IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.01   STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1938	 33.97	0	2070311..2070940	-	209	150394418	-	SaurJH1_1972	-	response regulator receiver
1939	 31.90	0	2070930..2071973	-	347	150394419	-	SaurJH1_1973	-	histidine kinase
1940	 30.06	0	2071970..2072671	-	233	150394420	-	SaurJH1_1974	-	hypothetical protein
1941	 26.10	-2	2072686..2073072	-	128	150394421	-	SaurJH1_1975	-	hypothetical protein
1942	 35.70	0	2073289..2074047	-	252	150394422	-	SaurJH1_1976	-	methionine aminopeptidase
1943	 32.22	0	2074519..2075505	+	328	150394423	-	SaurJH1_1977	-	hypothetical protein
1944	 26.09	-2	2075936..2076349	-	137	150394424	-	SaurJH1_1978	-	hypothetical protein
1945	 30.87	0	2076574..2077305	-	243	150394425	-	SaurJH1_1979	-	glutamine amidotransferase
1946	 34.32	0	2077307..2078620	-	437	150394426	-	SaurJH1_1980	-	hypothetical protein
1947	 34.53	0	2078912..2079412	+	166	150394427	-	SaurJH1_1981	-	Ferritin Dps family protein
1948	 31.89	0	2079802..2080356	+	184	150394428	-	SaurJH1_1982	-	exonuclease RNase T and DNA polymerase III
1949	 34.45	0	2080424..2081494	-	356	150394429	-	SaurJH1_1983	-	DNA-directed DNA polymerase
1950	 28.81	-1	2081741..2082271	-	176	150394430	-	SaurJH1_1984	-	hypothetical protein
1951	 32.97	0	2082441..2083802	-	453	150394431	-	SaurJH1_1985	-	RNA methyltransferase
1952	 33.76	0	2083883..2084830	-	315	150394432	-	SaurJH1_1986	-	putative lipid kinase
1953	 23.81	-2	2085412..2085558	-	48	150394433	-	SaurJH1_1987	-	hypothetical protein
1954	 34.87	0	2085598..2087025	-	475	150394434	gatB	SaurJH1_1988	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1955	 34.16	0	2087038..2088495	-	485	150394435	-	SaurJH1_1989	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
1956	 35.97	0	2088497..2088799	-	100	150394436	gatC	SaurJH1_1990	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1957	 35.93	0	2089166..2090704	+	512	150394437	-	SaurJH1_1991	-	high affinity proline permease
1958	 30.67	0	2090793..2091992	-	399	150394438	-	SaurJH1_1992	-	CamS sex pheromone cAM373 family protein
1959	 33.98	0	2092005..2094008	-	667	150394439	-	SaurJH1_1993	-	DNA ligase, NAD-dependent
1960	 34.34	0	2094012..2096204	-	730	150394440	-	SaurJH1_1994	-	ATP-dependent DNA helicase PcrA
1961	 33.33	0	2096201..2096893	-	230	150394441	-	SaurJH1_1995	-	geranylgeranylglyceryl phosphate synthase-like protein
1962	 32.01	0	2097065..2097367	-	100	150394442	-	SaurJH1_1996	-	hypothetical protein
1963	 35.49	0	2097476..2098771	-	431	150394443	-	SaurJH1_1997	-	adenylosuccinate lyase
1964	 31.36	0	2099631..2100797	+	388	150394444	-	SaurJH1_1998	-	staphopain
1965	 25.99	-2	2100828..2101154	+	108	150394445	-	SaurJH1_1999	-	hypothetical protein
1966	 33.91	0	2101446..2101619	-	57	150394446	-	SaurJH1_2000	-	hypothetical protein
1967	 32.34	0	2101600..2102202	-	200	150394447	-	SaurJH1_2001	-	hypothetical protein
1968	 34.06	0	2102473..2103294	-	273	150394448	nadE	SaurJH1_2002	-	NAD synthetase
1969	 33.20	0	2103287..2104756	-	489	150394449	-	SaurJH1_2003	-	nicotinate phosphoribosyltransferase
1970	 33.52	0	2104940..2106016	+	358	150394450	-	SaurJH1_2004	-	nitric-oxide synthase
1971	 32.96	0	2106036..2106830	+	264	150394451	-	SaurJH1_2005	-	prephenate dehydratase
1972	 34.36	0	2107020..2108582	-	520	150394452	-	SaurJH1_2006	-	anion transporter
1973	 32.88	0	2108787..2109884	-	365	150394453	-	SaurJH1_2007	-	parallel beta-helix repeat-containing protein
1974	 34.40	0	2110253..2110813	+	186	150394454	-	SaurJH1_2008	-	isochorismatase hydrolase
1975	 34.09	0	2110866..2111795	+	309	150394455	-	SaurJH1_2009	-	putative manganese-dependent inorganic pyrophosphatase
1976	 33.33	0	2112213..2113592	+	459	150394456	-	SaurJH1_2010	-	aldehyde dehydrogenase
1977	 32.85	0	2113712..2114740	-	342	150394457	-	SaurJH1_2011	-	hypothetical protein
1978	 33.33	0	2115010..2115411	+	133	150394458	-	SaurJH1_2012	-	hypothetical protein
1979	 24.14	-2	2115984..2116157	-	57	150394459	-	SaurJH1_2014	-	hypothetical protein
1980	 33.33	0	2116536..2117648	+	370	150394460	-	SaurJH1_2015	-	hypothetical protein
1981	 29.30	-1	2117705..2118547	-	280	150394461	-	SaurJH1_2016	-	hypothetical protein
1982	 28.67	-1	2118544..2119101	-	185	150394462	-	SaurJH1_2017	-	hypothetical protein
1983	 27.81	-1	2119161..2119685	-	174	150394463	-	SaurJH1_2018	-	hypothetical protein
1984	 31.74	0	2119806..2120369	+	187	150394464	-	SaurJH1_2019	-	hypothetical protein
1985	 27.13	-1	2120435..2121175	-	246	150394465	-	SaurJH1_2020	-	hypothetical protein
1986	 28.87	-1	2121175..2122047	-	290	150394466	-	SaurJH1_2021	-	ABC transporter related
1987	 26.87	-1	2122044..2122724	-	226	150394467	-	SaurJH1_2022	-	hypothetical protein
1988	 31.10	0	2122725..2123621	-	298	150394468	-	SaurJH1_2023	-	ABC transporter related
1989	 32.02	0	2123618..2123998	-	126	150394469	-	SaurJH1_2024	-	regulatory protein GntR HTH
1990	 23.73	-2	2124256..2124432	-	58	150394470	-	SaurJH1_2025	-	hypothetical protein
1991	 33.33	0	2124675..2124773	-	32	150394471	-	SaurJH1_2026	-	hypothetical protein
1992	 33.49	0	2124973..2126259	+	428	150394472	-	SaurJH1_2027	-	hypothetical protein
1993	 30.92	0	2128653..2128859	+	68	150394473	-	SaurJH1_2030	-	truncated beta-hemolysin
1994	 26.67	-1	2129231..2129410	+	59	150394474	-	SaurJH1_2031	-	hypothetical protein
1995	 24.92	-2	2129434..2129742	+	102	150394475	-	SaurJH1_2032	-	hypothetical protein
1996	 24.52	-2	2129721..2129981	+	86	150394476	-	SaurJH1_2033	-	hypothetical protein
1997	 29.06	-1	2130034..2130384	-	116	150394477	-	SaurJH1_2034	-	hypothetical protein
1998	 28.22	-1	2131069..2131518	+	149	150394478	-	SaurJH1_2035	-	chemotaxis-inhibiting protein CHIPS
1999	 32.32	0	2132598..2133089	-	163	150394479	-	SaurJH1_2037	-	staphylokinase precursor
2000	 35.19	0	2133280..2134035	-	251	150394480	-	SaurJH1_2038	-	CHAP domain-containing protein
2001	 32.55	0	2134047..2134301	-	84	150394481	-	SaurJH1_2039	-	phage phi LC3 family holin
2002	 36.02	0	2134513..2134698	-	61	150394482	-	SaurJH1_2040	-	hypothetical protein
2003	 33.33	0	2134839..2135135	-	98	150394483	-	SaurJH1_2041	-	hypothetical protein
2004	 30.90	0	2135193..2135480	-	95	150394484	-	SaurJH1_2042	-	phi PVL orf 22-like protein
2005	 30.72	0	2135527..2135679	-	50	150394485	-	SaurJH1_2043	-	hypothetical protein
2006	 35.39	0	2135669..2139454	-	1261	150394486	-	SaurJH1_2044	-	phage minor structural protein
2007	 34.88	0	2139470..2140954	-	494	150394487	-	SaurJH1_2045	-	hypothetical protein
2008	 36.75	+1	2140951..2145483	-	1510	150394488	-	SaurJH1_2046	-	TP901 family phage tail tape measure protein
2009	 28.40	-1	2145540..2145701	-	53	150394489	-	SaurJH1_2047	-	phi77 ORF100-like protein
2010	 33.05	0	2145728..2146078	-	116	150394490	-	SaurJH1_2048	-	hypothetical protein
2011	 34.75	0	2146128..2146268	-	46	150394491	-	SaurJH1_2049	-	hypothetical protein
2012	 36.28	0	2146394..2147038	-	214	150394492	-	SaurJH1_2050	-	phi13 family phage major tail protein
2013	 29.66	0	2147039..2147446	-	135	150394493	-	SaurJH1_2051	-	hypothetical protein
2014	 34.81	0	2147443..2147847	-	134	150394494	-	SaurJH1_2052	-	hypothetical protein
2015	 31.40	0	2147844..2148206	-	120	150394495	-	SaurJH1_2053	-	phage head-tail adaptor, putative
2016	 31.23	0	2148190..2148474	-	94	150394496	-	SaurJH1_2054	-	hypothetical protein
2017	 32.18	0	2148487..2148747	-	86	150394497	-	SaurJH1_2055	-	phi77 ORF045-like protein
2018	 34.82	0	2148767..2149912	-	381	150394498	-	SaurJH1_2056	-	phi77 ORF006-like protein, putative capsid protein
2019	 35.77	0	2149935..2150672	-	245	150394499	-	SaurJH1_2057	-	peptidase S14 ClpP
2020	 32.13	0	2150656..2151819	-	387	150394500	-	SaurJH1_2058	-	HK97 family phage portal protein
2021	 32.73	0	2151835..2153496	-	553	150394501	-	SaurJH1_2059	-	phage terminase
2022	 33.04	0	2153493..2153837	-	114	150394502	-	SaurJH1_2060	-	hypothetical protein
2023	 38.00	+1	2153825..2153974	-	49	150394503	-	SaurJH1_2061	-	hypothetical protein
2024	 30.67	0	2153968..2154267	-	99	150394504	-	SaurJH1_2062	-	HNH endonuclease
2025	 34.53	0	2154499..2154915	-	138	150394505	-	SaurJH1_2063	-	RinA family phage transcriptional regulator
2026	 29.41	-1	2154943..2155146	-	67	150394506	-	SaurJH1_2064	-	hypothetical protein
2027	 36.67	+1	2155143..2155292	-	49	150394507	-	SaurJH1_2065	-	transcriptional activator RinB
2028	 37.68	+1	2155289..2155495	-	68	150394508	-	SaurJH1_2066	-	hypothetical protein
2029	 27.85	-1	2155492..2155728	-	78	150394509	-	SaurJH1_2067	-	hypothetical protein
2030	 31.84	0	2155774..2156310	-	178	150394510	-	SaurJH1_2068	-	dUTPase
2031	 36.14	0	2156307..2156555	-	82	150394511	-	SaurJH1_2069	-	hypothetical protein
2032	 37.86	+1	2156567..2156809	-	80	150394512	-	SaurJH1_2070	-	phage conserved Open Reading Frame 51
2033	 38.37	+1	2156812..2157069	-	85	150394513	-	SaurJH1_2071	-	hypothetical protein
2034	 38.17	+1	2157069..2157440	-	123	150394514	-	SaurJH1_2072	-	PVL ORF-50 family protein
2035	 36.30	0	2157453..2157857	-	134	150394515	-	SaurJH1_2073	-	endodeoxyribonuclease RusA
2036	 29.68	0	2157866..2158084	-	72	150394516	-	SaurJH1_2074	-	hypothetical protein
2037	 33.67	0	2158091..2158984	-	297	150394517	-	SaurJH1_2075	-	primosome, DnaD subunit
33.01	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.