IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2156	 35.76	0	2277032..2278348	-	438	150394636	rho	SaurJH1_2195	-	transcription termination factor Rho
2157	 36.27	0	2278595..2280022	-	475	150394637	-	SaurJH1_2196	-	aldehyde dehydrogenase
2158	 35.42	0	2280260..2280595	-	111	150394638	-	SaurJH1_2197	-	hypothetical protein
2159	 34.92	0	2280684..2281943	-	419	150394639	-	SaurJH1_2198	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2160	 36.59	+1	2282409..2283269	-	286	150394640	-	SaurJH1_2199	-	fructose-bisphosphate aldolase
2161	 31.03	0	2283487..2284008	+	173	150394641	-	SaurJH1_2200	-	hypothetical protein
2162	 33.77	0	2284117..2285727	-	536	150394642	-	SaurJH1_2201	-	CTP synthetase
2163	 32.77	0	2286063..2286593	-	176	150394643	-	SaurJH1_2202	-	DNA-directed RNA polymerase subunit delta
2164	 32.52	0	2286705..2287565	-	286	150394644	-	SaurJH1_2203	-	GCN5-related N-acetyltransferase
2165	 37.44	+1	2287990..2288793	+	267	150394645	-	SaurJH1_2204	-	pantothenate kinase
2166	 31.99	0	2288924..2289595	-	223	150394646	-	SaurJH1_2205	-	hypothetical protein
2167	 34.25	0	2289994..2291187	-	397	150394647	-	SaurJH1_2206	-	hypothetical protein
2168	 37.13	+1	2291187..2292371	-	394	150394648	-	SaurJH1_2207	-	amidohydrolase
2169	 33.97	0	2292682..2293152	+	156	150394649	-	SaurJH1_2208	-	S-ribosylhomocysteinase
2170	 31.62	0	2293304..2293654	-	116	150394650	-	SaurJH1_2209	-	hypothetical protein
2171	 36.10	0	2293668..2294969	-	433	150394651	-	SaurJH1_2210	-	pyrimidine-nucleoside phosphorylase
2172	 40.72	+2	2295248..2295910	-	220	150394652	-	SaurJH1_2211	-	deoxyribose-phosphate aldolase
2173	 34.60	0	2296224..2296934	+	236	150394653	deoD	SaurJH1_2212	-	purine nucleoside phosphorylase
2174	 33.56	0	2297055..2297498	-	147	150394654	-	SaurJH1_2213	-	Ferritin Dps family protein
2175	 32.13	0	2297698..2298111	-	137	150394655	-	SaurJH1_2214	-	hypothetical protein
2176	 32.02	0	2298568..2299941	-	457	150394656	-	SaurJH1_2215	-	hypothetical protein
2177	 36.80	+1	2300613..2300843	-	76	150394657	-	SaurJH1_2216	-	hypothetical protein
2178	 34.50	0	2300874..2301812	-	312	150394658	-	SaurJH1_2217	-	mannose-6-phosphate isomerase, class I
2179	 34.53	0	2302248..2302913	-	221	150394659	-	SaurJH1_2218	-	hypothetical protein
2180	 34.27	0	2303065..2303385	+	106	150394660	-	SaurJH1_2219	-	regulatory protein ArsR
2181	 33.23	0	2303387..2304364	+	325	150394661	-	SaurJH1_2220	-	cation diffusion facilitator family transporter
2182	 27.56	-1	2304630..2305721	+	363	150394662	-	SaurJH1_2221	-	lytic regulatory protein
2183	 33.22	0	2307754..2308611	-	285	150394663	-	SaurJH1_2223	-	Cof-like hydrolase
2184	 34.23	0	2308679..2309461	-	260	150394664	-	SaurJH1_2224	-	ABC transporter related
2185	 34.99	0	2309693..2311498	-	601	150394665	-	SaurJH1_2225	-	D-fructose-6-phosphate amidotransferase
2186	 35.87	0	2312179..2313717	+	512	150394666	-	SaurJH1_2226	-	PTS system, mannitol-specific IIC subunit
2187	 33.38	0	2313752..2315884	+	710	150394667	-	SaurJH1_2227	-	PRD domain-containing protein
2188	 35.63	0	2315896..2316330	+	144	150394668	-	SaurJH1_2228	-	phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2
2189	 33.33	0	2316330..2317436	+	368	150394669	-	SaurJH1_2229	-	mannitol-1-phosphate 5-dehydrogenase
2190	 35.21	0	2317755..2325200	-	2481	150394670	-	SaurJH1_2230	-	cell wall anchor domain-containing protein
2191	 34.51	0	2325478..2326833	-	451	150394671	-	SaurJH1_2231	-	phosphoglucosamine mutase
2192	 30.12	0	2326860..2327792	-	310	150394672	-	SaurJH1_2232	-	hypothetical protein
2193	 33.58	0	2327794..2328603	-	269	150394673	-	SaurJH1_2233	-	hypothetical protein
2194	 31.57	0	2328792..2329700	-	302	150394674	-	SaurJH1_2234	-	arginase
2195	 36.53	+1	2335941..2337005	-	354	150394675	-	SaurJH1_2235	-	ATP-binding Mrp/Nbp35 family protein
2196	 33.26	0	2337153..2338598	-	481	150394676	-	SaurJH1_2236	-	EmrB/QacA family drug resistance transporter
2197	 26.71	-1	2338918..2339385	-	155	150394677	-	SaurJH1_2237	-	hypothetical protein
2198	 30.43	0	2339490..2340833	-	447	150394678	-	SaurJH1_2238	-	major facilitator transporter
2199	 31.87	0	2341010..2341693	-	227	150394679	-	SaurJH1_2239	-	hemolysin III family channel protein
2200	 31.31	0	2341712..2342899	-	395	150394680	-	SaurJH1_2240	-	UTP--glucose-1-phosphate uridylyltransferase
2201	 34.11	0	2342943..2343458	-	171	150394681	-	SaurJH1_2241	-	hypothetical protein
2202	 30.65	0	2343635..2343895	+	86	150394682	-	SaurJH1_2242	-	hypothetical protein
2203	 35.81	0	2344027..2345397	-	456	150394683	-	SaurJH1_2243	-	nucleoside recognition domain-containing protein
2204	 33.44	0	2345633..2346601	-	322	150394684	-	SaurJH1_2244	-	transport system permease protein
2205	 34.30	0	2346598..2347629	-	343	150394685	-	SaurJH1_2245	-	transport system permease protein
2206	 30.89	0	2347641..2348624	-	327	150394686	-	SaurJH1_2246	-	periplasmic binding protein
2207	 32.54	0	2348790..2348915	+	41	150394687	-	SaurJH1_2247	-	hypothetical protein
2208	 30.81	0	2349016..2350086	-	356	150394688	-	SaurJH1_2248	-	alanine racemase domain-containing protein
2209	 32.48	0	2350093..2351850	-	585	150394689	-	SaurJH1_2249	-	hypothetical protein
2210	 32.24	0	2351837..2353030	-	397	150394690	-	SaurJH1_2250	-	major facilitator transporter
2211	 32.42	0	2353138..2355108	+	656	150394691	-	SaurJH1_2251	-	hypothetical protein
2212	 31.57	0	2355269..2355778	-	169	150394692	-	SaurJH1_2252	-	alkaline shock protein 23
2213	 30.42	0	2355841..2356080	-	79	150394693	-	SaurJH1_2253	-	hypothetical protein
2214	 32.77	0	2356093..2356629	-	178	150394694	-	SaurJH1_2254	-	hypothetical protein
2215	 35.51	0	2356804..2358366	-	520	150394695	-	SaurJH1_2255	-	choline/carnitine/betaine transporter
2216	 33.73	0	2358674..2359681	-	335	150394696	-	SaurJH1_2256	-	zinc-binding alcohol dehydrogenase
2217	 38.02	+1	2359916..2360917	-	333	150394697	-	SaurJH1_2257	-	alcohol dehydrogenase
2218	 33.79	0	2361195..2362064	-	289	150394698	-	SaurJH1_2258	-	hypothetical protein
2219	 34.75	0	2362330..2363742	-	470	150394699	-	SaurJH1_2259	-	6-phospho-beta-galactosidase
2220	 35.79	0	2363760..2365472	-	570	150394700	-	SaurJH1_2260	-	PTS system, lactose-specific IIC subunit
2221	 36.22	0	2365478..2365789	-	103	150394701	-	SaurJH1_2261	-	PTS system, lactose-specific IIA component
2222	 35.37	0	2365811..2366791	-	326	150394702	-	SaurJH1_2262	-	tagatose 1,6-diphosphate aldolase
2223	 35.16	0	2366795..2367727	-	310	150394703	-	SaurJH1_2263	-	tagatose-6-phosphate kinase
2224	 34.30	0	2367740..2368255	-	171	150394704	-	SaurJH1_2264	-	galactose-6-phosphate isomerase subunit LacB
2225	 36.60	+1	2368271..2368699	-	142	150394705	-	SaurJH1_2265	-	galactose-6-phosphate isomerase subunit LacA
2226	 34.22	0	2369066..2369857	-	263	150394706	-	SaurJH1_2266	-	lactose phosphotransferase system repressor
2227	 35.93	0	2370072..2370803	+	243	150394707	-	SaurJH1_2267	-	NAD-dependent deacetylase
2228	 25.98	-2	2371088..2371291	-	67	150394708	-	SaurJH1_2268	-	hypothetical protein
2229	 33.33	0	2371524..2372372	-	282	150394709	-	SaurJH1_2269	-	aldo/keto reductase
2230	 29.26	-1	2372442..2372858	-	138	150394710	-	SaurJH1_2270	-	regulatory protein MerR
2231	 33.17	0	2373266..2375695	+	809	150394711	-	SaurJH1_2271	-	polysaccharide lyase family protein 8
2232	 31.46	0	2375755..2376609	-	284	150394712	-	SaurJH1_2272	-	peptidase M23B
2233	 29.90	0	2376820..2377635	-	271	150394713	-	SaurJH1_2273	-	HAD family hydrolase
2234	 31.46	0	2377930..2378355	+	141	150394714	-	SaurJH1_2274	-	MAP domain-containing protein
2235	 33.19	0	2378739..2379443	-	234	150394715	-	SaurJH1_2275	-	acetolactate decarboxylase
2236	 34.77	0	2379480..2381144	-	554	150394716	-	SaurJH1_2276	-	acetolactate synthase
2237	 27.34	-1	2382394..2383410	-	338	150394717	-	SaurJH1_2277	-	RNA-directed DNA polymerase (Reverse transcriptase)
2238	 23.02	-2	2383655..2384284	-	209	150394718	-	SaurJH1_2278	-	hypothetical protein
2239	 21.76	-2	2384284..2384931	-	215	150394719	-	SaurJH1_2279	-	hypothetical protein
2240	 27.42	-1	2387910..2388095	+	61	150394720	-	SaurJH1_2283	-	hypothetical protein
2241	 25.74	-2	2388377..2389324	+	315	150394721	-	SaurJH1_2284	-	hypothetical protein
2242	 40.71	+2	2389500..2389892	-	130	150394722	rpsI	SaurJH1_2285	-	30S ribosomal protein S9
2243	 36.30	0	2389912..2390349	-	145	150394723	rplM	SaurJH1_2286	-	50S ribosomal protein L13
2244	 35.45	0	2390589..2391392	-	267	150394724	truA	SaurJH1_2287	-	tRNA pseudouridine synthase A
2245	 31.72	0	2391397..2392203	-	268	150394725	-	SaurJH1_2288	-	cobalt transport protein
2246	 34.26	0	2392193..2393053	-	286	150394726	-	SaurJH1_2289	-	cobalt transporter ATP-binding subunit
2247	 34.81	0	2393050..2393859	-	269	150394727	-	SaurJH1_2290	-	cobalt transporter ATP-binding subunit
2248	 37.40	+1	2394397..2394765	-	122	150394728	rplQ	SaurJH1_2291	-	50S ribosomal protein L17
2249	 33.76	0	2394782..2395726	-	314	150394729	-	SaurJH1_2292	-	DNA-directed RNA polymerase subunit alpha
2250	 40.00	+2	2395801..2396190	-	129	150394730	-	SaurJH1_2293	-	30S ribosomal protein S11
2251	 39.07	+1	2396214..2396579	-	121	150394731	rpsM	SaurJH1_2294	-	30S ribosomal protein S13
2252	 28.95	-1	2396602..2396715	-	37	150394732	rpmJ	SaurJH1_2295	-	50S ribosomal protein L36
2253	 33.33	0	2396747..2396965	-	72	150394733	-	SaurJH1_2296	-	translation initiation factor IF-1
2254	 35.65	0	2397158..2397805	-	215	150394734	-	SaurJH1_2297	-	adenylate kinase
2255	 34.57	0	2397822..2399114	-	430	150394735	secY	SaurJH1_2298	-	preprotein translocase subunit SecY
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.