IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2334	 35.53	0	2465618..2466574	-	318	150394814	-	SaurJH1_2377	-	transcription attenuator LytR
2335	 32.21	0	2466698..2467495	-	265	150394815	-	SaurJH1_2378	-	inositol-phosphate phosphatase
2336	 31.02	0	2467880..2468572	+	230	150394816	-	SaurJH1_2379	-	helix-turn-helix type 11 domain-containing protein
2337	 30.35	0	2468597..2469334	-	245	150394817	-	SaurJH1_2380	-	hypothetical protein
2338	 25.45	-2	2469383..2469712	+	109	150394818	-	SaurJH1_2381	-	hypothetical protein
2339	 29.32	-1	2470157..2471029	+	290	150394819	-	SaurJH1_2382	-	helix-turn-helix protein RpiR
2340	 34.20	0	2471416..2472795	-	459	150394820	-	SaurJH1_2383	-	amino acid permease-associated region
2341	 33.61	0	2473075..2473431	+	118	150394821	-	SaurJH1_2384	-	hypothetical protein
2342	 29.03	-1	2473428..2473613	+	61	150394822	-	SaurJH1_2385	-	hypothetical protein
2343	 32.29	0	2473709..2473900	-	63	150394823	-	SaurJH1_2386	-	hypothetical protein
2344	 33.49	0	2473911..2474546	-	211	150394824	-	SaurJH1_2387	-	HAD family hydrolase
2345	 34.31	0	2474621..2475538	-	305	150394825	-	SaurJH1_2388	-	bile acid:sodium symporter
2346	 29.76	0	2475806..2476336	+	176	150394826	-	SaurJH1_2389	-	hypothetical protein
2347	 35.83	0	2476402..2478006	-	534	150394827	-	SaurJH1_2390	-	PTS system, alpha-glucoside-specific IIBC subunit
2348	 30.91	0	2478139..2479458	-	439	150394828	-	SaurJH1_2391	-	transposase IS204/IS1001/IS1096/IS1165 family protein
2349	 29.93	0	2479856..2480620	+	254	150394829	-	SaurJH1_2392	-	sugar isomerase (SIS)
2350	 33.53	0	2480678..2481184	-	168	150394830	-	SaurJH1_2393	-	hypothetical protein
2351	 35.07	0	2481351..2482730	-	459	150394831	-	SaurJH1_2394	-	Na+ antiporter NhaC
2352	 27.89	-1	2482889..2483458	-	189	150394832	-	SaurJH1_2395	-	hypothetical protein
2353	 39.23	+1	2483945..2484826	-	293	150394833	-	SaurJH1_2396	-	short-chain dehydrogenase/reductase SDR
2354	 37.43	+1	2484937..2486058	-	373	150394834	-	SaurJH1_2397	-	amidohydrolase
2355	 36.08	0	2486334..2487572	-	412	150394835	-	SaurJH1_2398	-	imidazolonepropionase
2356	 39.47	+1	2487572..2489233	-	553	150394836	-	SaurJH1_2399	-	urocanate hydratase
2357	 31.64	0	2489393..2490277	+	294	150394837	-	SaurJH1_2400	-	LysR substrate-binding
2358	 28.81	-1	2490459..2490878	+	139	150394838	-	SaurJH1_2401	-	fosfomycin resistance protein FosB
2359	 36.00	0	2491134..2492069	-	311	150394839	-	SaurJH1_2402	-	formimidoylglutamase
2360	 33.41	0	2492359..2493618	+	419	150394840	-	SaurJH1_2403	-	hypothetical protein
2361	 33.48	0	2493684..2494370	-	228	150394841	-	SaurJH1_2404	-	ribose 5-phosphate isomerase
2362	 33.94	0	2494544..2495197	+	217	150394842	-	SaurJH1_2405	-	MOSC domain-containing protein
2363	 25.93	-2	2495221..2495409	+	62	150394843	-	SaurJH1_2406	-	hypothetical protein
2364	 31.37	0	2495433..2496452	-	339	150394844	-	SaurJH1_2407	-	aldose 1-epimerase
2365	 38.53	+1	2496482..2496808	-	108	150394845	-	SaurJH1_2408	-	hypothetical protein
2366	 24.19	-2	2496857..2497042	-	61	150394846	-	SaurJH1_2409	-	hypothetical protein
2367	 31.31	0	2497026..2498258	-	410	150394847	-	SaurJH1_2410	-	hypothetical protein
2368	 34.44	0	2498251..2499150	-	299	150394848	-	SaurJH1_2411	-	ABC transporter related
2369	 31.08	0	2499382..2500002	-	206	150394849	-	SaurJH1_2412	-	hypothetical protein
2370	 27.08	-1	2500170..2500313	+	47	150394850	-	SaurJH1_2413	-	hypothetical protein
2371	 37.93	+1	2500401..2501009	+	202	150394851	-	SaurJH1_2414	-	DNA-3-methyladenine glycosylase
2372	 33.09	0	2501342..2502550	+	402	150394852	-	SaurJH1_2415	-	sodium/glutamate symporter
2373	 37.81	+1	2502598..2503647	-	349	150394853	-	SaurJH1_2416	-	isopentenyl pyrophosphate isomerase
2374	 29.43	-1	2503678..2504625	-	315	150394854	-	SaurJH1_2417	-	Mg2 transporter protein CorA family protein
2375	 32.16	0	2504704..2505213	+	169	150394855	-	SaurJH1_2418	-	hypothetical protein
2376	 31.19	0	2505210..2505629	+	139	150394856	-	SaurJH1_2419	-	hypothetical protein
2377	 32.79	0	2505737..2506657	-	306	150394857	-	SaurJH1_2420	-	alpha/beta hydrolase domain-containing protein
2378	 30.83	0	2506865..2507503	+	212	150394858	-	SaurJH1_2421	-	hypothetical protein
2379	 32.76	0	2507749..2509680	-	643	150394859	-	SaurJH1_2422	-	EmrB/QacA family drug resistance transporter
2380	 33.18	0	2509693..2510340	-	215	150394860	-	SaurJH1_2423	-	hypothetical protein
2381	 29.19	-1	2510461..2511015	+	184	150394861	-	SaurJH1_2424	-	regulatory protein TetR
2382	 33.50	0	2511242..2512450	-	402	150394862	-	SaurJH1_2425	-	Bcr/CflA subfamily drug resistance transporter
2383	 31.67	0	2512719..2514101	-	460	150394863	-	SaurJH1_2426	-	TcaA protein
2384	 28.73	-1	2514338..2514793	-	151	150394864	-	SaurJH1_2427	-	regulatory protein MarR
2385	 30.96	0	2514988..2515956	+	322	150394865	-	SaurJH1_2428	-	hypothetical protein
2386	 35.44	0	2516187..2516852	-	221	150394866	-	SaurJH1_2429	-	ABC transporter related
2387	 30.40	0	2516852..2517907	-	351	150394867	-	SaurJH1_2430	-	hypothetical protein
2388	 35.26	0	2518043..2518717	+	224	150394868	-	SaurJH1_2431	-	response regulator receiver
2389	 31.30	0	2518710..2520083	+	457	150394869	-	SaurJH1_2432	-	ATPase domain-containing protein
2390	 28.38	-1	2520246..2520689	+	147	150394870	-	SaurJH1_2433	-	hypothetical protein
2391	 30.92	0	2520686..2521141	+	151	150394871	-	SaurJH1_2434	-	hypothetical protein
2392	 36.11	0	2521207..2522685	-	492	150394872	-	SaurJH1_2435	-	malate:quinone oxidoreductase
2393	 32.21	0	2523066..2524664	-	532	150394873	-	SaurJH1_2436	-	L-lactate transport
2394	 32.74	0	2524966..2526654	+	562	150394874	-	SaurJH1_2437	-	hypothetical protein
2395	 30.08	0	2526808..2527422	-	204	150394875	-	SaurJH1_2438	-	hypothetical protein
2396	 31.78	0	2527736..2528251	-	171	150394876	-	SaurJH1_2439	-	GCN5-related N-acetyltransferase
2397	 36.58	+1	2528400..2529446	+	348	150394877	-	SaurJH1_2440	-	quinone oxidoreductase putative YhdH/YhfP
2398	 37.31	+1	2529492..2529893	-	133	150394878	-	SaurJH1_2441	-	GCN5-related N-acetyltransferase
2399	 35.07	0	2529929..2530963	-	344	150394879	-	SaurJH1_2442	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2400	 21.37	-2	2530974..2531090	-	38	150394880	-	SaurJH1_2443	-	hypothetical protein
2401	 30.79	0	2531195..2531626	-	143	150394881	-	SaurJH1_2444	-	hypothetical protein
2402	 32.26	0	2531678..2531770	+	30	150394882	-	SaurJH1_2445	-	hypothetical protein
2403	 32.00	0	2531833..2533110	-	425	150394883	-	SaurJH1_2446	-	hypothetical protein
2404	 30.93	0	2533271..2533894	+	207	150394884	-	SaurJH1_2447	-	regulatory protein TetR
2405	 29.95	0	2533940..2534884	+	314	150394885	-	SaurJH1_2448	-	Mg2 transporter protein CorA family protein
2406	 35.27	0	2534969..2536411	-	480	150394886	-	SaurJH1_2449	-	PTS system, sucrose-specific IIBC subunit
2407	 30.99	0	2536594..2536977	+	127	150394887	-	SaurJH1_2450	-	hypothetical protein
2408	 22.99	-2	2538252..2538425	+	57	150394888	-	SaurJH1_2451	-	hypothetical protein
2409	 28.58	-1	2538465..2540570	+	701	150394889	-	SaurJH1_2452	-	helix-turn-helix domain-containing protein
2410	 31.91	0	2540641..2541063	+	140	150394890	-	SaurJH1_2453	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
2411	 27.73	-1	2541327..2541683	+	118	150394891	-	SaurJH1_2454	-	hypothetical protein
2412	 33.10	0	2542001..2543278	-	425	150394892	-	SaurJH1_2455	-	sodium:dicarboxylate symporter
2413	 27.60	-1	2543460..2543825	-	121	150394893	-	SaurJH1_2456	-	hypothetical protein
2414	 28.86	-1	2544222..2544668	+	148	150394894	-	SaurJH1_2457	-	regulatory protein MarR
2415	 29.68	0	2544875..2545312	+	145	150394895	-	SaurJH1_2458	-	heat shock protein Hsp20
2416	 34.44	0	2545419..2546588	-	389	150394896	-	SaurJH1_2459	-	major facilitator transporter
2417	 20.83	-2	2546659..2546778	+	39	150394897	-	SaurJH1_2460	-	hypothetical protein
2418	 31.37	0	2546957..2547871	+	304	150394898	-	SaurJH1_2461	-	hypothetical protein
2419	 27.94	-1	2547850..2548590	+	246	150394899	-	SaurJH1_2462	-	TipAS antibiotic-recognition domain-containing protein
2420	 33.94	0	2548848..2549501	-	217	150394900	-	SaurJH1_2463	-	response regulator receiver
2421	 33.62	0	2549524..2550558	-	344	150394901	-	SaurJH1_2464	-	ATPase domain-containing protein
2422	 33.11	0	2550582..2551034	-	150	150394902	-	SaurJH1_2465	-	hypothetical protein
2423	 32.45	0	2551054..2551731	-	225	150394903	-	SaurJH1_2466	-	respiratory nitrate reductase, gamma subunit
2424	 30.03	0	2551724..2552299	-	191	150394904	-	SaurJH1_2467	-	nitrate reductase molybdenum cofactor assembly chaperone
2425	 37.88	+1	2552292..2553851	-	519	150394905	-	SaurJH1_2468	-	nitrate reductase, beta subunit
2426	 37.83	+1	2557789..2558766	-	325	150394906	-	SaurJH1_2470	-	uroporphyrin-III C-methyltransferase
2427	 35.24	0	2558757..2559071	-	104	150394907	-	SaurJH1_2471	-	nitrite reductase (NAD(P)H), small subunit
2428	 36.41	+1	2559075..2561480	-	801	150394908	-	SaurJH1_2472	-	nitrite reductase (NAD(P)H), large subunit
2429	 35.52	0	2561546..2562277	-	243	150394909	-	SaurJH1_2473	-	cobalamin (vitamin B12) biosynthesis CbiX protein
2430	 36.69	+1	2562507..2563043	-	178	150394910	-	SaurJH1_2474	-	GCN5-related N-acetyltransferase
2431	 33.82	0	2563277..2564101	-	274	150394911	-	SaurJH1_2475	-	formate/nitrite transporter
2432	 24.04	-2	2564318..2564500	-	60	150394912	-	SaurJH1_2476	-	hypothetical protein
2433	 33.97	0	2564584..2565051	-	155	150394913	-	SaurJH1_2477	-	activator of Hsp90 ATPase 1 family protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.