394884	-	SaurJH1_2447	-	regulatory protein TetR
2405	 29.95	0	2533940..2534884	+	314	150394885	-	SaurJH1_2448	-	Mg2 transporter protein CorA family protein
2406	 35.27	0	2534969..2536411	-	480	150394886	-	SaurJH1_2449	-	PTS system, sucrose-specific IIBC subunit
2407	 30.99	0	2536594..2536977	+	127	150394887	-	SaurJH1_2450	-	hypothetical protein
2408	 22.99	-2	2538252..2538425	+	57	150394888	-	SaurJH1_2451	-	hypothetical protein
2409	 28.58	-1	2538465..2540570	+	701	150394889	-	SaurJH1_2452	-	helix-turn-helix domain-containing protein
2410	 31.91	0	2540641..2541063	+	140	150394890	-	SaurJH1_2453	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
2411	 27.73	-1	2541327..2541683	+	118	150394891	-	SaurJH1_2454	-	hypothetical protein
2412	 33.10	0	2542001..2543278	-	425	150394892	-	SaurJH1_2455	-	sodium:dicarboxylate symporter
2413	 27.60	-1	2543460..2543825	-	121	150394893	-	SaurJH1_2456	-	hypothetical protein
2414	 28.86	-1	2544222..2544668	+	148	150394894	-	SaurJH1_2457	-	regulatory protein MarR
2415	 29.68	0	2544875..2545312	+	145	150394895	-	SaurJH1_2458	-	heat shock protein Hsp20
2416	 34.44	0	2545419..2546588	-	389	150394896	-	SaurJH1_2459	-	major facilitator transporter
2417	 20.83	-2	2546659..2546778	+	39	150394897	-	SaurJH1_2460	-	hypothetical protein
2418	 31.37	0	2546957..2547871	+	304	150394898	-	SaurJH1_2461	-	hypothetical protein
2419	 27.94	-1	2547850..2548590	+	246	150394899	-	SaurJH1_2462	-	TipAS antibiotic-recognition domain-containing protein
2420	 33.94	0	2548848..2549501	-	217	150394900	-	SaurJH1_2463	-	response regulator receiver
2421	 33.62	0	2549524..2550558	-	344	150394901	-	SaurJH1_2464	-	ATPase domain-containing protein
2422	 33.11	0	2550582..2551034	-	150	150394902	-	SaurJH1_2465	-	hypothetical protein
2423	 32.45	0	2551054..2551731	-	225	150394903	-	SaurJH1_2466	-	respiratory nitrate reductase, gamma subunit
2424	 30.03	0	2551724..2552299	-	191	150394904	-	SaurJH1_2467	-	nitrate reductase molybdenum cofactor assembly chaperone
2425	 37.88	+1	2552292..2553851	-	519	150394905	-	SaurJH1_2468	-	nitrate reductase, beta subunit
2426	 37.83	+1	2557789..2558766	-	325	150394906	-	SaurJH1_2470	-	uroporphyrin-III C-methyltransferase
2427	 35.24	0	2558757..2559071	-	104	150394907	-	SaurJH1_2471	-	nitrite reductase (NAD(P)H), small subunit
2428	 36.41	+1	2559075..2561480	-	801	150394908	-	SaurJH1_2472	-	nitrite reductase (NAD(P)H), large subunit
2429	 35.52	0	2561546..2562277	-	243	150394909	-	SaurJH1_2473	-	cobalamin (vitamin B12) biosynthesis CbiX protein
2430	 36.69	+1	2562507..2563043	-	178	150394910	-	SaurJH1_2474	-	GCN5-related N-acetyltransferase
2431	 33.82	0	2563277..2564101	-	274	150394911	-	SaurJH1_2475	-	formate/nitrite transporter
2432	 24.04	-2	2564318..2564500	-	60	150394912	-	SaurJH1_2476	-	hypothetical protein
2433	 33.97	0	2564584..2565051	-	155	150394913	-	SaurJH1_2477	-	activator of Hsp90 ATPase 1 family protein
2434	 31.91	0	2565237..2566784	-	515	150394914	-	SaurJH1_2478	-	ribulose-phosphate 3-epimerase
2435	 30.73	0	2567079..2567270	-	63	150394915	-	SaurJH1_2479	-	addiction module antitoxin
2436	 30.11	0	2567254..2567346	-	30	150394916	-	SaurJH1_2480	-	hypothetical protein
2437	 31.75	0	2567346..2567597	-	83	150394917	-	SaurJH1_2481	-	prevent-host-death family protein
2438	 29.67	0	2567870..2568469	-	199	150394918	-	SaurJH1_2482	-	putative lipoprotein
2439	 30.30	0	2568488..2568850	-	120	150394919	-	SaurJH1_2483	-	putative lipoprotein
2440	 33.33	0	2569105..2570355	+	416	150394920	-	SaurJH1_2484	-	methicillin resistance protein
2441	 34.56	0	2570452..2571183	-	243	150394921	-	SaurJH1_2485	-	ABC transporter related
2442	 33.61	0	2571180..2571899	-	239	150394922	-	SaurJH1_2486	-	polar amino acid ABC transporter, inner membrane subunit
2443	 31.54	0	2571880..2572659	-	259	150394923	-	SaurJH1_2487	-	extracellular solute-binding protein
2444	 34.10	0	2572780..2574219	-	479	150394924	-	SaurJH1_2488	-	EmrB/QacA family drug resistance transporter
2445	 30.48	0	2574393..2574497	+	34	150394925	-	SaurJH1_2489	-	hypothetical protein
2446	 33.48	0	2574651..2575337	-	228	150394926	-	SaurJH1_2490	-	phosphoglycerate mutase 1 family protein
2447	 33.45	0	2575664..2576530	-	288	150394927	-	SaurJH1_2491	-	cation diffusion facilitator family transporter
2448	 32.49	0	2577350..2578660	+	436	150394928	-	SaurJH1_2492	-	Ig-binding B domain-containing protein
2449	 32.09	0	2579205..2580170	+	321	150394929	-	SaurJH1_2493	-	beta-channel forming cytolysin
2450	 33.23	0	2580737..2581684	+	315	150394930	-	SaurJH1_2494	-	beta-channel forming cytolysin
2451	 32.00	0	2581686..2582663	+	325	150394931	-	SaurJH1_2495	-	beta-channel forming cytolysin
2452	 29.70	0	2582715..2583182	-	155	150394932	-	SaurJH1_2496	-	hypothetical protein
2453	 33.04	0	2583193..2583885	-	230	150394933	-	SaurJH1_2497	-	6-carboxyhexanoate--CoA ligase
2454	 30.47	0	2583896..2585011	-	371	150394934	-	SaurJH1_2498	-	8-amino-7-oxononanoate synthase
2455	 33.43	0	2584989..2585996	-	335	150394935	-	SaurJH1_2499	-	biotin synthase
2456	 33.63	0	2585998..2587356	-	452	150394936	-	SaurJH1_2500	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
2457	 31.88	0	2587334..2588020	-	228	150394937	-	SaurJH1_2501	-	dethiobiotin synthase
2458	 29.82	0	2588473..2590206	-	577	150394938	-	SaurJH1_2502	-	ABC transporter related
2459	 31.41	0	2590231..2591994	-	587	150394939	-	SaurJH1_2503	-	ABC transporter related
2460	 27.93	-1	2592560..2592670	-	36	150394940	-	SaurJH1_2504	-	hypothetical protein
2461	 33.73	0	2592701..2592955	+	84	150394941	-	SaurJH1_2505	-	hypothetical protein
2462	 29.20	-1	2592938..2593324	-	128	150394942	-	SaurJH1_2506	-	hypothetical protein
2463	 38.50	+1	2593592..2594734	+	380	150394943	-	SaurJH1_2507	-	glycerate kinase
2464	 31.52	0	2594794..2595453	+	219	150394944	-	SaurJH1_2508	-	hypothetical protein
2465	 35.07	0	2595635..2596846	+	403	150394945	-	SaurJH1_2509	-	Bcr/CflA subfamily drug resistance transporter
2466	 36.29	0	2596969..2597442	-	157	150394946	-	SaurJH1_2510	-	hypothetical protein
2467	 35.62	0	2597555..2598211	+	218	150394947	-	SaurJH1_2511	-	hypothetical protein
2468	 34.18	0	2598274..2599101	-	275	150394948	-	SaurJH1_2512	-	hypothetical protein
2469	 35.11	0	2599366..2600775	+	469	150394949	-	SaurJH1_2513	-	amino acid permease-associated region
2470	 32.37	0	2600913..2602991	+	692	150394950	-	SaurJH1_2514	-	sodium/hydrogen exchanger
2471	 34.04	0	2603132..2604961	-	609	150394951	-	SaurJH1_2515	-	hypothetical protein
2472	 31.60	0	2605193..2606689	+	498	150394952	-	SaurJH1_2516	-	beta-lactamase
2473	 35.68	0	2606781..2607632	-	283	150394953	-	SaurJH1_2517	-	NAD-dependent epimerase/dehydratase
2474	 35.58	0	2607954..2608889	-	311	150394954	-	SaurJH1_2518	-	2-dehydropantoate 2-reductase
2475	 34.40	0	2609115..2610515	-	466	150394955	-	SaurJH1_2519	-	major facilitator transporter
2476	 35.49	0	2610809..2611504	-	231	150394956	-	SaurJH1_2520	-	binding-protein-dependent transport systems inner membrane component
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.