IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.01   STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.67	0	641..2002	+	453	150392481	dnaA	SaurJH1_0001	-	chromosomal replication initiation protein
2	 32.80	0	2280..3413	+	377	150392482	-	SaurJH1_0002	-	DNA polymerase III subunit beta
3	 35.86	0	3803..4039	+	78	150392483	-	SaurJH1_0003	-	S4 region YaaA family protein
4	 33.69	0	4036..5148	+	370	150392484	recF	SaurJH1_0004	-	recombination protein F
5	 36.87	+1	5170..7092	+	640	150392485	-	SaurJH1_0005	-	DNA gyrase, B subunit
6	 36.70	+1	7129..9798	+	889	150392486	-	SaurJH1_0006	-	DNA gyrase, A subunit
7	 36.53	+1	9886..10698	-	270	150392487	-	SaurJH1_0007	-	hypothetical protein
8	 37.03	+1	11024..12538	+	504	150392488	-	SaurJH1_0008	-	histidine ammonia-lyase
9	 34.42	0	12917..14203	+	428	150392489	-	SaurJH1_0009	-	seryl-tRNA synthetase
10	 37.07	+1	14854..15549	+	231	150392490	-	SaurJH1_0010	-	hypothetical protein
11	 33.94	0	15546..15875	+	109	150392491	-	SaurJH1_0011	-	hypothetical protein
12	 35.50	0	16238..17206	+	322	150392492	-	SaurJH1_0012	-	alpha/beta hydrolase fold
13	 33.33	0	17499..18437	+	312	150392493	-	SaurJH1_0013	-	hypothetical protein
14	 35.16	0	18452..20419	+	655	150392494	-	SaurJH1_0014	-	phosphoesterase domain-containing protein
15	 31.54	0	20416..20862	+	148	150392495	rplI	SaurJH1_0015	-	50S ribosomal protein L9
16	 38.26	+1	20894..22294	+	466	150392496	-	SaurJH1_0016	-	replicative DNA helicase
17	 36.60	+1	22572..23855	+	427	150392497	-	SaurJH1_0017	-	adenylosuccinate synthetase
18	 36.47	+1	25058..25759	+	233	150392498	-	SaurJH1_0018	-	response regulator receiver
19	 34.92	0	25772..27598	+	608	150392499	-	SaurJH1_0019	-	PAS sensor protein
20	 35.13	0	27591..28925	+	444	150392500	-	SaurJH1_0020	-	hypothetical protein
21	 32.70	0	28926..29714	+	262	150392501	-	SaurJH1_0021	-	hypothetical protein
22	 35.96	0	30103..30903	+	266	150392502	-	SaurJH1_0022	-	beta-lactamase domain-containing protein
23	 38.38	+1	31130..33448	+	772	150392503	-	SaurJH1_0023	-	cell wall anchor domain-containing protein
24	 39.38	+1	33816..34295	+	159	150392504	-	SaurJH1_0024	-	hypothetical protein
25	 28.48	-1	34617..35873	+	418	150392505	-	SaurJH1_0025	-	hypothetical protein
26	 34.37	0	36559..37233	-	224	150392506	-	SaurJH1_0026	-	integrase catalytic region
27	 33.47	0	37498..38241	+	247	150392507	-	SaurJH1_0027	-	glycerophosphodiester phosphodiesterase
28	 29.14	-1	38338..38766	+	142	150392508	-	SaurJH1_0028	-	dehydratase
29	 30.59	0	38812..40818	-	668	150392509	-	SaurJH1_0029	-	peptidoglycan glycosyltransferase
30	 28.61	-1	40918..42675	+	585	150392510	-	SaurJH1_0030	-	Beta-lactamase
31	 25.81	-2	42675..43046	+	123	150392511	-	SaurJH1_0031	-	penicillinase repressor
32	 29.28	-1	43554..44663	+	369	150392512	-	SaurJH1_0032	-	ROK family protein
33	 32.30	0	46144..47208	-	354	150392513	-	SaurJH1_0035	-	rhodanese domain-containing protein
34	 24.90	-2	47344..47604	+	86	150392514	-	SaurJH1_0036	-	hypothetical protein
35	 32.87	0	47604..48248	+	214	150392515	-	SaurJH1_0037	-	hypothetical protein
36	 34.39	0	48587..49249	-	220	150392516	-	SaurJH1_0038	-	methyltransferase type 12
37	 32.51	0	49745..50476	+	243	150392517	-	SaurJH1_0039	-	rRNA (adenine-N(6)-)-methyltransferase
38	 36.40	+1	50602..51384	-	260	150392518	-	SaurJH1_0040	-	3'-adenylyltransferase
39	 29.89	0	51535..51912	-	125	150392519	-	SaurJH1_0041	-	transposase C
40	 33.86	0	51919..53811	-	630	150392520	-	SaurJH1_0042	-	phage integrase family protein
41	 32.14	0	53808..54893	-	361	150392521	-	SaurJH1_0043	-	phage integrase family protein
42	 33.96	0	55012..55329	-	105	150392522	-	SaurJH1_0044	-	DNA repair protein RadC
43	 36.29	0	55350..55856	-	168	150392523	-	SaurJH1_0045	-	hypothetical protein
44	 32.05	0	55874..56185	-	103	150392524	-	SaurJH1_0046	-	hypothetical protein
45	 31.18	0	56187..56279	-	30	150392525	-	SaurJH1_0047	-	hypothetical protein
46	 34.76	0	56272..56622	-	116	150392526	-	SaurJH1_0048	-	hypothetical protein
47	 34.99	0	57140..58768	-	542	150392527	-	SaurJH1_0049	-	resolvase domain-containing protein
48	 34.81	0	58790..60139	-	449	150392528	-	SaurJH1_0050	-	resolvase domain-containing protein
49	 34.73	0	60373..62166	-	597	150392529	-	SaurJH1_0051	-	hypothetical protein
50	 34.68	0	62166..62462	-	98	150392530	-	SaurJH1_0052	-	hypothetical protein
51	 25.12	-2	62655..63701	-	348	150392531	-	SaurJH1_0053	-	hypothetical protein
52	 31.91	0	63952..64374	-	140	150392532	-	SaurJH1_0054	-	integrase catalytic region
53	 30.23	0	64441..64794	-	117	150392533	-	SaurJH1_0055	-	transposase
54	 30.79	0	64779..65093	-	104	150392534	-	SaurJH1_0056	-	putative transposase
55	 25.93	-2	65263..65397	+	44	150392535	-	SaurJH1_0057	-	hypothetical protein
56	 37.36	+1	67252..67947	-	231	150392536	-	SaurJH1_0059	-	response regulator receiver
57	 36.63	+1	67922..70591	-	889	150392537	-	SaurJH1_0060	-	osmosensitive K channel His kinase sensor
58	 36.79	+1	70859..72535	+	558	150392538	-	SaurJH1_0061	-	potassium-transporting ATPase subunit A
59	 39.76	+1	72554..74575	+	673	150392539	-	SaurJH1_0062	-	K+-transporting ATPase, B subunit
60	 36.74	+1	74591..75148	+	185	150392540	-	SaurJH1_0063	-	potassium-transporting ATPase, C subunit
61	 33.56	0	75693..76562	-	289	150392541	-	SaurJH1_0064	-	hypothetical protein
62	 36.68	+1	76572..77468	-	298	150392542	-	SaurJH1_0065	-	hypothetical protein
63	 26.94	-1	77668..78105	-	145	150392543	-	SaurJH1_0066	-	hypothetical protein
64	 30.56	0	78210..78497	-	95	150392544	-	SaurJH1_0067	-	hypothetical protein
65	 29.67	0	78587..79213	-	208	150392545	-	SaurJH1_0068	-	hypothetical protein
66	 31.21	0	79328..80836	+	502	150392546	-	SaurJH1_0069	-	protein kinase
67	 21.51	-2	81184..81276	+	30	150392547	-	SaurJH1_0070	-	hypothetical protein
68	 25.60	-2	81423..83168	+	581	150392548	-	SaurJH1_0071	-	hypothetical protein
69	 31.48	0	84112..84867	-	251	150392549	-	SaurJH1_0073	-	hypothetical protein
70	 30.65	0	84867..85127	-	86	150392550	-	SaurJH1_0074	-	hypothetical protein
71	 31.64	0	85264..86328	+	354	150392551	-	SaurJH1_0075	-	rhodanese domain-containing protein
72	 33.48	0	86359..87693	+	444	150392552	-	SaurJH1_0076	-	beta-lactamase domain-containing protein
73	 32.66	0	87712..88905	+	397	150392553	-	SaurJH1_0077	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
74	 31.37	0	89172..89273	-	33	150392554	-	SaurJH1_0078	-	hypothetical protein
75	 38.91	+1	89572..90558	-	328	150392555	-	SaurJH1_0079	-	hypothetical protein
76	 26.96	-1	90867..91070	+	67	150392556	-	SaurJH1_0080	-	hypothetical protein
77	 30.30	0	91119..91415	+	98	150392557	-	SaurJH1_0081	-	TfoX domain-containing protein
78	 30.85	0	91623..92225	+	200	150392558	-	SaurJH1_0082	-	hypothetical protein
79	 31.88	0	95696..96178	+	160	150392559	-	SaurJH1_0085	-	hypothetical protein
80	 33.74	0	96384..97370	+	328	150392560	-	SaurJH1_0086	-	phosphatidylinositol diacylglycerol-lyase
81	 30.09	0	97591..98361	+	256	150392561	-	SaurJH1_0087	-	putative lipoprotein
82	 29.73	0	98380..99183	+	267	150392562	-	SaurJH1_0088	-	putative lipoprotein
83	 29.95	0	99251..100018	+	255	150392563	-	SaurJH1_0089	-	putative lipoprotein
84	 28.91	-1	100086..100853	+	255	150392564	-	SaurJH1_0090	-	putative lipoprotein
85	 30.86	0	100920..101687	+	255	150392565	-	SaurJH1_0091	-	putative lipoprotein
86	 33.69	0	101784..104021	+	745	150392566	-	SaurJH1_0092	-	helix-turn-helix domain-containing protein
87	 37.23	+1	104172..105350	+	392	150392567	-	SaurJH1_0093	-	amidohydrolase
88	 36.79	+1	105352..106740	+	462	150392568	-	SaurJH1_0094	-	major facilitator transporter
89	 32.52	0	106902..107024	+	40	150392569	-	SaurJH1_0095	-	hypothetical protein
90	 36.09	0	107224..108891	-	555	150392570	-	SaurJH1_0096	-	Na/Pi-cotransporter II-related protein
91	 35.81	0	109210..110985	-	591	150392571	-	SaurJH1_0097	-	67 kDa myosin-cross-reactive antigen family protein
92	 30.81	0	111159..112031	-	290	150392572	-	SaurJH1_0098	-	hypothetical protein
93	 29.42	-1	112213..113541	+	442	150392573	-	SaurJH1_0099	-	aminotransferase class I and II
94	 29.54	-1	113731..114204	+	157	150392574	-	SaurJH1_0100	-	hypothetical protein
95	 34.59	0	114466..116058	+	530	150392575	-	SaurJH1_0101	-	L-lactate transport
96	 38.20	+1	116387..117949	-	520	150392576	-	SaurJH1_0102	-	cell wall anchor domain-containing protein
97	 27.49	-1	118334..119086	-	250	150392577	-	SaurJH1_0103	-	accessory regulator A-like protein
98	 36.74	+1	119455..120453	-	332	150392578	-	SaurJH1_0104	-	transport system permease protein
99	 38.45	+1	120450..121445	-	331	150392579	-	SaurJH1_0105	-	transport system permease protein
100	 32.23	0	121461..122453	-	330	150392580	-	SaurJH1_0106	-	periplasmic binding protein
33.01	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.