IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2203	 35.81	0	2344027..2345397	-	456	150394683	-	SaurJH1_2243	-	nucleoside recognition domain-containing protein
2204	 33.44	0	2345633..2346601	-	322	150394684	-	SaurJH1_2244	-	transport system permease protein
2205	 34.30	0	2346598..2347629	-	343	150394685	-	SaurJH1_2245	-	transport system permease protein
2206	 30.89	0	2347641..2348624	-	327	150394686	-	SaurJH1_2246	-	periplasmic binding protein
2207	 32.54	0	2348790..2348915	+	41	150394687	-	SaurJH1_2247	-	hypothetical protein
2208	 30.81	0	2349016..2350086	-	356	150394688	-	SaurJH1_2248	-	alanine racemase domain-containing protein
2209	 32.48	0	2350093..2351850	-	585	150394689	-	SaurJH1_2249	-	hypothetical protein
2210	 32.24	0	2351837..2353030	-	397	150394690	-	SaurJH1_2250	-	major facilitator transporter
2211	 32.42	0	2353138..2355108	+	656	150394691	-	SaurJH1_2251	-	hypothetical protein
2212	 31.57	0	2355269..2355778	-	169	150394692	-	SaurJH1_2252	-	alkaline shock protein 23
2213	 30.42	0	2355841..2356080	-	79	150394693	-	SaurJH1_2253	-	hypothetical protein
2214	 32.77	0	2356093..2356629	-	178	150394694	-	SaurJH1_2254	-	hypothetical protein
2215	 35.51	0	2356804..2358366	-	520	150394695	-	SaurJH1_2255	-	choline/carnitine/betaine transporter
2216	 33.73	0	2358674..2359681	-	335	150394696	-	SaurJH1_2256	-	zinc-binding alcohol dehydrogenase
2217	 38.02	+1	2359916..2360917	-	333	150394697	-	SaurJH1_2257	-	alcohol dehydrogenase
2218	 33.79	0	2361195..2362064	-	289	150394698	-	SaurJH1_2258	-	hypothetical protein
2219	 34.75	0	2362330..2363742	-	470	150394699	-	SaurJH1_2259	-	6-phospho-beta-galactosidase
2220	 35.79	0	2363760..2365472	-	570	150394700	-	SaurJH1_2260	-	PTS system, lactose-specific IIC subunit
2221	 36.22	0	2365478..2365789	-	103	150394701	-	SaurJH1_2261	-	PTS system, lactose-specific IIA component
2222	 35.37	0	2365811..2366791	-	326	150394702	-	SaurJH1_2262	-	tagatose 1,6-diphosphate aldolase
2223	 35.16	0	2366795..2367727	-	310	150394703	-	SaurJH1_2263	-	tagatose-6-phosphate kinase
2224	 34.30	0	2367740..2368255	-	171	150394704	-	SaurJH1_2264	-	galactose-6-phosphate isomerase subunit LacB
2225	 36.60	+1	2368271..2368699	-	142	150394705	-	SaurJH1_2265	-	galactose-6-phosphate isomerase subunit LacA
2226	 34.22	0	2369066..2369857	-	263	150394706	-	SaurJH1_2266	-	lactose phosphotransferase system repressor
2227	 35.93	0	2370072..2370803	+	243	150394707	-	SaurJH1_2267	-	NAD-dependent deacetylase
2228	 25.98	-2	2371088..2371291	-	67	150394708	-	SaurJH1_2268	-	hypothetical protein
2229	 33.33	0	2371524..2372372	-	282	150394709	-	SaurJH1_2269	-	aldo/keto reductase
2230	 29.26	-1	2372442..2372858	-	138	150394710	-	SaurJH1_2270	-	regulatory protein MerR
2231	 33.17	0	2373266..2375695	+	809	150394711	-	SaurJH1_2271	-	polysaccharide lyase family protein 8
2232	 31.46	0	2375755..2376609	-	284	150394712	-	SaurJH1_2272	-	peptidase M23B
2233	 29.90	0	2376820..2377635	-	271	150394713	-	SaurJH1_2273	-	HAD family hydrolase
2234	 31.46	0	2377930..2378355	+	141	150394714	-	SaurJH1_2274	-	MAP domain-containing protein
2235	 33.19	0	2378739..2379443	-	234	150394715	-	SaurJH1_2275	-	acetolactate decarboxylase
2236	 34.77	0	2379480..2381144	-	554	150394716	-	SaurJH1_2276	-	acetolactate synthase
2237	 27.34	-1	2382394..2383410	-	338	150394717	-	SaurJH1_2277	-	RNA-directed DNA polymerase (Reverse transcriptase)
2238	 23.02	-2	2383655..2384284	-	209	150394718	-	SaurJH1_2278	-	hypothetical protein
2239	 21.76	-2	2384284..2384931	-	215	150394719	-	SaurJH1_2279	-	hypothetical protein
2240	 27.42	-1	2387910..2388095	+	61	150394720	-	SaurJH1_2283	-	hypothetical protein
2241	 25.74	-2	2388377..2389324	+	315	150394721	-	SaurJH1_2284	-	hypothetical protein
2242	 40.71	+2	2389500..2389892	-	130	150394722	rpsI	SaurJH1_2285	-	30S ribosomal protein S9
2243	 36.30	0	2389912..2390349	-	145	150394723	rplM	SaurJH1_2286	-	50S ribosomal protein L13
2244	 35.45	0	2390589..2391392	-	267	150394724	truA	SaurJH1_2287	-	tRNA pseudouridine synthase A
2245	 31.72	0	2391397..2392203	-	268	150394725	-	SaurJH1_2288	-	cobalt transport protein
2246	 34.26	0	2392193..2393053	-	286	150394726	-	SaurJH1_2289	-	cobalt transporter ATP-binding subunit
2247	 34.81	0	2393050..2393859	-	269	150394727	-	SaurJH1_2290	-	cobalt transporter ATP-binding subunit
2248	 37.40	+1	2394397..2394765	-	122	150394728	rplQ	SaurJH1_2291	-	50S ribosomal protein L17
2249	 33.76	0	2394782..2395726	-	314	150394729	-	SaurJH1_2292	-	DNA-directed RNA polymerase subunit alpha
2250	 40.00	+2	2395801..2396190	-	129	150394730	-	SaurJH1_2293	-	30S ribosomal protein S11
2251	 39.07	+1	2396214..2396579	-	121	150394731	rpsM	SaurJH1_2294	-	30S ribosomal protein S13
2252	 28.95	-1	2396602..2396715	-	37	150394732	rpmJ	SaurJH1_2295	-	50S ribosomal protein L36
2253	 33.33	0	2396747..2396965	-	72	150394733	-	SaurJH1_2296	-	translation initiation factor IF-1
2254	 35.65	0	2397158..2397805	-	215	150394734	-	SaurJH1_2297	-	adenylate kinase
2255	 34.57	0	2397822..2399114	-	430	150394735	secY	SaurJH1_2298	-	preprotein translocase subunit SecY
2256	 38.55	+1	2399114..2399554	-	146	150394736	rplO	SaurJH1_2299	-	50S ribosomal protein L15
2257	 35.56	0	2399571..2399750	-	59	150394737	rpmD	SaurJH1_2300	-	50S ribosomal protein L30
2258	 40.72	+2	2399767..2400267	-	166	150394738	rpsE	SaurJH1_2301	-	30S ribosomal protein S5
2259	 35.56	0	2400288..2400647	-	119	150394739	rplR	SaurJH1_2302	-	50S ribosomal protein L18
2260	 35.20	0	2400678..2401214	-	178	150394740	rplF	SaurJH1_2303	-	50S ribosomal protein L6
2261	 34.09	0	2401239..2401637	-	132	150394741	rpsH	SaurJH1_2304	-	30S ribosomal protein S8
2262	 38.71	+1	2401669..2401854	-	61	150394742	rpsN	SaurJH1_2305	-	30S ribosomal protein S14
2263	 34.26	0	2401877..2402416	-	179	150394743	rplE	SaurJH1_2306	-	50S ribosomal protein L5
2264	 33.65	0	2402443..2402760	-	105	150394744	rplX	SaurJH1_2307	-	50S ribosomal protein L24
2265	 40.92	+2	2402796..2403164	-	122	150394745	rplN	SaurJH1_2308	-	50S ribosomal protein L14
2266	 30.30	0	2403196..2403459	-	87	150394746	rpsQ	SaurJH1_2309	-	30S ribosomal protein S17
2267	 34.29	0	2403483..2403692	-	69	150394747	-	SaurJH1_2310	-	50S ribosomal protein L29
2268	 40.46	+2	2403682..2404116	-	144	150394748	rplP	SaurJH1_2311	-	50S ribosomal protein L16
2269	 38.23	+1	2404119..2404772	-	217	150394749	rpsC	SaurJH1_2312	-	30S ribosomal protein S3
2270	 37.29	+1	2404796..2405149	-	117	150394750	rplV	SaurJH1_2313	-	50S ribosomal protein L22
2271	 37.63	+1	2405178..2405456	-	92	150394751	rpsS	SaurJH1_2314	-	30S ribosomal protein S19
2272	 40.41	+2	2405523..2406356	-	277	150394752	rplB	SaurJH1_2315	-	50S ribosomal protein L2
2273	 35.14	0	2406389..2406664	-	91	150394753	rplW	SaurJH1_2316	-	50S ribosomal protein L23
2274	 38.94	+1	2406664..2407287	-	207	150394754	rplD	SaurJH1_2317	-	50S ribosomal protein L4
2275	 38.01	+1	2407314..2407976	-	220	150394755	rplC	SaurJH1_2318	-	50S ribosomal protein L3
2276	 37.54	+1	2408004..2408312	-	102	150394756	rpsJ	SaurJH1_2319	-	30S ribosomal protein S10
2277	 29.49	-1	2408669..2409058	+	129	150394757	-	SaurJH1_2320	-	hypothetical protein
2278	 35.43	0	2409249..2410583	-	444	150394758	-	SaurJH1_2321	-	xanthine/uracil/vitamin C permease
2279	 33.15	0	2410696..2412831	-	711	150394759	-	SaurJH1_2322	-	DNA topoisomerase III
2280	 31.76	0	2413006..2413893	+	295	150394760	-	SaurJH1_2323	-	GCN5-related N-acetyltransferase
2281	 36.11	0	2414074..2414937	+	287	150394761	-	SaurJH1_2324	-	sugar transport family protein
2282	 32.89	0	2415592..2416500	-	302	150394762	-	SaurJH1_2325	-	hypothetical protein
2283	 33.33	0	2416633..2416797	+	54	150394763	-	SaurJH1_2326	-	hypothetical protein
2284	 28.30	-1	2417042..2417359	+	105	150394764	-	SaurJH1_2327	-	hypothetical protein
2285	 34.03	0	2417543..2420710	-	1055	150394765	-	SaurJH1_2328	-	acriflavin resistance protein
2286	 33.97	0	2420827..2422092	-	421	150394766	-	SaurJH1_2329	-	methicillin resistance protein
2287	 27.78	-1	2422481..2422732	+	83	150394767	-	SaurJH1_2330	-	hypothetical protein
2288	 29.93	0	2422724..2423488	-	254	150394768	-	SaurJH1_2331	-	hypothetical protein
2289	 31.75	0	2423650..2424090	+	146	150394769	-	SaurJH1_2332	-	regulatory protein MarR
2290	 33.99	0	2424083..2425294	+	403	150394770	-	SaurJH1_2333	-	major facilitator transporter
2291	 28.77	-1	2425396..2425746	-	116	150394771	-	SaurJH1_2334	-	accessory regulator A-like protein
2292	 33.43	0	2426323..2427345	-	340	150394772	-	SaurJH1_2335	-	molybdenum cofactor biosynthesis protein A
2293	 32.17	0	2427365..2427964	-	199	150394773	mobA	SaurJH1_2336	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2294	 31.20	0	2427971..2428204	-	77	150394774	-	SaurJH1_2337	-	molybdopterin converting factor, subunit 1
2295	 35.57	0	2428210..2428656	-	148	150394775	-	SaurJH1_2338	-	molybdopterin biosynthesis MoaE protein
2296	 32.10	0	2428670..2429155	-	161	150394776	-	SaurJH1_2339	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2297	 37.86	+1	2429152..2430411	-	419	150394777	-	SaurJH1_2340	-	molybdenum cofactor synthesis domain-containing protein
2298	 38.79	+1	2430474..2430968	+	164	150394778	moaC	SaurJH1_2341	-	molybdenum cofactor biosynthesis protein C
2299	 37.87	+1	2430970..2431476	-	168	150394779	-	SaurJH1_2342	-	molybdenum cofactor synthesis domain-containing protein
2300	 34.83	0	2431507..2432511	-	334	150394780	-	SaurJH1_2343	-	UBA/THIF-type NAD/FAD binding protein
2301	 32.18	0	2432681..2433286	-	201	150394781	-	SaurJH1_2344	-	ABC transporter related
2302	 35.12	0	2433287..2433958	-	223	150394782	-	SaurJH1_2345	-	molybdate ABC transporter, inner membrane subunit
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.