IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1880	 25.26	-2	1999490..2000245	-	251	150394360	-	SaurJH1_1913	-	toxin OB-fold domain-containing protein
1881	 25.93	-2	2001209..2001937	-	242	150394361	-	SaurJH1_1915	-	toxin beta-grasp domain-containing protein
1882	 28.47	-1	2001972..2002691	-	239	150394362	-	SaurJH1_1916	-	toxin beta-grasp domain-containing protein
1883	 25.75	-2	2002972..2003736	-	254	150394363	-	SaurJH1_1917	-	toxin OB-fold domain-containing protein
1884	 33.69	0	2005114..2005668	-	184	150394364	-	SaurJH1_1918	-	hypothetical protein
1885	 34.98	0	2005991..2007391	-	466	150394365	-	SaurJH1_1919	-	protoporphyrinogen oxidase
1886	 33.33	0	2007415..2008338	-	307	150394366	hemH	SaurJH1_1920	-	ferrochelatase
1887	 34.78	0	2008396..2009433	-	345	150394367	hemE	SaurJH1_1921	-	uroporphyrinogen decarboxylase
1888	 31.35	0	2009696..2010199	+	167	150394368	-	SaurJH1_1922	-	hypothetical protein
1889	 29.98	0	2010323..2011546	-	407	150394369	-	SaurJH1_1923	-	ABC transporter EcsB
1890	 34.68	0	2011539..2012279	-	246	150394370	-	SaurJH1_1924	-	ABC transporter related
1891	 30.50	0	2012413..2012835	+	140	150394371	-	SaurJH1_1925	-	histidine triad (HIT) protein
1892	 36.61	+1	2012977..2013342	+	121	150394372	-	SaurJH1_1926	-	hypothetical protein
1893	 24.19	-2	2014077..2014634	+	185	150394373	-	SaurJH1_1927	-	hypothetical protein
1894	 30.84	0	2014839..2015801	+	320	150394374	-	SaurJH1_1928	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1895	 33.65	0	2015922..2016863	-	313	150394375	-	SaurJH1_1929	-	3'-5' exoribonuclease YhaM
1896	 30.81	0	2016860..2019796	-	978	150394376	-	SaurJH1_1930	-	hypothetical protein
1897	 29.91	0	2019786..2020982	-	398	150394377	-	SaurJH1_1931	-	metallophosphoesterase
1898	 31.88	0	2021910..2022254	-	114	150394378	-	SaurJH1_1932	-	hypothetical protein
1899	 30.04	0	2022323..2023447	-	374	150394379	-	SaurJH1_1933	-	hypothetical protein
1900	 30.91	0	2023726..2025045	+	439	150394380	-	SaurJH1_1934	-	transposase IS204/IS1001/IS1096/IS1165 family protein
1901	 31.83	0	2025146..2025610	-	154	150394381	-	SaurJH1_1935	-	helix-turn-helix domain-containing protein
1902	 31.57	0	2025966..2026589	-	207	150394382	-	SaurJH1_1936	-	response regulator receiver
1903	 34.14	0	2026611..2027723	-	370	150394383	-	SaurJH1_1937	-	histidine kinase dimerisation and phosphoacceptor region
1904	 32.85	0	2027886..2028707	+	273	150394384	-	SaurJH1_1938	-	pseudouridine synthase
1905	 34.92	0	2029160..2030545	-	461	150394385	fumC	SaurJH1_1939	-	fumarate hydratase
1906	 28.03	-1	2030741..2031136	-	131	150394386	-	SaurJH1_1940	-	hypothetical protein
1907	 27.45	-1	2031684..2031836	-	50	150394387	-	SaurJH1_1941	-	hypothetical protein
1908	 31.83	0	2031861..2032460	-	199	150394388	-	SaurJH1_1942	-	hypothetical protein
1909	 31.21	0	2032619..2033089	-	156	150394389	-	SaurJH1_1943	-	RNA methyltransferase
1910	 36.97	+1	2033094..2034221	-	375	150394390	-	SaurJH1_1944	-	putative iron-sulfur cluster binding protein
1911	 33.33	0	2034372..2035100	-	242	150394391	-	SaurJH1_1945	-	ABC transporter related
1912	 31.48	0	2035087..2036544	-	485	150394392	-	SaurJH1_1946	-	polar amino acid ABC transporter, inner membrane subunit
1913	 31.26	0	2036802..2037863	-	353	150394393	-	SaurJH1_1947	-	phosphotransferase system EIIC
1914	 30.91	0	2038447..2039766	+	439	150394394	-	SaurJH1_1948	-	transposase IS204/IS1001/IS1096/IS1165 family protein
1915	 30.20	0	2048193..2048639	-	148	150394395	-	SaurJH1_1949	-	ferric-uptake regulator
1916	 30.28	0	2048736..2049686	-	316	150394396	-	SaurJH1_1950	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
1917	 28.51	-1	2049692..2050147	-	151	150394397	-	SaurJH1_1951	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1918	 36.82	+1	2050228..2051517	+	429	150394398	-	SaurJH1_1952	-	glutamate-1-semialdehyde aminotransferase
1919	 31.05	0	2051810..2052904	+	364	150394399	-	SaurJH1_1953	-	hypothetical protein
1920	 32.82	0	2053094..2054830	-	578	150394400	-	SaurJH1_1954	-	ABC transporter related
1921	 32.97	0	2055121..2055663	-	180	150394401	-	SaurJH1_1955	-	hypothetical protein
1922	 34.01	0	2055966..2057003	-	345	150394402	-	SaurJH1_1956	-	A/G-specific adenine glycosylase
1923	 35.07	0	2057155..2058132	+	325	150394403	-	SaurJH1_1957	-	hypothetical protein
1924	 28.79	-1	2058393..2059229	-	278	150394404	-	SaurJH1_1958	-	hypothetical protein
1925	 30.30	0	2059238..2060755	-	505	150394405	-	SaurJH1_1959	-	hypothetical protein
1926	 30.79	0	2060770..2061084	-	104	150394406	-	SaurJH1_1960	-	hypothetical protein
1927	 28.69	-1	2061062..2061880	-	272	150394407	recX	SaurJH1_1961	-	recombination regulator RecX
1928	 30.86	0	2062140..2062949	-	269	150394408	-	SaurJH1_1962	-	glycosyltransferase
1929	 35.08	0	2063289..2063804	-	171	150394409	-	SaurJH1_1963	-	PfpI family intracellular peptidase
1930	 30.86	0	2063935..2064096	-	53	150394410	-	SaurJH1_1964	-	hypothetical protein
1931	 33.59	0	2064320..2065471	+	383	150394411	-	SaurJH1_1965	-	YfkB-like domain-containing protein
1932	 35.97	0	2065731..2066261	-	176	150394412	-	SaurJH1_1966	-	hypothetical protein
1933	 33.65	0	2066351..2067598	-	415	150394413	-	SaurJH1_1967	-	peptidase M29 aminopeptidase II
1934	 31.34	0	2067610..2067810	-	66	150394414	-	SaurJH1_1968	-	hypothetical protein
1935	 34.19	0	2067957..2068421	+	154	150394415	-	SaurJH1_1969	-	protein-tyrosine-phosphatase
1936	 32.97	0	2068428..2068703	+	91	150394416	-	SaurJH1_1970	-	hypothetical protein
1937	 32.35	0	2068981..2070198	+	405	150394417	-	SaurJH1_1971	-	putative ribonuclease BN
1938	 33.97	0	2070311..2070940	-	209	150394418	-	SaurJH1_1972	-	response regulator receiver
1939	 31.90	0	2070930..2071973	-	347	150394419	-	SaurJH1_1973	-	histidine kinase
1940	 30.06	0	2071970..2072671	-	233	150394420	-	SaurJH1_1974	-	hypothetical protein
1941	 26.10	-2	2072686..2073072	-	128	150394421	-	SaurJH1_1975	-	hypothetical protein
1942	 35.70	0	2073289..2074047	-	252	150394422	-	SaurJH1_1976	-	methionine aminopeptidase
1943	 32.22	0	2074519..2075505	+	328	150394423	-	SaurJH1_1977	-	hypothetical protein
1944	 26.09	-2	2075936..2076349	-	137	150394424	-	SaurJH1_1978	-	hypothetical protein
1945	 30.87	0	2076574..2077305	-	243	150394425	-	SaurJH1_1979	-	glutamine amidotransferase
1946	 34.32	0	2077307..2078620	-	437	150394426	-	SaurJH1_1980	-	hypothetical protein
1947	 34.53	0	2078912..2079412	+	166	150394427	-	SaurJH1_1981	-	Ferritin Dps family protein
1948	 31.89	0	2079802..2080356	+	184	150394428	-	SaurJH1_1982	-	exonuclease RNase T and DNA polymerase III
1949	 34.45	0	2080424..2081494	-	356	150394429	-	SaurJH1_1983	-	DNA-directed DNA polymerase
1950	 28.81	-1	2081741..2082271	-	176	150394430	-	SaurJH1_1984	-	hypothetical protein
1951	 32.97	0	2082441..2083802	-	453	150394431	-	SaurJH1_1985	-	RNA methyltransferase
1952	 33.76	0	2083883..2084830	-	315	150394432	-	SaurJH1_1986	-	putative lipid kinase
1953	 23.81	-2	2085412..2085558	-	48	150394433	-	SaurJH1_1987	-	hypothetical protein
1954	 34.87	0	2085598..2087025	-	475	150394434	gatB	SaurJH1_1988	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1955	 34.16	0	2087038..2088495	-	485	150394435	-	SaurJH1_1989	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
1956	 35.97	0	2088497..2088799	-	100	150394436	gatC	SaurJH1_1990	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1957	 35.93	0	2089166..2090704	+	512	150394437	-	SaurJH1_1991	-	high affinity proline permease
1958	 30.67	0	2090793..2091992	-	399	150394438	-	SaurJH1_1992	-	CamS sex pheromone cAM373 family protein
1959	 33.98	0	2092005..2094008	-	667	150394439	-	SaurJH1_1993	-	DNA ligase, NAD-dependent
1960	 34.34	0	2094012..2096204	-	730	150394440	-	SaurJH1_1994	-	ATP-dependent DNA helicase PcrA
1961	 33.33	0	2096201..2096893	-	230	150394441	-	SaurJH1_1995	-	geranylgeranylglyceryl phosphate synthase-like protein
1962	 32.01	0	2097065..2097367	-	100	150394442	-	SaurJH1_1996	-	hypothetical protein
1963	 35.49	0	2097476..2098771	-	431	150394443	-	SaurJH1_1997	-	adenylosuccinate lyase
1964	 31.36	0	2099631..2100797	+	388	150394444	-	SaurJH1_1998	-	staphopain
1965	 25.99	-2	2100828..2101154	+	108	150394445	-	SaurJH1_1999	-	hypothetical protein
1966	 33.91	0	2101446..2101619	-	57	150394446	-	SaurJH1_2000	-	hypothetical protein
1967	 32.34	0	2101600..2102202	-	200	150394447	-	SaurJH1_2001	-	hypothetical protein
1968	 34.06	0	2102473..2103294	-	273	150394448	nadE	SaurJH1_2002	-	NAD synthetase
1969	 33.20	0	2103287..2104756	-	489	150394449	-	SaurJH1_2003	-	nicotinate phosphoribosyltransferase
1970	 33.52	0	2104940..2106016	+	358	150394450	-	SaurJH1_2004	-	nitric-oxide synthase
1971	 32.96	0	2106036..2106830	+	264	150394451	-	SaurJH1_2005	-	prephenate dehydratase
1972	 34.36	0	2107020..2108582	-	520	150394452	-	SaurJH1_2006	-	anion transporter
1973	 32.88	0	2108787..2109884	-	365	150394453	-	SaurJH1_2007	-	parallel beta-helix repeat-containing protein
1974	 34.40	0	2110253..2110813	+	186	150394454	-	SaurJH1_2008	-	isochorismatase hydrolase
1975	 34.09	0	2110866..2111795	+	309	150394455	-	SaurJH1_2009	-	putative manganese-dependent inorganic pyrophosphatase
1976	 33.33	0	2112213..2113592	+	459	150394456	-	SaurJH1_2010	-	aldehyde dehydrogenase
1977	 32.85	0	2113712..2114740	-	342	150394457	-	SaurJH1_2011	-	hypothetical protein
1978	 33.33	0	2115010..2115411	+	133	150394458	-	SaurJH1_2012	-	hypothetical protein
1979	 24.14	-2	2115984..2116157	-	57	150394459	-	SaurJH1_2014	-	hypothetical protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.