IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1708	 33.53	0	1799920..1800945	-	341	150394188	-	SaurJH1_1730	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1709	 37.11	+1	1800947..1801951	-	334	150394189	ruvB	SaurJH1_1731	-	Holliday junction DNA helicase B
1710	 33.50	0	1801983..1802585	-	200	150394190	-	SaurJH1_1732	-	Holliday junction DNA helicase RuvA
1711	 29.19	-1	1802599..1803057	-	152	150394191	-	SaurJH1_1733	-	hypothetical protein
1712	 36.50	+1	1803067..1804359	-	430	150394192	obgE	SaurJH1_1734	-	GTPase ObgE
1713	 38.25	+1	1804713..1804997	-	94	150394193	rpmA	SaurJH1_1735	-	50S ribosomal protein L27
1714	 33.96	0	1805009..1805329	-	106	150394194	-	SaurJH1_1736	-	hypothetical protein
1715	 33.66	0	1805335..1805643	-	102	150394195	rplU	SaurJH1_1737	-	50S ribosomal protein L21
1716	 28.63	-1	1805879..1806409	-	176	150394196	-	SaurJH1_1738	-	rod shape-determining protein MreD
1717	 30.84	0	1806409..1807251	-	280	150394197	-	SaurJH1_1739	-	rod shape-determining protein MreC
1718	 38.33	+1	1807450..1807569	-	39	150394198	-	SaurJH1_1740	-	hypothetical protein
1719	 28.90	-1	1807643..1808116	-	157	150394199	-	SaurJH1_1741	-	hypothetical protein
1720	 28.24	-1	1808258..1808473	+	71	150394200	-	SaurJH1_1742	-	hypothetical protein
1721	 36.14	0	1808590..1808838	-	82	150394201	-	SaurJH1_1743	-	hypothetical protein
1722	 34.39	0	1809323..1809985	-	220	150394202	-	SaurJH1_1746	-	methyltransferase type 12
1723	 32.51	0	1810494..1811225	+	243	150394203	-	SaurJH1_1747	-	rRNA (adenine-N(6)-)-methyltransferase
1724	 36.40	+1	1811351..1812133	-	260	150394204	-	SaurJH1_1748	-	3'-adenylyltransferase
1725	 29.89	0	1812284..1812661	-	125	150394205	-	SaurJH1_1749	-	transposase C
1726	 33.86	0	1812668..1814560	-	630	150394206	-	SaurJH1_1750	-	phage integrase family protein
1727	 32.14	0	1814557..1815642	-	361	150394207	-	SaurJH1_1751	-	phage integrase family protein
1728	 31.35	0	1815761..1816315	-	184	150394208	-	SaurJH1_1752	-	DNA repair protein RadC
1729	 28.53	-1	1816312..1817019	-	235	150394209	-	SaurJH1_1753	-	peptidase A24A domain-containing protein
1730	 32.78	0	1817289..1818560	-	423	150394210	-	SaurJH1_1754	-	FolC bifunctional protein
1731	 34.44	0	1818573..1821203	-	876	150394211	valS	SaurJH1_1755	-	valyl-tRNA synthetase
1732	 32.98	0	1821606..1822166	+	186	150394212	-	SaurJH1_1756	-	DNA-3-methyladenine glycosylase I
1733	 29.98	0	1822389..1823462	-	357	150394213	-	SaurJH1_1757	-	putative ammonia monooxygenase
1734	 40.20	+2	1823496..1823597	-	33	150394214	-	SaurJH1_1758	-	hypothetical protein
1735	 36.75	+1	1823658..1824944	-	428	150394215	-	SaurJH1_1759	-	glutamate-1-semialdehyde aminotransferase
1736	 35.59	0	1824992..1825966	-	324	150394216	-	SaurJH1_1760	-	delta-aminolevulinic acid dehydratase
1737	 30.49	0	1825969..1826637	-	222	150394217	-	SaurJH1_1761	-	uroporphyrinogen III synthase
1738	 34.41	0	1826659..1827585	-	308	150394218	hemC	SaurJH1_1762	-	porphobilinogen deaminase
1739	 28.31	-1	1827627..1828442	-	271	150394219	-	SaurJH1_1763	-	cytochrome c assembly protein
1740	 33.78	0	1828464..1829810	-	448	150394220	hemA	SaurJH1_1764	-	glutamyl-tRNA reductase
1741	 28.93	-1	1830027..1830617	-	196	150394221	-	SaurJH1_1765	-	GTPase EngB
1742	 34.05	0	1830771..1832033	-	420	150394222	clpX	SaurJH1_1766	-	ATP-dependent protease ATP-binding subunit
1743	 33.64	0	1832184..1833485	-	433	150394223	tig	SaurJH1_1767	-	trigger factor
1744	 29.25	-1	1833648..1834577	-	309	150394224	-	SaurJH1_1768	-	hypothetical protein
1745	 33.33	0	1834596..1835204	-	202	150394225	-	SaurJH1_1769	-	NUDIX hydrolase
1746	 36.41	+1	1835346..1835702	-	118	150394226	rplT	SaurJH1_1770	-	50S ribosomal protein L20
1747	 34.83	0	1835749..1835949	-	66	150394227	rpmI	SaurJH1_1771	-	50S ribosomal protein L35
1748	 34.99	0	1835978..1836580	-	200	150394228	infC	SaurJH1_1772	-	translation initiation factor IF-3
1749	 34.34	0	1836734..1838227	-	497	150394229	-	SaurJH1_1773	-	amino acid permease-associated region
1750	 35.19	0	1838653..1840590	-	645	150394230	-	SaurJH1_1774	-	threonyl-tRNA synthetase
1751	 34.42	0	1841003..1841923	-	306	150394231	-	SaurJH1_1775	-	primosomal protein DnaI
1752	 32.76	0	1841923..1843323	-	466	150394232	-	SaurJH1_1776	-	replication initiation and membrane attachment family protein
1753	 35.46	0	1843324..1843794	-	156	150394233	-	SaurJH1_1777	-	transcriptional regulator NrdR
1754	 32.65	0	1844005..1845030	-	341	150394234	-	SaurJH1_1778	-	glyceraldehyde 3-phosphate dehydrogenase 2
1755	 34.46	0	1845200..1845823	-	207	150394235	-	SaurJH1_1779	-	dephospho-CoA kinase
1756	 32.30	0	1845839..1846711	-	290	150394236	-	SaurJH1_1780	-	formamidopyrimidine-DNA glycosylase
1757	 32.12	0	1846727..1849357	-	876	150394237	-	SaurJH1_1781	-	DNA polymerase I
1758	 28.49	-1	1849651..1851138	-	495	150394238	-	SaurJH1_1782	-	hypothetical protein
1759	 31.11	0	1851637..1853301	-	554	150394239	-	SaurJH1_1783	-	PAS sensor protein
1760	 34.04	0	1853298..1854002	-	234	150394240	-	SaurJH1_1784	-	alkaline phosphatase synthesis transcriptional regulatory protein
1761	 34.99	0	1854392..1855660	-	422	150394241	-	SaurJH1_1785	-	isocitrate dehydrogenase
1762	 36.19	0	1855709..1856830	-	373	150394242	-	SaurJH1_1786	-	methylcitrate synthase
1763	 34.65	0	1857178..1858539	+	453	150394243	-	SaurJH1_1787	-	amino acid permease-associated region
1764	 34.53	0	1858887..1860644	-	585	150394244	-	SaurJH1_1788	-	pyruvate kinase
1765	 37.25	+1	1860666..1861634	-	322	150394245	-	SaurJH1_1789	-	6-phosphofructokinase
1766	 34.29	0	1861903..1862847	-	314	150394246	-	SaurJH1_1790	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1767	 34.38	0	1862847..1863704	-	285	150394247	-	SaurJH1_1791	-	acetyl-CoA carboxylase subunit beta
1768	 35.77	0	1863899..1865128	-	409	150394248	-	SaurJH1_1792	-	malate dehydrogenase
1769	 31.61	0	1865578..1868775	-	1065	150394249	-	SaurJH1_1793	-	DNA polymerase III, alpha subunit
1770	 35.35	0	1868796..1869737	-	313	150394250	-	SaurJH1_1794	-	phosphoesterase domain-containing protein
1771	 33.64	0	1870049..1871347	-	432	150394251	-	SaurJH1_1795	-	DRTGG domain-containing protein
1772	 33.33	0	1871552..1871965	+	137	150394252	-	SaurJH1_1796	-	UspA domain-containing protein
1773	 33.62	0	1872270..1872959	-	229	150394253	-	SaurJH1_1797	-	beta-lactamase domain-containing protein
1774	 33.05	0	1873134..1874189	+	351	150394254	-	SaurJH1_1798	-	peptidase M24
1775	 29.29	-1	1874283..1874381	-	32	150394255	-	SaurJH1_1799	-	hypothetical protein
1776	 36.10	0	1874505..1875623	-	372	150394256	-	SaurJH1_1800	-	alanine dehydrogenase
1777	 35.53	0	1875764..1876264	+	166	150394257	-	SaurJH1_1801	-	UspA domain-containing protein
1778	 35.08	0	1876510..1877712	-	400	150394258	-	SaurJH1_1802	-	acetate kinase
1779	 31.86	0	1877800..1878747	-	315	150394259	-	SaurJH1_1803	-	hypothetical protein
1780	 34.95	0	1878870..1879364	-	164	150394260	-	SaurJH1_1804	-	redoxin domain-containing protein
1781	 32.30	0	1879462..1880232	-	256	150394261	-	SaurJH1_1805	-	hypothetical protein
1782	 33.01	0	1880276..1881499	-	407	150394262	-	SaurJH1_1806	-	thiamine biosynthesis/tRNA modification protein ThiI
1783	 31.53	0	1881499..1882665	-	388	150394263	-	SaurJH1_1807	-	aminotransferase class V
1784	 31.09	0	1883011..1884705	-	564	150394264	-	SaurJH1_1808	-	septation ring formation regulator EzrA
1785	 35.91	0	1884842..1885306	+	154	150394265	-	SaurJH1_1809	-	GAF domain-containing protein
1786	 35.66	0	1885550..1886152	+	200	150394266	rpsD	SaurJH1_1810	-	30S ribosomal protein S4
1787	 32.12	0	1886368..1887111	-	247	150394267	-	SaurJH1_1811	-	glycerophosphoryl diester phosphodiesterase
1788	 34.68	0	1887191..1887637	+	148	150394268	-	SaurJH1_1812	-	OsmC family protein
1789	 34.28	0	1887752..1888909	+	385	150394269	-	SaurJH1_1813	-	aminotransferase class V
1790	 34.45	0	1888896..1890500	+	534	150394270	-	SaurJH1_1814	-	D-3-phosphoglycerate dehydrogenase
1791	 31.65	0	1890650..1891780	-	376	150394271	-	SaurJH1_1815	-	hypothetical protein
1792	 34.70	0	1891887..1893353	-	488	150394272	-	SaurJH1_1816	-	PTS system, N-acetylglucosamine-specific IIBC subunit
1793	 31.07	0	1893481..1894098	-	205	150394273	-	SaurJH1_1817	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1794	 34.27	0	1894270..1895544	+	424	150394274	-	SaurJH1_1818	-	2-alkenal reductase
1795	 33.41	0	1895638..1896900	-	420	150394275	-	SaurJH1_1819	-	tyrosyl-tRNA synthetase
1796	 30.13	0	1897282..1898187	+	301	150394276	-	SaurJH1_1820	-	glycosyl transferase family protein
1797	 33.74	0	1898390..1901065	-	891	150394277	-	SaurJH1_1821	-	cell wall anchor domain-containing protein
1798	 36.27	0	1901398..1903065	-	555	150394278	-	SaurJH1_1822	-	formate--tetrahydrofolate ligase
1799	 36.32	0	1903505..1905211	-	568	150394279	-	SaurJH1_1823	-	acetyl-CoA synthetase
1800	 34.28	0	1905380..1906012	+	210	150394280	-	SaurJH1_1824	-	acetoin dehydrogenase-like protein
1801	 34.70	0	1906037..1907206	+	389	150394281	-	SaurJH1_1825	-	histone deacetylase superfamily protein
1802	 33.03	0	1907304..1908293	-	329	150394282	-	SaurJH1_1826	-	catabolite control protein A
1803	 33.97	0	1908833..1909924	-	363	150394283	-	SaurJH1_1827	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
1804	 33.26	0	1910618..1911976	-	452	150394284	-	SaurJH1_1828	-	hypothetical protein
1805	 33.54	0	1912050..1912541	-	163	150394285	-	SaurJH1_1829	-	hypothetical protein
1806	 31.28	0	1912615..1913928	-	437	150394286	murC	SaurJH1_1830	-	UDP-N-acetylmuramate--L-alanine ligase
1807	 33.80	0	1913952..1917776	-	1274	150394287	-	SaurJH1_1831	-	cell division protein FtsK/SpoIIIE
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.