IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1765	 37.25	+1	1860666..1861634	-	322	150394245	-	SaurJH1_1789	-	6-phosphofructokinase
1766	 34.29	0	1861903..1862847	-	314	150394246	-	SaurJH1_1790	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1767	 34.38	0	1862847..1863704	-	285	150394247	-	SaurJH1_1791	-	acetyl-CoA carboxylase subunit beta
1768	 35.77	0	1863899..1865128	-	409	150394248	-	SaurJH1_1792	-	malate dehydrogenase
1769	 31.61	0	1865578..1868775	-	1065	150394249	-	SaurJH1_1793	-	DNA polymerase III, alpha subunit
1770	 35.35	0	1868796..1869737	-	313	150394250	-	SaurJH1_1794	-	phosphoesterase domain-containing protein
1771	 33.64	0	1870049..1871347	-	432	150394251	-	SaurJH1_1795	-	DRTGG domain-containing protein
1772	 33.33	0	1871552..1871965	+	137	150394252	-	SaurJH1_1796	-	UspA domain-containing protein
1773	 33.62	0	1872270..1872959	-	229	150394253	-	SaurJH1_1797	-	beta-lactamase domain-containing protein
1774	 33.05	0	1873134..1874189	+	351	150394254	-	SaurJH1_1798	-	peptidase M24
1775	 29.29	-1	1874283..1874381	-	32	150394255	-	SaurJH1_1799	-	hypothetical protein
1776	 36.10	0	1874505..1875623	-	372	150394256	-	SaurJH1_1800	-	alanine dehydrogenase
1777	 35.53	0	1875764..1876264	+	166	150394257	-	SaurJH1_1801	-	UspA domain-containing protein
1778	 35.08	0	1876510..1877712	-	400	150394258	-	SaurJH1_1802	-	acetate kinase
1779	 31.86	0	1877800..1878747	-	315	150394259	-	SaurJH1_1803	-	hypothetical protein
1780	 34.95	0	1878870..1879364	-	164	150394260	-	SaurJH1_1804	-	redoxin domain-containing protein
1781	 32.30	0	1879462..1880232	-	256	150394261	-	SaurJH1_1805	-	hypothetical protein
1782	 33.01	0	1880276..1881499	-	407	150394262	-	SaurJH1_1806	-	thiamine biosynthesis/tRNA modification protein ThiI
1783	 31.53	0	1881499..1882665	-	388	150394263	-	SaurJH1_1807	-	aminotransferase class V
1784	 31.09	0	1883011..1884705	-	564	150394264	-	SaurJH1_1808	-	septation ring formation regulator EzrA
1785	 35.91	0	1884842..1885306	+	154	150394265	-	SaurJH1_1809	-	GAF domain-containing protein
1786	 35.66	0	1885550..1886152	+	200	150394266	rpsD	SaurJH1_1810	-	30S ribosomal protein S4
1787	 32.12	0	1886368..1887111	-	247	150394267	-	SaurJH1_1811	-	glycerophosphoryl diester phosphodiesterase
1788	 34.68	0	1887191..1887637	+	148	150394268	-	SaurJH1_1812	-	OsmC family protein
1789	 34.28	0	1887752..1888909	+	385	150394269	-	SaurJH1_1813	-	aminotransferase class V
1790	 34.45	0	1888896..1890500	+	534	150394270	-	SaurJH1_1814	-	D-3-phosphoglycerate dehydrogenase
1791	 31.65	0	1890650..1891780	-	376	150394271	-	SaurJH1_1815	-	hypothetical protein
1792	 34.70	0	1891887..1893353	-	488	150394272	-	SaurJH1_1816	-	PTS system, N-acetylglucosamine-specific IIBC subunit
1793	 31.07	0	1893481..1894098	-	205	150394273	-	SaurJH1_1817	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1794	 34.27	0	1894270..1895544	+	424	150394274	-	SaurJH1_1818	-	2-alkenal reductase
1795	 33.41	0	1895638..1896900	-	420	150394275	-	SaurJH1_1819	-	tyrosyl-tRNA synthetase
1796	 30.13	0	1897282..1898187	+	301	150394276	-	SaurJH1_1820	-	glycosyl transferase family protein
1797	 33.74	0	1898390..1901065	-	891	150394277	-	SaurJH1_1821	-	cell wall anchor domain-containing protein
1798	 36.27	0	1901398..1903065	-	555	150394278	-	SaurJH1_1822	-	formate--tetrahydrofolate ligase
1799	 36.32	0	1903505..1905211	-	568	150394279	-	SaurJH1_1823	-	acetyl-CoA synthetase
1800	 34.28	0	1905380..1906012	+	210	150394280	-	SaurJH1_1824	-	acetoin dehydrogenase-like protein
1801	 34.70	0	1906037..1907206	+	389	150394281	-	SaurJH1_1825	-	histone deacetylase superfamily protein
1802	 33.03	0	1907304..1908293	-	329	150394282	-	SaurJH1_1826	-	catabolite control protein A
1803	 33.97	0	1908833..1909924	-	363	150394283	-	SaurJH1_1827	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
1804	 33.26	0	1910618..1911976	-	452	150394284	-	SaurJH1_1828	-	hypothetical protein
1805	 33.54	0	1912050..1912541	-	163	150394285	-	SaurJH1_1829	-	hypothetical protein
1806	 31.28	0	1912615..1913928	-	437	150394286	murC	SaurJH1_1830	-	UDP-N-acetylmuramate--L-alanine ligase
1807	 33.80	0	1913952..1917776	-	1274	150394287	-	SaurJH1_1831	-	cell division protein FtsK/SpoIIIE
1808	 31.32	0	1917797..1918393	-	198	150394288	-	SaurJH1_1832	-	tRNA-binding domain-containing protein
1809	 30.89	0	1918422..1919279	-	285	150394289	-	SaurJH1_1833	-	hypothetical protein
1810	 33.33	0	1919379..1919690	-	103	150394290	-	SaurJH1_1834	-	thioredoxin domain-containing protein
1811	 33.98	0	1919755..1920831	-	358	150394291	-	SaurJH1_1835	-	glutamyl aminopeptidase
1812	 28.25	-1	1920915..1921229	+	104	150394292	-	SaurJH1_1836	-	hypothetical protein
1813	 34.52	0	1921354..1922196	-	280	150394293	-	SaurJH1_1837	-	beta-lactamase domain-containing protein
1814	 31.78	0	1922667..1923311	-	214	150394294	-	SaurJH1_1838	-	tRNA (guanine-N(7)-)-methyltransferase
1815	 34.47	0	1923326..1924117	-	263	150394295	-	SaurJH1_1839	-	hypothetical protein
1816	 32.74	0	1924667..1925515	-	282	150394296	-	SaurJH1_1840	-	D-alanine aminotransferase
1817	 34.61	0	1925519..1926928	-	469	150394297	-	SaurJH1_1841	-	dipeptidase PepV
1818	 30.02	0	1927372..1927794	-	140	150394298	-	SaurJH1_1842	-	hypothetical protein
1819	 29.89	0	1927811..1928506	-	231	150394299	-	SaurJH1_1843	-	pseudouridine synthase
1820	 32.13	0	1928503..1930164	-	553	150394300	-	SaurJH1_1844	-	polysaccharide biosynthesis protein
1821	 35.46	0	1930571..1931839	+	422	150394301	-	SaurJH1_1845	-	hypothetical protein
1822	 34.80	0	1931956..1938516	-	2186	150394302	-	SaurJH1_1846	-	cell wall anchor domain-containing protein
1823	 33.65	0	1938842..1939153	-	103	150394303	-	SaurJH1_1847	-	rhodanese domain-containing protein
1824	 34.41	0	1939175..1941592	-	805	150394304	leuS	SaurJH1_1848	-	leucyl-tRNA synthetase
1825	 35.19	0	1941880..1943061	-	393	150394305	-	SaurJH1_1849	-	major facilitator transporter
1826	 36.90	+1	1943171..1944124	+	317	150394306	-	SaurJH1_1850	-	hypothetical protein
1827	 32.80	0	1944121..1944684	+	187	150394307	-	SaurJH1_1851	-	hypothetical protein
1828	 31.74	0	1944807..1945307	-	166	150394308	-	SaurJH1_1852	-	accessory regulator A-like protein
1829	 32.37	0	1945780..1946607	-	275	150394309	-	SaurJH1_1853	-	alpha/beta hydrolase fold
1830	 32.83	0	1946840..1947841	+	333	150394310	-	SaurJH1_1854	-	proline dehydrogenase
1831	 33.12	0	1947963..1948427	-	154	150394311	-	SaurJH1_1855	-	6,7-dimethyl-8-ribityllumazine synthase
1832	 33.84	0	1948440..1949621	-	393	150394312	-	SaurJH1_1856	-	riboflavin biosynthesis protein
1833	 33.02	0	1949632..1950264	-	210	150394313	-	SaurJH1_1857	-	riboflavin synthase subunit alpha
1834	 34.77	0	1950271..1951314	-	347	150394314	-	SaurJH1_1858	-	riboflavin biosynthesis protein RibD
1835	 31.34	0	1951795..1953297	-	500	150394315	-	SaurJH1_1859	-	hypothetical protein
1836	 31.43	0	1953820..1954134	+	104	150394316	-	SaurJH1_1860	-	regulatory protein ArsR
1837	 32.10	0	1954134..1955426	+	430	150394317	-	SaurJH1_1861	-	arsenical pump membrane protein
1838	 30.88	0	1955513..1956367	-	284	150394318	-	SaurJH1_1862	-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
1839	 28.89	-1	1956643..1956867	-	74	150394319	-	SaurJH1_1863	-	hypothetical protein
1840	 27.50	-1	1956988..1957536	+	182	150394320	-	SaurJH1_1864	-	RNA polymerase sigma-70
1841	 29.73	0	1957649..1958092	+	147	150394321	-	SaurJH1_1865	-	hypothetical protein
1842	 26.80	-1	1958079..1958522	-	147	150394322	-	SaurJH1_1866	-	hypothetical protein
1843	 28.46	-1	1958818..1959453	+	211	150394323	-	SaurJH1_1867	-	abortive infection protein
1844	 34.31	0	1959893..1960606	-	237	150394324	-	SaurJH1_1868	-	putative translaldolase
1845	 25.08	-2	1960866..1961168	+	100	150394325	-	SaurJH1_1869	-	hypothetical protein
1846	 34.01	0	1961346..1961789	+	147	150394326	-	SaurJH1_1870	-	CrcB protein
1847	 31.92	0	1961786..1962139	+	117	150394327	-	SaurJH1_1871	-	camphor resistance CrcB protein
1848	 29.39	-1	1963390..1964073	+	227	150394328	-	SaurJH1_1874	-	transposase IS4 family protein
1849	 34.53	0	1964136..1964969	-	277	150394329	-	SaurJH1_1875	-	2,5-didehydrogluconate reductase
1850	 30.47	0	1965181..1966089	-	302	150394330	-	SaurJH1_1876	-	hypothetical protein
1851	 37.59	+1	1966211..1967407	-	398	150394331	-	SaurJH1_1877	-	S-adenosylmethionine synthetase
1852	 34.97	0	1967779..1969371	+	530	150394332	-	SaurJH1_1878	-	phosphoenolpyruvate carboxykinase
1853	 38.52	+1	1969749..1970519	-	256	150394333	-	SaurJH1_1879	-	hypothetical protein
1854	 35.21	0	1970500..1970979	-	159	150394334	-	SaurJH1_1880	-	hypothetical protein
1855	 37.98	+1	1971039..1971296	+	85	150394335	-	SaurJH1_1881	-	hypothetical protein
1856	 36.33	0	1971293..1972294	-	333	150394336	-	SaurJH1_1882	-	o-succinylbenzoic acid synthetase
1857	 36.11	0	1972299..1973777	-	492	150394337	-	SaurJH1_1883	-	O-succinylbenzoate-CoA ligase
1858	 29.19	-1	1973936..1974418	-	160	150394338	-	SaurJH1_1884	-	hypothetical protein
1859	 32.41	0	1974695..1975345	+	216	150394339	-	SaurJH1_1885	-	Excalibur domain-containing protein
1860	 35.54	0	1975426..1976421	+	331	150394340	-	SaurJH1_1886	-	hypothetical protein
1861	 32.06	0	1976496..1977122	+	208	150394341	-	SaurJH1_1887	-	hypothetical protein
1862	 30.99	0	1977163..1977504	+	113	150394342	-	SaurJH1_1888	-	hypothetical protein
1863	 32.81	0	1977605..1978177	+	190	150394343	-	SaurJH1_1889	-	hypothetical protein
1864	 28.78	-1	1980927..1982156	-	409	150394344	-	SaurJH1_1894	-	restriction modification system DNA specificity subunit
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.