IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1507	 34.16	0	1596401..1597723	-	440	150393987	-	SaurJH1_1526	-	amino acid permease-associated region
1508	 35.06	0	1597754..1598794	-	346	150393988	-	SaurJH1_1527	-	threonine dehydratase
1509	 35.48	0	1598889..1600007	-	372	150393989	-	SaurJH1_1528	-	alanine dehydrogenase
1510	 32.31	0	1600483..1601361	-	292	150393990	-	SaurJH1_1529	-	5'-3' exonuclease
1511	 30.34	0	1601381..1604821	-	1146	150393991	-	SaurJH1_1530	-	hypothetical protein
1512	 32.59	0	1605125..1606465	+	446	150393992	-	SaurJH1_1531	-	peptidase
1513	 29.43	-1	1606671..1607003	-	110	150393993	-	SaurJH1_1532	-	hypothetical protein
1514	 35.69	0	1607087..1608232	-	381	150393994	-	SaurJH1_1533	-	hypothetical protein
1515	 27.25	-1	1608883..1609227	-	114	150393995	-	SaurJH1_1534	-	hypothetical protein
1516	 31.74	0	1609241..1609804	-	187	150393996	-	SaurJH1_1535	-	hypothetical protein
1517	 29.34	-1	1609797..1610147	-	116	150393997	-	SaurJH1_1536	-	hypothetical protein
1518	 32.06	0	1610687..1611313	+	208	150393998	recU	SaurJH1_1537	-	Holliday junction-specific endonuclease
1519	 35.49	0	1611310..1613493	+	727	150393999	-	SaurJH1_1538	-	glycosyl transferase family protein
1520	 27.49	-1	1614059..1614400	-	113	150394000	-	SaurJH1_1539	-	hypothetical protein
1521	 34.39	0	1614405..1615064	-	219	150394001	-	SaurJH1_1540	-	endonuclease III
1522	 30.57	0	1615054..1615740	-	228	150394002	-	SaurJH1_1541	-	primosome, DnaD subunit
1523	 35.58	0	1616068..1617360	-	430	150394003	asnC	SaurJH1_1542	-	asparaginyl-tRNA synthetase
1524	 29.96	0	1617682..1620375	-	897	150394004	-	SaurJH1_1543	-	DnaQ family exonuclease/DinG family helicase
1525	 30.45	0	1620399..1621370	-	323	150394005	-	SaurJH1_1544	-	biotin--acetyl-CoA-carboxylase ligase
1526	 31.84	0	1621357..1622559	-	400	162077203	-	SaurJH1_1545	-	tRNA CCA-pyrophosphorylase
1527	 32.90	0	1622564..1623706	-	380	150394007	-	SaurJH1_1546	-	glycosyl transferase group 1
1528	 31.45	0	1623950..1624267	-	105	150394008	-	SaurJH1_1547	-	hypothetical protein
1529	 36.62	+1	1624603..1625301	-	232	150394009	-	SaurJH1_1548	-	hypothetical protein
1530	 28.91	-1	1625355..1625942	-	195	150394010	-	SaurJH1_1549	-	hypothetical protein
1531	 30.38	0	1625932..1626507	-	191	150394011	-	SaurJH1_1550	-	hypothetical protein
1532	 30.92	0	1626521..1627765	-	414	150394012	-	SaurJH1_1551	-	TPR repeat-containing protein
1533	 34.33	0	1627772..1629070	-	432	150394013	-	SaurJH1_1552	-	3-phosphoshikimate 1-carboxyvinyltransferase
1534	 32.58	0	1629080..1630144	-	354	150394014	-	SaurJH1_1553	-	3-dehydroquinate synthase
1535	 35.30	0	1630170..1631336	-	388	150394015	-	SaurJH1_1554	-	chorismate synthase
1536	 20.90	-2	1631722..1631922	-	66	150394016	-	SaurJH1_1555	-	hypothetical protein
1537	 34.67	0	1632131..1632580	-	149	150394017	-	SaurJH1_1556	-	nucleoside-diphosphate kinase
1538	 34.69	0	1632672..1633631	-	319	150394018	-	SaurJH1_1557	-	polyprenyl synthetase
1539	 34.16	0	1633633..1634358	-	241	150394019	ubiE	SaurJH1_1558	-	ubiquinone/menaquinone biosynthesis methyltransferase
1540	 27.57	-1	1634361..1634933	-	190	150394020	-	SaurJH1_1559	-	hypothetical protein
1541	 36.63	+1	1635364..1635636	-	90	150394021	-	SaurJH1_1560	-	histone family protein DNA-binding protein
1542	 34.33	0	1635807..1636805	-	332	150394022	-	SaurJH1_1561	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
1543	 35.24	0	1636822..1638132	-	436	150394023	engA	SaurJH1_1562	-	GTP-binding protein EngA
1544	 33.76	0	1638354..1639529	-	391	150394024	rpsA	SaurJH1_1563	-	30S ribosomal protein S1
1545	 26.56	-1	1639786..1639977	-	63	150394025	-	SaurJH1_1564	-	hypothetical protein
1546	 34.70	0	1640241..1640900	-	219	150394026	-	SaurJH1_1565	-	cytidylate kinase
1547	 34.78	0	1640977..1641945	+	322	150394027	-	SaurJH1_1566	-	asparaginase/glutaminase
1548	 33.23	0	1642060..1643046	-	328	150394028	-	SaurJH1_1567	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1549	 36.69	+1	1643448..1644908	-	486	150394029	-	SaurJH1_1568	-	peptidoglycan-binding LysM
1550	 33.77	0	1645061..1646440	-	459	150394030	-	SaurJH1_1569	-	ATP-dependent DNA helicase RecQ
1551	 28.09	-1	1646430..1647383	-	317	150394031	-	SaurJH1_1570	-	hypothetical protein
1552	 38.55	+1	1647491..1647739	+	82	150394032	-	SaurJH1_1571	-	ferredoxin
1553	 32.60	0	1647845..1648390	-	181	150394033	-	SaurJH1_1572	-	hypothetical protein
1554	 30.83	0	1648792..1649748	-	318	150394034	-	SaurJH1_1573	-	hypothetical protein
1555	 27.45	-1	1649889..1650143	-	84	150394035	-	SaurJH1_1574	-	hypothetical protein
1556	 30.10	0	1650219..1651115	-	298	150394036	-	SaurJH1_1575	-	hypothetical protein
1557	 31.35	0	1651173..1652078	-	301	150394037	-	SaurJH1_1576	-	hypothetical protein
1558	 29.68	0	1652168..1654330	-	720	150394038	-	SaurJH1_1577	-	hypothetical protein
1559	 31.18	0	1654323..1655249	-	308	150394039	-	SaurJH1_1578	-	hypothetical protein
1560	 32.99	0	1655493..1657244	-	583	150394040	-	SaurJH1_1579	-	histidine kinase
1561	 34.57	0	1657225..1657950	-	241	150394041	-	SaurJH1_1580	-	response regulator receiver
1562	 33.88	0	1658083..1658820	-	245	150394042	-	SaurJH1_1581	-	ribosomal large subunit pseudouridine synthase B
1563	 31.49	0	1658813..1659355	-	180	150394043	-	SaurJH1_1582	-	segregation and condensation protein B
1564	 30.19	0	1659348..1660079	-	243	150394044	-	SaurJH1_1583	-	hypothetical protein
1565	 32.74	0	1660171..1660677	+	168	150394045	-	SaurJH1_1584	-	hypothetical protein
1566	 33.33	0	1660755..1661642	-	295	150394046	-	SaurJH1_1585	-	tyrosine recombinase XerD
1567	 36.00	0	1661691..1662140	-	149	150394047	-	SaurJH1_1586	-	ferric-uptake regulator
1568	 31.49	0	1662245..1662787	-	180	150394048	-	SaurJH1_1587	-	NUDIX hydrolase
1569	 32.12	0	1662869..1663777	+	302	150394049	-	SaurJH1_1588	-	aldo/keto reductase
1570	 32.93	0	1663993..1664241	-	82	150394050	-	SaurJH1_1589	-	hypothetical protein
1571	 33.73	0	1664257..1665012	-	251	150394051	-	SaurJH1_1590	-	short-chain dehydrogenase/reductase SDR
1572	 33.95	0	1665154..1665969	+	271	150394052	-	SaurJH1_1591	-	pyrroline-5-carboxylate reductase
1573	 33.44	0	1666072..1666992	-	306	150394053	-	SaurJH1_1592	-	ribonuclease Z
1574	 33.47	0	1667305..1668789	+	494	150394054	-	SaurJH1_1593	-	glucose-6-phosphate 1-dehydrogenase
1575	 33.56	0	1668992..1669885	+	297	150394055	-	SaurJH1_1594	-	transcription activator effector binding
1576	 34.36	0	1669967..1671616	-	549	150394056	-	SaurJH1_1595	-	alpha-D-1,4-glucosidase
1577	 31.47	0	1671632..1672651	-	339	150394057	-	SaurJH1_1596	-	maltose operon transcriptional repressor
1578	 28.07	-1	1672652..1672879	-	75	150394058	-	SaurJH1_1597	-	hypothetical protein
1579	 32.80	0	1672845..1673216	-	123	150394059	-	SaurJH1_1598	-	glyoxalase/bleomycin resistance protein/dioxygenase
1580	 28.41	-1	1673683..1674900	-	405	150394060	-	SaurJH1_1600	-	major facilitator transporter
1581	 33.83	0	1675216..1676622	-	468	150394061	-	SaurJH1_1601	-	6-phosphogluconate dehydrogenase
1582	 36.24	0	1676690..1677823	-	377	150394062	-	SaurJH1_1602	-	peptidase T-like protein
1583	 23.66	-2	1678173..1678265	+	30	150394063	-	SaurJH1_1603	-	hypothetical protein
1584	 29.87	0	1678392..1679372	-	326	150394064	-	SaurJH1_1604	-	hypothetical protein
1585	 36.30	0	1679386..1679823	-	145	150394065	-	SaurJH1_1605	-	hypothetical protein
1586	 27.27	-1	1679896..1679994	-	32	150394066	-	SaurJH1_1606	-	hypothetical protein
1587	 32.94	0	1680174..1681448	-	424	150394067	-	SaurJH1_1607	-	dehydrogenase catalytic domain-containing protein
1588	 35.06	0	1681461..1682444	-	327	150394068	-	SaurJH1_1608	-	transketolase central region
1589	 38.37	+1	1682444..1683436	-	330	150394069	-	SaurJH1_1609	-	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)
1590	 34.81	0	1683452..1684873	-	473	150394070	-	SaurJH1_1610	-	dihydrolipoamide dehydrogenase
1591	 30.77	0	1685024..1686703	-	559	150394071	-	SaurJH1_1611	-	DNA repair protein RecN
1592	 29.80	0	1686719..1687171	-	150	150394072	-	SaurJH1_1612	-	arginine repressor
1593	 34.58	0	1687603..1688484	-	293	150394073	-	SaurJH1_1613	-	polyprenyl synthetase
1594	 30.30	0	1688462..1688692	-	76	150394074	-	SaurJH1_1614	-	exodeoxyribonuclease VII, small subunit
1595	 31.17	0	1688685..1690022	-	445	150394075	xseA	SaurJH1_1615	-	exodeoxyribonuclease VII large subunit
1596	 29.49	-1	1690039..1690428	-	129	150394076	nusB	SaurJH1_1616	-	transcription antitermination protein NusB
1597	 29.20	-1	1690488..1690850	-	120	150394077	-	SaurJH1_1617	-	hypothetical protein
1598	 36.28	0	1690865..1692220	-	451	150394078	-	SaurJH1_1618	-	acetyl-CoA carboxylase biotin carboxylase subunit
1599	 35.05	0	1692220..1692684	-	154	150394079	-	SaurJH1_1619	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
1600	 33.15	0	1693158..1693715	-	185	150394080	-	SaurJH1_1620	-	elongation factor P
1601	 31.92	0	1693741..1694802	-	353	150394081	-	SaurJH1_1621	-	peptidase M24
1602	 27.49	-1	1694907..1695488	+	193	150394082	-	SaurJH1_1622	-	hypothetical protein
1603	 28.77	-1	1695502..1695720	+	72	150394083	-	SaurJH1_1623	-	hypothetical protein
1604	 34.78	0	1695784..1696614	-	276	150394084	-	SaurJH1_1624	-	biotin/lipoate A/B protein ligase
1605	 33.59	0	1696772..1697158	+	128	150394085	-	SaurJH1_1625	-	rhodanese domain-containing protein
1606	 34.56	0	1697523..1698995	-	490	150394086	-	SaurJH1_1626	-	glycine dehydrogenase subunit 2
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.