IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1800	 34.28	0	1905380..1906012	+	210	150394280	-	SaurJH1_1824	-	acetoin dehydrogenase-like protein
1801	 34.70	0	1906037..1907206	+	389	150394281	-	SaurJH1_1825	-	histone deacetylase superfamily protein
1802	 33.03	0	1907304..1908293	-	329	150394282	-	SaurJH1_1826	-	catabolite control protein A
1803	 33.97	0	1908833..1909924	-	363	150394283	-	SaurJH1_1827	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
1804	 33.26	0	1910618..1911976	-	452	150394284	-	SaurJH1_1828	-	hypothetical protein
1805	 33.54	0	1912050..1912541	-	163	150394285	-	SaurJH1_1829	-	hypothetical protein
1806	 31.28	0	1912615..1913928	-	437	150394286	murC	SaurJH1_1830	-	UDP-N-acetylmuramate--L-alanine ligase
1807	 33.80	0	1913952..1917776	-	1274	150394287	-	SaurJH1_1831	-	cell division protein FtsK/SpoIIIE
1808	 31.32	0	1917797..1918393	-	198	150394288	-	SaurJH1_1832	-	tRNA-binding domain-containing protein
1809	 30.89	0	1918422..1919279	-	285	150394289	-	SaurJH1_1833	-	hypothetical protein
1810	 33.33	0	1919379..1919690	-	103	150394290	-	SaurJH1_1834	-	thioredoxin domain-containing protein
1811	 33.98	0	1919755..1920831	-	358	150394291	-	SaurJH1_1835	-	glutamyl aminopeptidase
1812	 28.25	-1	1920915..1921229	+	104	150394292	-	SaurJH1_1836	-	hypothetical protein
1813	 34.52	0	1921354..1922196	-	280	150394293	-	SaurJH1_1837	-	beta-lactamase domain-containing protein
1814	 31.78	0	1922667..1923311	-	214	150394294	-	SaurJH1_1838	-	tRNA (guanine-N(7)-)-methyltransferase
1815	 34.47	0	1923326..1924117	-	263	150394295	-	SaurJH1_1839	-	hypothetical protein
1816	 32.74	0	1924667..1925515	-	282	150394296	-	SaurJH1_1840	-	D-alanine aminotransferase
1817	 34.61	0	1925519..1926928	-	469	150394297	-	SaurJH1_1841	-	dipeptidase PepV
1818	 30.02	0	1927372..1927794	-	140	150394298	-	SaurJH1_1842	-	hypothetical protein
1819	 29.89	0	1927811..1928506	-	231	150394299	-	SaurJH1_1843	-	pseudouridine synthase
1820	 32.13	0	1928503..1930164	-	553	150394300	-	SaurJH1_1844	-	polysaccharide biosynthesis protein
1821	 35.46	0	1930571..1931839	+	422	150394301	-	SaurJH1_1845	-	hypothetical protein
1822	 34.80	0	1931956..1938516	-	2186	150394302	-	SaurJH1_1846	-	cell wall anchor domain-containing protein
1823	 33.65	0	1938842..1939153	-	103	150394303	-	SaurJH1_1847	-	rhodanese domain-containing protein
1824	 34.41	0	1939175..1941592	-	805	150394304	leuS	SaurJH1_1848	-	leucyl-tRNA synthetase
1825	 35.19	0	1941880..1943061	-	393	150394305	-	SaurJH1_1849	-	major facilitator transporter
1826	 36.90	+1	1943171..1944124	+	317	150394306	-	SaurJH1_1850	-	hypothetical protein
1827	 32.80	0	1944121..1944684	+	187	150394307	-	SaurJH1_1851	-	hypothetical protein
1828	 31.74	0	1944807..1945307	-	166	150394308	-	SaurJH1_1852	-	accessory regulator A-like protein
1829	 32.37	0	1945780..1946607	-	275	150394309	-	SaurJH1_1853	-	alpha/beta hydrolase fold
1830	 32.83	0	1946840..1947841	+	333	150394310	-	SaurJH1_1854	-	proline dehydrogenase
1831	 33.12	0	1947963..1948427	-	154	150394311	-	SaurJH1_1855	-	6,7-dimethyl-8-ribityllumazine synthase
1832	 33.84	0	1948440..1949621	-	393	150394312	-	SaurJH1_1856	-	riboflavin biosynthesis protein
1833	 33.02	0	1949632..1950264	-	210	150394313	-	SaurJH1_1857	-	riboflavin synthase subunit alpha
1834	 34.77	0	1950271..1951314	-	347	150394314	-	SaurJH1_1858	-	riboflavin biosynthesis protein RibD
1835	 31.34	0	1951795..1953297	-	500	150394315	-	SaurJH1_1859	-	hypothetical protein
1836	 31.43	0	1953820..1954134	+	104	150394316	-	SaurJH1_1860	-	regulatory protein ArsR
1837	 32.10	0	1954134..1955426	+	430	150394317	-	SaurJH1_1861	-	arsenical pump membrane protein
1838	 30.88	0	1955513..1956367	-	284	150394318	-	SaurJH1_1862	-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
1839	 28.89	-1	1956643..1956867	-	74	150394319	-	SaurJH1_1863	-	hypothetical protein
1840	 27.50	-1	1956988..1957536	+	182	150394320	-	SaurJH1_1864	-	RNA polymerase sigma-70
1841	 29.73	0	1957649..1958092	+	147	150394321	-	SaurJH1_1865	-	hypothetical protein
1842	 26.80	-1	1958079..1958522	-	147	150394322	-	SaurJH1_1866	-	hypothetical protein
1843	 28.46	-1	1958818..1959453	+	211	150394323	-	SaurJH1_1867	-	abortive infection protein
1844	 34.31	0	1959893..1960606	-	237	150394324	-	SaurJH1_1868	-	putative translaldolase
1845	 25.08	-2	1960866..1961168	+	100	150394325	-	SaurJH1_1869	-	hypothetical protein
1846	 34.01	0	1961346..1961789	+	147	150394326	-	SaurJH1_1870	-	CrcB protein
1847	 31.92	0	1961786..1962139	+	117	150394327	-	SaurJH1_1871	-	camphor resistance CrcB protein
1848	 29.39	-1	1963390..1964073	+	227	150394328	-	SaurJH1_1874	-	transposase IS4 family protein
1849	 34.53	0	1964136..1964969	-	277	150394329	-	SaurJH1_1875	-	2,5-didehydrogluconate reductase
1850	 30.47	0	1965181..1966089	-	302	150394330	-	SaurJH1_1876	-	hypothetical protein
1851	 37.59	+1	1966211..1967407	-	398	150394331	-	SaurJH1_1877	-	S-adenosylmethionine synthetase
1852	 34.97	0	1967779..1969371	+	530	150394332	-	SaurJH1_1878	-	phosphoenolpyruvate carboxykinase
1853	 38.52	+1	1969749..1970519	-	256	150394333	-	SaurJH1_1879	-	hypothetical protein
1854	 35.21	0	1970500..1970979	-	159	150394334	-	SaurJH1_1880	-	hypothetical protein
1855	 37.98	+1	1971039..1971296	+	85	150394335	-	SaurJH1_1881	-	hypothetical protein
1856	 36.33	0	1971293..1972294	-	333	150394336	-	SaurJH1_1882	-	o-succinylbenzoic acid synthetase
1857	 36.11	0	1972299..1973777	-	492	150394337	-	SaurJH1_1883	-	O-succinylbenzoate-CoA ligase
1858	 29.19	-1	1973936..1974418	-	160	150394338	-	SaurJH1_1884	-	hypothetical protein
1859	 32.41	0	1974695..1975345	+	216	150394339	-	SaurJH1_1885	-	Excalibur domain-containing protein
1860	 35.54	0	1975426..1976421	+	331	150394340	-	SaurJH1_1886	-	hypothetical protein
1861	 32.06	0	1976496..1977122	+	208	150394341	-	SaurJH1_1887	-	hypothetical protein
1862	 30.99	0	1977163..1977504	+	113	150394342	-	SaurJH1_1888	-	hypothetical protein
1863	 32.81	0	1977605..1978177	+	190	150394343	-	SaurJH1_1889	-	hypothetical protein
1864	 28.78	-1	1980927..1982156	-	409	150394344	-	SaurJH1_1894	-	restriction modification system DNA specificity subunit
1865	 38.66	+1	1982149..1983705	-	518	150394345	-	SaurJH1_1895	-	type I restriction-modification system, M subunit
1866	 33.61	0	1984066..1984785	-	239	150394346	-	SaurJH1_1896	-	peptidase S1 and S6 chymotrypsin/Hap
1867	 32.92	0	1984906..1985625	-	239	150394347	-	SaurJH1_1897	-	peptidase S1 and S6 chymotrypsin/Hap
1868	 32.42	0	1985683..1986447	-	254	150394348	-	SaurJH1_1898	-	peptidase S1 and S6 chymotrypsin/Hap
1869	 32.34	0	1986530..1987237	-	235	150394349	-	SaurJH1_1899	-	peptidase S1 and S6 chymotrypsin/Hap
1870	 28.52	-1	1988201..1988782	+	193	150394350	-	SaurJH1_1900	-	putative beta-lactamase
1871	 26.16	-2	1989729..1990202	+	157	150394351	-	SaurJH1_1902	-	hypothetical protein
1872	 27.53	-1	1990207..1990998	+	263	150394352	-	SaurJH1_1903	-	hypothetical protein
1873	 31.71	0	1991368..1992351	-	327	150394353	-	SaurJH1_1904	-	beta-channel forming cytolysin
1874	 32.80	0	1992353..1993288	-	311	150394354	-	SaurJH1_1905	-	beta-channel forming cytolysin
1875	 24.97	-2	1994652..1995440	+	262	150394355	-	SaurJH1_1907	-	hypothetical protein
1876	 29.49	-1	1996274..1996768	+	164	150394356	-	SaurJH1_1909	-	hypothetical protein
1877	 27.85	-1	1996846..1997082	+	78	150394357	-	SaurJH1_1910	-	hypothetical protein
1878	 27.03	-1	1997103..1997879	+	258	150394358	-	SaurJH1_1911	-	hypothetical protein
1879	 27.28	-1	1998431..1999207	-	258	150394359	-	SaurJH1_1912	-	toxin beta-grasp domain-containing protein
1880	 25.26	-2	1999490..2000245	-	251	150394360	-	SaurJH1_1913	-	toxin OB-fold domain-containing protein
1881	 25.93	-2	2001209..2001937	-	242	150394361	-	SaurJH1_1915	-	toxin beta-grasp domain-containing protein
1882	 28.47	-1	2001972..2002691	-	239	150394362	-	SaurJH1_1916	-	toxin beta-grasp domain-containing protein
1883	 25.75	-2	2002972..2003736	-	254	150394363	-	SaurJH1_1917	-	toxin OB-fold domain-containing protein
1884	 33.69	0	2005114..2005668	-	184	150394364	-	SaurJH1_1918	-	hypothetical protein
1885	 34.98	0	2005991..2007391	-	466	150394365	-	SaurJH1_1919	-	protoporphyrinogen oxidase
1886	 33.33	0	2007415..2008338	-	307	150394366	hemH	SaurJH1_1920	-	ferrochelatase
1887	 34.78	0	2008396..2009433	-	345	150394367	hemE	SaurJH1_1921	-	uroporphyrinogen decarboxylase
1888	 31.35	0	2009696..2010199	+	167	150394368	-	SaurJH1_1922	-	hypothetical protein
1889	 29.98	0	2010323..2011546	-	407	150394369	-	SaurJH1_1923	-	ABC transporter EcsB
1890	 34.68	0	2011539..2012279	-	246	150394370	-	SaurJH1_1924	-	ABC transporter related
1891	 30.50	0	2012413..2012835	+	140	150394371	-	SaurJH1_1925	-	histidine triad (HIT) protein
1892	 36.61	+1	2012977..2013342	+	121	150394372	-	SaurJH1_1926	-	hypothetical protein
1893	 24.19	-2	2014077..2014634	+	185	150394373	-	SaurJH1_1927	-	hypothetical protein
1894	 30.84	0	2014839..2015801	+	320	150394374	-	SaurJH1_1928	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1895	 33.65	0	2015922..2016863	-	313	150394375	-	SaurJH1_1929	-	3'-5' exoribonuclease YhaM
1896	 30.81	0	2016860..2019796	-	978	150394376	-	SaurJH1_1930	-	hypothetical protein
1897	 29.91	0	2019786..2020982	-	398	150394377	-	SaurJH1_1931	-	metallophosphoesterase
1898	 31.88	0	2021910..2022254	-	114	150394378	-	SaurJH1_1932	-	hypothetical protein
1899	 30.04	0	2022323..2023447	-	374	150394379	-	SaurJH1_1933	-	hypothetical protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.