IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2059	 30.83	0	2170352..2171389	+	345	150394539	-	SaurJH1_2097	-	phage integrase family protein
2060	 33.58	0	2171446..2172270	+	274	150394540	-	SaurJH1_2098	-	phospholipase C
2061	 30.38	0	2172508..2173524	-	338	150394541	-	SaurJH1_2099	-	beta-channel forming cytolysin
2062	 29.83	0	2173546..2174601	-	351	150394542	-	SaurJH1_2100	-	Combined leucocidin/ASH4 hemolysin
2063	 33.91	0	2175037..2176260	+	407	150394543	-	SaurJH1_2101	-	succinyl-diaminopimelate desuccinylase
2064	 28.67	-1	2176704..2178011	+	435	150394544	-	SaurJH1_2102	-	H(+)-transporting two-sector ATPase
2065	 37.35	+1	2178551..2180167	-	538	150394545	groEL	SaurJH1_2103	-	chaperonin GroEL
2066	 34.39	0	2180243..2180527	-	94	150394546	groES	SaurJH1_2104	-	co-chaperonin GroES
2067	 29.03	-1	2180702..2181445	+	247	150394547	-	SaurJH1_2105	-	hypothetical protein
2068	 36.27	0	2181470..2182729	-	419	150394548	-	SaurJH1_2106	-	SdrH protein, putative
2069	 31.26	0	2182926..2183552	+	208	150394549	-	SaurJH1_2107	-	hypothetical protein
2070	 32.06	0	2183913..2184698	+	261	150394550	-	SaurJH1_2108	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
2071	 30.86	0	2185298..2185378	-	26	150394551	-	SaurJH1_2109	-	delta lysin
2072	 25.71	-2	2185668..2186231	+	187	150394552	-	SaurJH1_2110	-	accessory gene regulator B
2073	 31.10	0	2187709..2188425	+	238	150394553	-	SaurJH1_2112	-	response regulator receiver
2074	 34.90	0	2188794..2189753	-	319	150394554	-	SaurJH1_2113	-	ribokinase-like domain-containing protein
2075	 33.54	0	2189750..2191234	-	494	150394555	-	SaurJH1_2114	-	sucrose-6-phosphate hydrolase
2076	 32.60	0	2191383..2192333	-	316	150394556	-	SaurJH1_2115	-	sucrose operon repressor
2077	 32.85	0	2192516..2193766	-	416	150394557	-	SaurJH1_2116	-	ammonium transporter
2078	 24.56	-2	2193769..2193882	-	37	150394558	-	SaurJH1_2117	-	hypothetical protein
2079	 34.67	0	2193974..2194198	-	74	150394559	-	SaurJH1_2118	-	hypothetical protein
2080	 36.30	0	2194258..2195337	-	359	150394560	-	SaurJH1_2119	-	hypothetical protein
2081	 33.96	0	2195641..2196276	-	211	150394561	-	SaurJH1_2120	-	redox-sensing transcriptional repressor Rex
2082	 32.09	0	2196529..2198457	+	642	150394562	-	SaurJH1_2121	-	ABC transporter related
2083	 30.42	0	2198819..2200429	+	536	150394563	-	SaurJH1_2122	-	DNA mismatch repair protein MutS domain-containing protein
2084	 37.52	+1	2200744..2201769	-	341	150394564	-	SaurJH1_2123	-	O-sialoglycoprotein endopeptidase
2085	 32.04	0	2201762..2202226	-	154	150394565	-	SaurJH1_2124	-	ribosomal-protein-alanine acetyltransferase
2086	 34.99	0	2202199..2202861	-	220	150394566	-	SaurJH1_2125	-	hypothetical protein
2087	 30.91	0	2202842..2203336	-	164	150394567	-	SaurJH1_2126	-	hypothetical protein
2088	 40.50	+2	2203814..2205502	+	562	150394568	-	SaurJH1_2127	-	dihydroxy-acid dehydratase
2089	 36.55	+1	2205530..2207299	+	589	150394569	-	SaurJH1_2128	-	acetolactate synthase large subunit
2090	 30.98	0	2207299..2207553	+	84	150394570	-	SaurJH1_2129	-	acetolactate synthase 1 regulatory subunit
2091	 35.22	0	2207690..2208694	+	334	150394571	-	SaurJH1_2130	-	ketol-acid reductoisomerase
2092	 36.14	0	2208724..2210253	+	509	150394572	-	SaurJH1_2131	-	2-isopropylmalate synthase
2093	 35.82	0	2210256..2211302	+	348	150394573	-	SaurJH1_2132	-	3-isopropylmalate dehydrogenase
2094	 38.00	+1	2211316..2212686	+	456	150394574	-	SaurJH1_2133	-	isopropylmalate isomerase large subunit
2095	 33.68	0	2212687..2213259	+	190	150394575	-	SaurJH1_2134	-	isopropylmalate isomerase small subunit
2096	 31.76	0	2213274..2214542	+	422	150394576	-	SaurJH1_2135	-	threonine dehydratase
2097	 33.77	0	2221340..2221795	-	151	150394577	-	SaurJH1_2136	-	hypothetical protein
2098	 33.57	0	2221788..2223938	-	716	150394578	-	SaurJH1_2137	-	RNA-binding S1 domain-containing protein
2099	 34.89	0	2224372..2225142	-	256	150394579	-	SaurJH1_2138	-	RNA polymerase sigma factor SigB
2100	 32.71	0	2225117..2225596	-	159	150394580	-	SaurJH1_2139	-	serine-protein kinase RsbW
2101	 31.80	0	2225598..2225924	-	108	150394581	-	SaurJH1_2140	-	anti-anti-sigma factor
2102	 31.34	0	2226043..2227044	-	333	150394582	-	SaurJH1_2141	-	stage II sporulation E family protein
2103	 23.93	-2	2227196..2227429	+	77	150394583	-	SaurJH1_2142	-	hypothetical protein
2104	 33.06	0	2227394..2227756	-	120	150394584	-	SaurJH1_2143	-	PemK family protein
2105	 33.33	0	2227753..2227923	-	56	150394585	-	SaurJH1_2144	-	hypothetical protein
2106	 36.03	0	2228008..2229156	-	382	150394586	-	SaurJH1_2145	-	alanine racemase
2107	 35.56	0	2229222..2229581	-	119	150394587	-	SaurJH1_2146	-	holo-acyl-carrier-protein synthase
2108	 33.54	0	2229585..2230076	-	163	150394588	-	SaurJH1_2147	-	membrane-flanked domain-containing protein
2109	 31.63	0	2230063..2231646	-	527	150394589	-	SaurJH1_2148	-	membrane-flanked domain-containing protein
2110	 30.21	0	2231639..2232118	-	159	150394590	-	SaurJH1_2149	-	hypothetical protein
2111	 36.01	0	2232326..2232886	-	186	150394591	-	SaurJH1_2150	-	potassium-transporting ATPase, C subunit
2112	 34.86	0	2232906..2234933	-	675	150394592	-	SaurJH1_2151	-	K+-transporting ATPase, B subunit
2113	 32.56	0	2234952..2236628	-	558	150394593	-	SaurJH1_2152	-	potassium-transporting ATPase subunit A
2114	 31.90	0	2236900..2239557	+	885	150394594	-	SaurJH1_2153	-	osmosensitive K channel His kinase sensor
2115	 32.76	0	2239557..2240252	+	231	150394595	-	SaurJH1_2154	-	response regulator receiver
2116	 30.91	0	2240636..2241955	-	439	150394596	-	SaurJH1_2155	-	transposase IS204/IS1001/IS1096/IS1165 family protein
2117	 36.55	+1	2242124..2243644	-	506	150394597	-	SaurJH1_2156	-	DEAD/DEAH box helicase domain-containing protein
2118	 33.41	0	2244161..2245519	-	452	150394598	-	SaurJH1_2157	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
2119	 33.80	0	2245534..2246604	-	356	150394599	ddl	SaurJH1_2158	-	D-alanyl-alanine synthetase A
2120	 33.00	0	2246922..2248124	+	400	150394600	-	SaurJH1_2159	-	cell cycle protein
2121	 26.81	-1	2248388..2248525	-	45	150394601	-	SaurJH1_2160	-	hypothetical protein
2122	 30.00	0	2248653..2248862	-	69	150394602	-	SaurJH1_2161	-	hypothetical protein
2123	 33.33	0	2248874..2249167	-	97	150394603	-	SaurJH1_2162	-	hypothetical protein
2124	 32.66	0	2249333..2250817	+	494	150394604	-	SaurJH1_2163	-	phospholipase D/transphosphatidylase
2125	 34.26	0	2250845..2251492	+	215	150394605	-	SaurJH1_2164	-	metal-dependent phosphohydrolase
2126	 33.79	0	2252405..2253277	-	290	150394606	-	SaurJH1_2165	-	60 kDa inner membrane insertion protein
2127	 35.51	0	2253363..2254004	-	213	150394607	-	SaurJH1_2166	-	thiamine-phosphate pyrophosphorylase
2128	 35.48	0	2254006..2254797	-	263	150394608	-	SaurJH1_2167	-	hydroxyethylthiazole kinase
2129	 35.50	0	2254781..2255611	-	276	150394609	-	SaurJH1_2168	-	phosphomethylpyrimidine kinase
2130	 32.90	0	2255604..2256293	-	229	150394610	-	SaurJH1_2169	-	TENA/THI-4 domain-containing protein
2131	 39.08	+1	2256680..2257375	-	231	150394611	-	SaurJH1_2170	-	transglycosylase domain-containing protein
2132	 30.30	0	2257764..2258159	-	131	150394612	-	SaurJH1_2171	-	single-strand binding protein
2133	 30.61	0	2258353..2258793	+	146	150394613	-	SaurJH1_2172	-	hypothetical protein
2134	 33.56	0	2258852..2259292	-	146	150394614	-	SaurJH1_2173	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
2135	 36.02	0	2259326..2260591	-	421	150394615	-	SaurJH1_2174	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2136	 28.63	-1	2260702..2260935	-	77	150394616	-	SaurJH1_2175	-	hypothetical protein
2137	 36.54	+1	2261497..2261901	-	134	150394617	-	SaurJH1_2176	-	F0F1 ATP synthase subunit epsilon
2138	 38.71	+1	2261921..2263333	-	470	150394618	-	SaurJH1_2177	-	F0F1 ATP synthase subunit beta
2139	 34.95	0	2263355..2264221	-	288	150394619	-	SaurJH1_2178	-	F0F1 ATP synthase subunit gamma
2140	 36.91	+1	2264252..2265760	-	502	150394620	-	SaurJH1_2179	-	F0F1 ATP synthase subunit alpha
2141	 30.00	0	2265782..2266321	-	179	150394621	-	SaurJH1_2180	-	F0F1 ATP synthase subunit delta
2142	 36.02	0	2266321..2266842	-	173	150394622	-	SaurJH1_2181	-	F0F1 ATP synthase subunit B
2143	 40.38	+2	2267040..2267252	-	70	150394623	-	SaurJH1_2182	-	F0F1 ATP synthase subunit C
2144	 35.53	0	2267295..2268023	-	242	150394624	-	SaurJH1_2183	-	F0F1 ATP synthase subunit A
2145	 30.23	0	2268044..2268397	-	117	150394625	-	SaurJH1_2184	-	hypothetical protein
2146	 34.66	0	2268564..2269691	-	375	150394626	-	SaurJH1_2185	-	UDP-GlcNAc 2-epimerase
2147	 36.51	+1	2269715..2270344	-	209	150394627	-	SaurJH1_2186	-	uracil phosphoribosyltransferase
2148	 36.80	+1	2270372..2271610	-	412	150394628	-	SaurJH1_2187	-	serine hydroxymethyltransferase
2149	 36.57	+1	2271637..2272161	-	174	150394629	-	SaurJH1_2188	-	hypothetical protein
2150	 32.86	0	2272268..2272687	-	139	150394630	-	SaurJH1_2189	-	low molecular weight phosphotyrosine protein phosphatase
2151	 35.10	0	2272684..2273757	-	357	150394631	-	SaurJH1_2190	-	Sua5/YciO/YrdC/YwlC family protein
2152	 34.53	0	2273814..2274650	-	278	150394632	-	SaurJH1_2191	-	HemK family modification methylase
2153	 35.19	0	2274637..2275713	-	358	150394633	prfA	SaurJH1_2192	-	peptide chain release factor 1
2154	 36.83	+1	2275714..2276313	-	199	150394634	-	SaurJH1_2193	-	thymidine kinase
2155	 35.69	0	2276660..2276914	-	84	150394635	rpmE2	SaurJH1_2194	-	50S ribosomal protein L31 type B
2156	 35.76	0	2277032..2278348	-	438	150394636	rho	SaurJH1_2195	-	transcription termination factor Rho
2157	 36.27	0	2278595..2280022	-	475	150394637	-	SaurJH1_2196	-	aldehyde dehydrogenase
2158	 35.42	0	2280260..2280595	-	111	150394638	-	SaurJH1_2197	-	hypothetical protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.