IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
155	 33.92	0	182808..183320	+	170	150392635	-	SaurJH1_0161	-	hypothetical protein
156	 35.36	0	183662..184402	+	246	150392636	-	SaurJH1_0162	-	ABC transporter related
157	 36.93	+1	184416..185387	+	323	150392637	-	SaurJH1_0163	-	NLPA lipoprotein
158	 35.17	0	185384..186145	+	253	150392638	-	SaurJH1_0164	-	binding-protein-dependent transport systems inner membrane component
159	 35.94	0	186155..187189	+	344	150392639	-	SaurJH1_0165	-	hypothetical protein
160	 32.22	0	187406..187765	+	119	150392640	-	SaurJH1_0166	-	hypothetical protein
161	 34.84	0	187840..188964	+	374	150392641	-	SaurJH1_0167	-	formate dehydrogenase
162	 32.53	0	189350..190600	+	416	150392642	-	SaurJH1_0168	-	major facilitator transporter
163	 35.27	0	191047..198222	+	2391	150392643	-	SaurJH1_0169	-	thioester reductase domain-containing protein
164	 33.64	0	198235..198879	+	214	150392644	-	SaurJH1_0170	-	4'-phosphopantetheinyl transferase
165	 36.36	0	199207..199701	-	164	150392645	-	SaurJH1_0171	-	hypothetical protein
166	 34.64	0	199956..200720	-	254	150392646	-	SaurJH1_0172	-	acetylglutamate kinase
167	 37.84	+1	200736..201977	-	413	150392647	argJ	SaurJH1_0173	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
168	 35.07	0	201989..203023	-	344	150392648	argC	SaurJH1_0174	-	N-acetyl-gamma-glutamyl-phosphate reductase
169	 37.55	+1	203059..204243	-	394	150392649	-	SaurJH1_0175	-	ornithine aminotransferase
170	 33.04	0	204502..205851	-	449	150392650	-	SaurJH1_0176	-	branched-chain amino acid transport system II carrier protein
171	 35.30	0	206130..206687	-	185	150392651	-	SaurJH1_0177	-	isochorismatase hydrolase
172	 36.68	+1	206754..208394	-	546	150392652	-	SaurJH1_0178	-	thiamine pyrophosphate binding domain-containing protein
173	 37.59	+1	208667..210712	-	681	150392653	-	SaurJH1_0179	-	PTS system, glucose-specific IIBC subunit
174	 35.32	0	211297..212352	+	351	150392654	-	SaurJH1_0180	-	hypothetical protein
175	 38.13	+1	212352..213248	+	298	150392655	murQ	SaurJH1_0181	-	N-acetylmuramic acid-6-phosphate etherase
176	 37.87	+1	213260..214714	+	484	150392656	-	SaurJH1_0182	-	phosphotransferase system EIIC
177	 34.36	0	214717..215592	+	291	150392657	-	SaurJH1_0183	-	helix-turn-helix protein RpiR
178	 28.72	-1	215786..216067	-	93	150392658	-	SaurJH1_0184	-	hypothetical protein
179	 33.15	0	216280..219069	+	929	150392659	-	SaurJH1_0185	-	HsdR family type I site-specific deoxyribonuclease
180	 29.17	-1	219216..219815	-	199	150392660	-	SaurJH1_0186	-	hypothetical protein
181	 30.46	0	219940..221052	+	370	150392661	-	SaurJH1_0187	-	hypothetical protein
182	 31.42	0	221049..221729	+	226	150392662	-	SaurJH1_0188	-	ABC transporter related
183	 30.70	0	221726..222904	+	392	150392663	-	SaurJH1_0189	-	hypothetical protein
184	 41.44	+2	223111..223332	+	73	150392664	-	SaurJH1_0190	-	hypothetical protein
185	 23.37	-2	223403..225088	+	561	150392665	-	SaurJH1_0191	-	hypothetical protein
186	 25.59	-2	225126..225590	+	154	150392666	-	SaurJH1_0192	-	hypothetical protein
187	 26.56	-1	225602..226324	+	240	150392667	-	SaurJH1_0193	-	ABC transporter related
188	 22.60	-2	226311..226487	+	58	150392668	-	SaurJH1_0194	-	hypothetical protein
189	 30.81	0	226490..226687	+	65	150392669	-	SaurJH1_0195	-	helix-turn-helix domain-containing protein
190	 35.47	0	227197..228789	-	530	150392670	-	SaurJH1_0196	-	ABC transporter related
191	 32.89	0	228878..230224	+	448	150392671	-	SaurJH1_0197	-	binding-protein-dependent transport systems inner membrane component
192	 34.62	0	230230..231393	+	387	150392672	-	SaurJH1_0198	-	binding-protein-dependent transport systems inner membrane component
193	 33.16	0	231410..233185	+	591	150392673	-	SaurJH1_0199	-	RGD-containing lipoprotein
194	 37.82	+1	233223..235229	+	668	150392674	-	SaurJH1_0200	-	gamma-glutamyltransferase
195	 29.72	0	235542..236315	-	257	150392675	-	SaurJH1_0201	-	putative lipoprotein
196	 32.38	0	236504..237130	-	208	150392676	-	SaurJH1_0202	-	azoreductase
197	 35.92	0	237339..237917	+	192	150392677	-	SaurJH1_0203	-	peptidase M23B
198	 34.97	0	238301..239398	+	365	150392678	-	SaurJH1_0204	-	ABC transporter related
199	 34.20	0	239411..240682	+	423	150392679	-	SaurJH1_0205	-	extracellular solute-binding protein
200	 35.70	0	240685..241953	+	422	150392680	-	SaurJH1_0206	-	binding-protein-dependent transport systems inner membrane component
201	 33.81	0	241955..242794	+	279	150392681	-	SaurJH1_0207	-	binding-protein-dependent transport systems inner membrane component
202	 39.63	+1	242865..243944	+	359	150392682	-	SaurJH1_0208	-	oxidoreductase domain-containing protein
203	 39.77	+1	243969..245009	+	346	150392683	-	SaurJH1_0209	-	oxidoreductase domain-containing protein
204	 35.60	0	245064..246032	+	322	150392684	-	SaurJH1_0210	-	xylose isomerase domain-containing protein
205	 26.46	-1	246393..246887	-	164	150392685	-	SaurJH1_0211	-	hypothetical protein
206	 36.16	0	247120..248499	+	459	150392686	uhpT	SaurJH1_0212	-	sugar phosphate antiporter
207	 32.41	0	248858..249616	-	252	150392687	-	SaurJH1_0213	-	response regulator receiver
208	 32.88	0	249609..251165	-	518	150392688	-	SaurJH1_0214	-	histidine kinase internal region
209	 34.16	0	251162..252130	-	322	150392689	-	SaurJH1_0215	-	hypothetical protein
210	 36.76	+1	252718..254967	+	749	150392690	-	SaurJH1_0216	-	formate acetyltransferase
211	 36.38	0	254990..255745	+	251	150392691	-	SaurJH1_0217	-	pyruvate formate-lyase activating enzyme
212	 31.01	0	256067..257830	+	587	150392692	-	SaurJH1_0218	-	hypothetical protein
213	 31.88	0	257994..258338	-	114	150392693	-	SaurJH1_0219	-	hypothetical protein
214	 34.65	0	258528..260504	+	658	150392694	-	SaurJH1_0220	-	staphylocoagulase precursor
215	 43.63	+2	261091..262275	-	394	150392695	-	SaurJH1_0221	-	acetyl-CoA acetyltransferase
216	 37.53	+1	262305..264566	-	753	150392696	-	SaurJH1_0222	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
217	 39.19	+1	264752..265963	-	403	150392697	-	SaurJH1_0223	-	acyl-CoA dehydrogenase domain-containing protein
218	 37.38	+1	266075..267580	-	501	150392698	-	SaurJH1_0224	-	AMP-dependent synthetase and ligase
219	 36.92	+1	267606..269168	-	520	150392699	-	SaurJH1_0225	-	coenzyme A transferase
220	 34.55	0	269537..270766	+	409	150392700	-	SaurJH1_0226	-	hypothetical protein
221	 31.07	0	271080..272492	-	470	150392701	-	SaurJH1_0227	-	extracellular solute-binding protein
222	 35.29	0	272753..273109	-	118	150392702	-	SaurJH1_0228	-	hypothetical protein
223	 25.86	-2	273266..273439	-	57	150392703	-	SaurJH1_0229	-	hypothetical protein
224	 34.90	0	273465..274610	-	381	150392704	-	SaurJH1_0230	-	globin
225	 37.21	+1	275183..276136	+	317	150392705	-	SaurJH1_0231	-	L-lactate dehydrogenase
226	 37.30	+1	276304..276429	-	41	150392706	-	SaurJH1_0232	-	hypothetical protein
227	 39.22	+1	276456..277985	-	509	150392707	-	SaurJH1_0233	-	PTS system, glucose-like IIB subunint
228	 39.53	+1	278347..279282	+	311	150392708	-	SaurJH1_0234	-	purine nucleosidase
229	 33.09	0	279620..281716	+	698	150392709	-	SaurJH1_0235	-	PRD domain-containing protein
230	 35.26	0	281701..282168	+	155	150392710	-	SaurJH1_0236	-	phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2
231	 31.18	0	282191..282469	+	92	150392711	-	SaurJH1_0237	-	phosphotransferase system lactose/cellobiose-specific IIB subunit
232	 36.98	+1	282696..283955	+	419	150392712	-	SaurJH1_0238	-	PTS system, galactitol-specific IIC subunit
233	 36.74	+1	283973..285028	+	351	150392713	-	SaurJH1_0239	-	alcohol dehydrogenase
234	 30.61	0	285030..285176	+	48	150392714	-	SaurJH1_0240	-	hypothetical protein
235	 38.12	+1	285200..286243	+	347	150392715	-	SaurJH1_0241	-	alcohol dehydrogenase
236	 32.91	0	286771..287487	+	238	150392716	-	SaurJH1_0242	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
237	 35.09	0	287480..288505	+	341	150392717	-	SaurJH1_0243	-	alcohol dehydrogenase
238	 32.86	0	288527..290221	+	564	150392718	-	SaurJH1_0244	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
239	 33.42	0	290649..291818	+	389	150392719	-	SaurJH1_0245	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
240	 32.22	0	292094..292810	+	238	150392720	ispD	SaurJH1_0246	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
241	 33.33	0	292803..293828	+	341	150392721	-	SaurJH1_0247	-	alcohol dehydrogenase
242	 31.97	0	293850..295538	+	562	150392722	-	SaurJH1_0248	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
243	 32.11	0	295571..297292	+	573	150392723	-	SaurJH1_0249	-	glycosyl transferase family protein
244	 32.30	0	297436..298110	+	224	150392724	-	SaurJH1_0250	-	cell wall biosynthesis protein ScdA
245	 35.56	0	298355..300109	+	584	150392725	-	SaurJH1_0251	-	5TM Receptors of the LytS-YhcK type transmembrane region
246	 32.39	0	300112..300852	+	246	150392726	-	SaurJH1_0252	-	response regulator receiver
247	 34.47	0	300971..301408	+	145	150392727	-	SaurJH1_0253	-	murein hydrolase regulator LrgA
248	 36.61	+1	301401..302102	+	233	150392728	-	SaurJH1_0254	-	antiholin-like protein LrgB
249	 33.05	0	302210..302914	-	234	150392729	-	SaurJH1_0255	-	UbiC transcription regulator-associated domain-containing protein
250	 35.23	0	303063..303854	+	263	150392730	-	SaurJH1_0256	-	PTS system, glucose subfamily, IIA subunit
251	 36.67	+1	303870..305306	+	478	150392731	-	SaurJH1_0257	-	glycoside hydrolase family protein
252	 34.12	0	305683..306444	-	253	150392732	-	SaurJH1_0258	-	hypothetical protein
253	 37.70	+1	306695..307609	-	304	150392733	-	SaurJH1_0259	-	ribokinase
254	 32.59	0	307637..308041	-	134	150392734	-	SaurJH1_0260	-	D-ribose pyranase
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.