IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1437	 32.88	0	1494240..1495331	-	363	150393917	-	SaurJH1_1455	-	prephenate dehydrogenase
1438	 33.43	0	1495496..1496527	+	343	150393918	-	SaurJH1_1456	-	peptidase M42 family protein
1439	 31.49	0	1497019..1498425	+	468	150393919	-	SaurJH1_1457	-	anthranilate synthase component I
1440	 35.45	0	1498422..1498988	+	188	150393920	-	SaurJH1_1458	-	anthranilate synthase component II
1441	 33.83	0	1498994..1499992	+	332	150393921	-	SaurJH1_1459	-	anthranilate phosphoribosyltransferase
1442	 32.18	0	1499994..1500776	+	260	150393922	-	SaurJH1_1460	-	indole-3-glycerol-phosphate synthase
1443	 31.76	0	1500773..1501408	+	211	150393923	-	SaurJH1_1461	-	phosphoribosylanthranilate isomerase
1444	 37.94	+1	1501401..1502615	+	404	150393924	-	SaurJH1_1462	-	tryptophan synthase subunit beta
1445	 34.16	0	1502608..1503336	+	242	150393925	trpA	SaurJH1_1463	-	tryptophan synthase subunit alpha
1446	 31.99	0	1503658..1504920	+	420	150393926	-	SaurJH1_1464	-	methicillin resistance protein
1447	 31.59	0	1504939..1506198	+	419	150393927	-	SaurJH1_1465	-	methicillin resistance protein
1448	 23.96	-2	1506487..1507233	+	248	150393928	-	SaurJH1_1466	-	hypothetical protein
1449	 31.51	0	1507463..1508230	+	255	150393929	-	SaurJH1_1467	-	Cof-like hydrolase
1450	 32.91	0	1508278..1508751	-	157	150393930	-	SaurJH1_1468	-	zinc finger SWIM domain-containing protein
1451	 32.48	0	1508875..1509576	-	233	150393931	-	SaurJH1_1469	-	ABC transporter related
1452	 31.14	0	1509569..1510342	-	257	150393932	-	SaurJH1_1470	-	ABC transporter related
1453	 32.25	0	1510329..1511159	-	276	150393933	-	SaurJH1_1471	-	binding-protein-dependent transport systems inner membrane component
1454	 31.31	0	1511152..1512138	-	328	150393934	-	SaurJH1_1472	-	binding-protein-dependent transport systems inner membrane component
1455	 27.25	-1	1512442..1512786	-	114	150393935	-	SaurJH1_1473	-	hypothetical protein
1456	 33.44	0	1512991..1514805	+	604	150393936	-	SaurJH1_1474	-	oligoendopeptidase F
1457	 31.93	0	1514945..1515586	-	213	150393937	-	SaurJH1_1475	-	phosphate transport system regulatory protein PhoU
1458	 32.28	0	1515593..1516444	-	283	150393938	-	SaurJH1_1476	-	phosphate ABC transporter, ATPase subunit
1459	 35.40	0	1516491..1517408	-	305	150393939	-	SaurJH1_1477	-	phosphate ABC transporter, inner membrane subunit PstA
1460	 35.71	0	1517410..1518336	-	308	150393940	-	SaurJH1_1478	-	phosphate ABC transporter, inner membrane subunit PstC
1461	 32.01	0	1518527..1519510	-	327	150393941	-	SaurJH1_1479	-	phosphate binding protein
1462	 34.99	0	1520485..1521387	-	300	150393942	-	SaurJH1_1481	-	hypothetical protein
1463	 33.21	0	1521534..1523135	+	533	150393943	-	SaurJH1_1482	-	ABC transporter related
1464	 34.66	0	1524197..1525402	+	401	150393944	-	SaurJH1_1483	-	aspartate kinase
1465	 35.96	0	1525466..1526455	+	329	150393945	-	SaurJH1_1484	-	aspartate semialdehyde dehydrogenase
1466	 35.70	0	1526457..1527344	+	295	150393946	-	SaurJH1_1485	-	dihydrodipicolinate synthase
1467	 35.96	0	1527341..1528063	+	240	150393947	-	SaurJH1_1486	-	dihydrodipicolinate reductase
1468	 38.19	+1	1528090..1528809	+	239	150393948	-	SaurJH1_1487	-	tetrahydrodipicolinate succinyltransferase domain-containing protein
1469	 34.81	0	1528952..1530103	+	383	150393949	-	SaurJH1_1488	-	amidohydrolase
1470	 33.79	0	1530108..1531193	+	361	150393950	-	SaurJH1_1489	-	alanine racemase
1471	 33.57	0	1531183..1532448	+	421	150393951	-	SaurJH1_1490	-	diaminopimelate decarboxylase
1472	 22.14	-2	1532688..1533089	-	133	150393952	-	SaurJH1_1491	-	hypothetical protein
1473	 37.81	+1	1533286..1533486	-	66	150393953	-	SaurJH1_1492	-	cold-shock protein DNA-binding
1474	 27.51	-1	1533657..1533965	-	102	150393954	-	SaurJH1_1493	-	hypothetical protein
1475	 35.56	0	1534128..1534397	+	89	150393955	-	SaurJH1_1494	-	acylphosphatase
1476	 30.00	0	1534416..1535045	+	209	150393956	-	SaurJH1_1495	-	hypothetical protein
1477	 32.63	0	1535077..1536213	+	378	150393957	-	SaurJH1_1496	-	toxic anion resistance family protein
1478	 32.22	0	1536286..1537629	-	447	150393958	-	SaurJH1_1497	-	branched-chain amino acid transport system II carrier protein
1479	 31.69	0	1537854..1539740	-	628	150393959	-	SaurJH1_1498	-	hypothetical protein
1480	 31.82	0	1539754..1540545	-	263	150393960	-	SaurJH1_1499	-	ATPase
1481	 29.41	-1	1540726..1540929	-	67	150393961	-	SaurJH1_1500	-	hypothetical protein
1482	 34.94	0	1540958..1541767	-	269	150393962	-	SaurJH1_1501	-	hypothetical protein
1483	 34.20	0	1542347..1543615	-	422	150393963	-	SaurJH1_1502	-	dihydrolipoamide acetyltransferase
1484	 35.91	0	1543629..1546427	-	932	150393964	kgd	SaurJH1_1503	-	alpha-ketoglutarate decarboxylase
1485	 29.20	-1	1546711..1548066	-	451	150393965	-	SaurJH1_1504	-	ATPase domain-containing protein
1486	 33.18	0	1548063..1548722	-	219	150393966	-	SaurJH1_1505	-	response regulator receiver
1487	 32.36	0	1549512..1550126	-	204	150393967	-	SaurJH1_1506	-	hypothetical protein
1488	 29.79	0	1550143..1551213	-	356	150393968	murG	SaurJH1_1507	-	N-acetylglucosaminyl transferase
1489	 33.73	0	1551225..1551734	-	169	150393969	-	SaurJH1_1508	-	GCN5-related N-acetyltransferase
1490	 31.32	0	1552134..1553624	-	496	150393970	-	SaurJH1_1509	-	carboxyl-terminal protease
1491	 33.78	0	1553816..1554037	-	73	150393971	-	SaurJH1_1510	-	hypothetical protein
1492	 33.93	0	1554037..1554537	-	166	150393972	-	SaurJH1_1511	-	PTS system, glucose subfamily, IIA subunit
1493	 32.17	0	1554549..1554977	-	142	150393973	-	SaurJH1_1512	-	methionine sulfoxide reductase B
1494	 35.58	0	1554970..1555503	-	177	150393974	-	SaurJH1_1513	-	methionine sulfoxide reductase A
1495	 31.67	0	1555589..1556428	-	279	150393975	-	SaurJH1_1514	-	hypothetical protein
1496	 34.38	0	1556443..1556922	-	159	150393976	-	SaurJH1_1515	-	dihydrofolate reductase
1497	 33.65	0	1557122..1558078	-	318	150393977	thyA	SaurJH1_1516	-	thymidylate synthase
1498	 36.99	+1	1558502..1558939	-	145	150393978	-	SaurJH1_1517	-	hypothetical protein
1499	 34.84	0	1558955..1560079	-	374	150393979	-	SaurJH1_1518	-	HEAT repeat-containing PBS lyase
1500	 32.94	0	1560117..1560368	-	83	150393980	-	SaurJH1_1519	-	hypothetical protein
1501	 33.85	0	1560380..1560574	-	64	150393981	-	SaurJH1_1520	-	hypothetical protein
1502	 30.35	0	1560819..1561523	+	234	150393982	-	SaurJH1_1521	-	hypothetical protein
1503	 45.45	+2	1561588..1561719	-	43	150393983	-	SaurJH1_1522	-	hypothetical protein
1504	 32.34	0	1562122..1562523	+	133	150393984	-	SaurJH1_1523	-	cell wall enzyme EbsB-like protein
1505	 35.93	0	1562582..1594456	-	10624	150393985	-	SaurJH1_1524	-	hypothetical protein
1506	 32.97	0	1594854..1596245	-	463	150393986	-	SaurJH1_1525	-	major facilitator transporter
1507	 34.16	0	1596401..1597723	-	440	150393987	-	SaurJH1_1526	-	amino acid permease-associated region
1508	 35.06	0	1597754..1598794	-	346	150393988	-	SaurJH1_1527	-	threonine dehydratase
1509	 35.48	0	1598889..1600007	-	372	150393989	-	SaurJH1_1528	-	alanine dehydrogenase
1510	 32.31	0	1600483..1601361	-	292	150393990	-	SaurJH1_1529	-	5'-3' exonuclease
1511	 30.34	0	1601381..1604821	-	1146	150393991	-	SaurJH1_1530	-	hypothetical protein
1512	 32.59	0	1605125..1606465	+	446	150393992	-	SaurJH1_1531	-	peptidase
1513	 29.43	-1	1606671..1607003	-	110	150393993	-	SaurJH1_1532	-	hypothetical protein
1514	 35.69	0	1607087..1608232	-	381	150393994	-	SaurJH1_1533	-	hypothetical protein
1515	 27.25	-1	1608883..1609227	-	114	150393995	-	SaurJH1_1534	-	hypothetical protein
1516	 31.74	0	1609241..1609804	-	187	150393996	-	SaurJH1_1535	-	hypothetical protein
1517	 29.34	-1	1609797..1610147	-	116	150393997	-	SaurJH1_1536	-	hypothetical protein
1518	 32.06	0	1610687..1611313	+	208	150393998	recU	SaurJH1_1537	-	Holliday junction-specific endonuclease
1519	 35.49	0	1611310..1613493	+	727	150393999	-	SaurJH1_1538	-	glycosyl transferase family protein
1520	 27.49	-1	1614059..1614400	-	113	150394000	-	SaurJH1_1539	-	hypothetical protein
1521	 34.39	0	1614405..1615064	-	219	150394001	-	SaurJH1_1540	-	endonuclease III
1522	 30.57	0	1615054..1615740	-	228	150394002	-	SaurJH1_1541	-	primosome, DnaD subunit
1523	 35.58	0	1616068..1617360	-	430	150394003	asnC	SaurJH1_1542	-	asparaginyl-tRNA synthetase
1524	 29.96	0	1617682..1620375	-	897	150394004	-	SaurJH1_1543	-	DnaQ family exonuclease/DinG family helicase
1525	 30.45	0	1620399..1621370	-	323	150394005	-	SaurJH1_1544	-	biotin--acetyl-CoA-carboxylase ligase
1526	 31.84	0	1621357..1622559	-	400	162077203	-	SaurJH1_1545	-	tRNA CCA-pyrophosphorylase
1527	 32.90	0	1622564..1623706	-	380	150394007	-	SaurJH1_1546	-	glycosyl transferase group 1
1528	 31.45	0	1623950..1624267	-	105	150394008	-	SaurJH1_1547	-	hypothetical protein
1529	 36.62	+1	1624603..1625301	-	232	150394009	-	SaurJH1_1548	-	hypothetical protein
1530	 28.91	-1	1625355..1625942	-	195	150394010	-	SaurJH1_1549	-	hypothetical protein
1531	 30.38	0	1625932..1626507	-	191	150394011	-	SaurJH1_1550	-	hypothetical protein
1532	 30.92	0	1626521..1627765	-	414	150394012	-	SaurJH1_1551	-	TPR repeat-containing protein
1533	 34.33	0	1627772..1629070	-	432	150394013	-	SaurJH1_1552	-	3-phosphoshikimate 1-carboxyvinyltransferase
1534	 32.58	0	1629080..1630144	-	354	150394014	-	SaurJH1_1553	-	3-dehydroquinate synthase
1535	 35.30	0	1630170..1631336	-	388	150394015	-	SaurJH1_1554	-	chorismate synthase
1536	 20.90	-2	1631722..1631922	-	66	150394016	-	SaurJH1_1555	-	hypothetical protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.