IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1362	 29.78	0	1414296..1414661	+	121	150393842	-	SaurJH1_1379	-	hypothetical protein
1363	 34.15	0	1414688..1415179	+	163	150393843	-	SaurJH1_1380	-	hypothetical protein
1364	 32.19	0	1415482..1418100	+	872	150393844	-	SaurJH1_1381	-	DNA mismatch repair protein
1365	 31.24	0	1418113..1420122	+	669	150393845	-	SaurJH1_1382	-	DNA mismatch repair protein MutL
1366	 29.10	-1	1420128..1420670	+	180	150393846	-	SaurJH1_1383	-	glycerol uptake operon antiterminator regulatory protein
1367	 37.73	+1	1421145..1421963	+	272	150393847	-	SaurJH1_1384	-	MIP family channel protein
1368	 36.34	0	1422092..1423588	+	498	150393848	glpK	SaurJH1_1385	-	glycerol kinase
1369	 34.11	0	1423746..1425419	+	557	150393849	-	SaurJH1_1386	-	aerobic glycerol-3-phosphate dehydrogenase
1370	 30.17	0	1425566..1426483	+	305	150393850	-	SaurJH1_1387	-	alpha/beta hydrolase fold
1371	 31.84	0	1426501..1427436	+	311	150393851	-	SaurJH1_1388	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1372	 34.19	0	1427451..1427684	+	77	150393852	-	SaurJH1_1389	-	RNA chaperone Hfq
1373	 33.33	0	1427906..1428382	-	158	150393853	-	SaurJH1_1390	-	glutathione peroxidase
1374	 31.48	0	1428494..1429732	+	412	150393854	-	SaurJH1_1391	-	GTP-binding protein HSR1-related
1375	 35.11	0	1429751..1430989	+	412	150393855	-	SaurJH1_1392	-	hypothetical protein
1376	 32.52	0	1431232..1431600	+	122	150393856	-	SaurJH1_1393	-	glutamine synthetase repressor
1377	 35.05	0	1431619..1432959	+	446	150393857	-	SaurJH1_1394	-	glutamine synthetase, type I
1378	 26.77	-1	1433452..1433649	+	65	150393858	-	SaurJH1_1395	-	hypothetical protein
1379	 23.47	-2	1434348..1434560	+	70	150393859	-	SaurJH1_1396	-	hypothetical protein
1380	 23.67	-2	1434854..1435060	+	68	150393860	-	SaurJH1_1397	-	hypothetical protein
1381	 20.72	-2	1435760..1435870	+	36	150393861	-	SaurJH1_1398	-	hypothetical protein
1382	 26.88	-1	1436294..1436479	+	61	150393862	-	SaurJH1_1399	-	hypothetical protein
1383	 25.71	-2	1436990..1437094	+	34	150393863	-	SaurJH1_1400	-	hypothetical protein
1384	 25.40	-2	1437222..1437473	+	83	150393864	-	SaurJH1_1401	-	hypothetical protein
1385	 21.54	-2	1438196..1438390	+	64	150393865	-	SaurJH1_1403	-	hypothetical protein
1386	 33.62	0	1438934..1439989	-	351	150393866	-	SaurJH1_1404	-	hypothetical protein
1387	 22.22	-2	1440229..1440426	+	65	150393867	-	SaurJH1_1405	-	hypothetical protein
1388	 31.55	0	1440447..1441964	+	505	150393868	-	SaurJH1_1406	-	phospholipase D/transphosphatidylase
1389	 27.00	-1	1442148..1443047	+	299	150393869	-	SaurJH1_1407	-	ABC transporter related
1390	 27.87	-1	1443016..1443747	+	243	150393870	-	SaurJH1_1408	-	ABC-2 type transporter
1391	 26.65	-1	1443751..1444842	+	363	150393871	-	SaurJH1_1409	-	histidine kinase dimerisation and phosphoacceptor region
1392	 29.85	0	1444839..1445441	+	200	150393872	-	SaurJH1_1410	-	response regulator receiver
1393	 26.98	-1	1445554..1445742	-	62	150393873	-	SaurJH1_1411	-	hypothetical protein
1394	 31.94	0	1445842..1446414	+	190	150393874	-	SaurJH1_1412	-	thermonuclease
1395	 29.24	-1	1446559..1447413	-	284	150393875	-	SaurJH1_1413	-	hypothetical protein
1396	 29.74	0	1447735..1448319	+	194	150393876	-	SaurJH1_1414	-	hypothetical protein
1397	 31.45	0	1448373..1449755	-	460	150393877	-	SaurJH1_1415	-	aspartate kinase
1398	 32.47	0	1449946..1451226	+	426	150393878	-	SaurJH1_1416	-	homoserine dehydrogenase
1399	 34.93	0	1451232..1452293	+	353	150393879	-	SaurJH1_1417	-	threonine synthase
1400	 35.96	0	1452295..1453209	+	304	150393880	-	SaurJH1_1418	-	homoserine kinase
1401	 33.58	0	1453267..1454070	+	267	150393881	-	SaurJH1_1419	-	Cof-like hydrolase
1402	 30.48	0	1454363..1454677	-	104	150393882	-	SaurJH1_1420	-	hypothetical protein
1403	 33.20	0	1454895..1456349	-	484	150393883	-	SaurJH1_1421	-	amino acid permease-associated region
1404	 36.10	0	1456553..1458070	+	505	150393884	-	SaurJH1_1422	-	catalase
1405	 33.33	0	1458161..1458310	+	49	150393885	rpmG	SaurJH1_1423	-	50S ribosomal protein L33
1406	 32.59	0	1458764..1459033	+	89	150393886	rpsN	SaurJH1_1424	-	30S ribosomal protein S14
1407	 33.54	0	1459190..1460167	+	325	150393887	-	SaurJH1_1425	-	guanosine 5'-monophosphate oxidoreductase
1408	 28.70	-1	1460342..1461205	+	287	150393888	-	SaurJH1_1426	-	SCP-like extracellular protein
1409	 35.90	0	1461585..1462208	-	207	150393889	-	SaurJH1_1427	-	LexA repressor
1410	 31.41	0	1462273..1462584	+	103	150393890	-	SaurJH1_1428	-	hypothetical protein
1411	 27.50	-1	1462721..1462960	+	79	150393891	-	SaurJH1_1429	-	hypothetical protein
1412	 36.00	0	1463081..1465069	+	662	150393892	-	SaurJH1_1430	-	transketolase
1413	 31.28	0	1465347..1465589	+	80	150393893	-	SaurJH1_1431	-	hypothetical protein
1414	 26.26	-1	1465576..1465674	+	32	150393894	-	SaurJH1_1432	-	hypothetical protein
1415	 31.20	0	1465768..1466235	+	155	150393895	-	SaurJH1_1433	-	hypothetical protein
1416	 30.57	0	1466359..1467480	+	373	150393896	-	SaurJH1_1434	-	nuclease SbcCD, D subunit
1417	 28.51	-1	1467484..1470513	+	1009	150393897	-	SaurJH1_1435	-	putative exonuclease SbcC
1418	 31.40	0	1470584..1470946	-	120	150393898	-	SaurJH1_1436	-	large conductance mechanosensitive channel protein
1419	 35.82	0	1471150..1472796	+	548	150393899	-	SaurJH1_1437	-	choline/carnitine/betaine transporter
1420	 44.97	+2	1473265..1473453	+	62	150393900	-	SaurJH1_1438	-	hypothetical protein
1421	 35.51	0	1473743..1476448	+	901	150393901	-	SaurJH1_1439	-	aconitate hydratase
1422	 32.48	0	1476628..1477095	+	155	150393902	-	SaurJH1_1440	-	hypothetical protein
1423	 33.67	0	1477302..1477598	-	98	150393903	-	SaurJH1_1441	-	hypothetical protein
1424	 33.83	0	1477974..1478582	-	202	150393904	-	SaurJH1_1442	-	hypothetical protein
1425	 34.99	0	1478788..1480779	+	663	150393905	-	SaurJH1_1443	-	DNA topoisomerase IV subunit B
1426	 32.25	0	1480779..1483181	+	800	150393906	-	SaurJH1_1444	-	DNA topoisomerase IV subunit A
1427	 35.52	0	1483431..1484891	+	486	150393907	-	SaurJH1_1445	-	amino acid carrier protein
1428	 27.70	-1	1485391..1486242	+	283	150393908	-	SaurJH1_1446	-	CAT RNA-binding domain-containing protein
1429	 29.17	-1	1486217..1486384	+	55	150393909	-	SaurJH1_1447	-	hypothetical protein
1430	 30.69	0	1486377..1487585	+	402	150393910	-	SaurJH1_1448	-	hypothetical protein
1431	 31.35	0	1488066..1490588	+	840	150393911	-	SaurJH1_1449	-	hypothetical protein
1432	 33.92	0	1490791..1491300	-	169	150393912	-	SaurJH1_1450	-	methionine sulfoxide reductase A
1433	 33.33	0	1491437..1492420	+	327	150393913	-	SaurJH1_1451	-	transcription attenuator LytR
1434	 30.48	0	1492410..1492514	+	34	150393914	-	SaurJH1_1452	-	hypothetical protein
1435	 36.51	+1	1492508..1492696	-	62	150393915	-	SaurJH1_1453	-	4-oxalocrotonate tautomerase
1436	 33.57	0	1492841..1494103	+	420	150393916	-	SaurJH1_1454	-	DNA-directed DNA polymerase
1437	 32.88	0	1494240..1495331	-	363	150393917	-	SaurJH1_1455	-	prephenate dehydrogenase
1438	 33.43	0	1495496..1496527	+	343	150393918	-	SaurJH1_1456	-	peptidase M42 family protein
1439	 31.49	0	1497019..1498425	+	468	150393919	-	SaurJH1_1457	-	anthranilate synthase component I
1440	 35.45	0	1498422..1498988	+	188	150393920	-	SaurJH1_1458	-	anthranilate synthase component II
1441	 33.83	0	1498994..1499992	+	332	150393921	-	SaurJH1_1459	-	anthranilate phosphoribosyltransferase
1442	 32.18	0	1499994..1500776	+	260	150393922	-	SaurJH1_1460	-	indole-3-glycerol-phosphate synthase
1443	 31.76	0	1500773..1501408	+	211	150393923	-	SaurJH1_1461	-	phosphoribosylanthranilate isomerase
1444	 37.94	+1	1501401..1502615	+	404	150393924	-	SaurJH1_1462	-	tryptophan synthase subunit beta
1445	 34.16	0	1502608..1503336	+	242	150393925	trpA	SaurJH1_1463	-	tryptophan synthase subunit alpha
1446	 31.99	0	1503658..1504920	+	420	150393926	-	SaurJH1_1464	-	methicillin resistance protein
1447	 31.59	0	1504939..1506198	+	419	150393927	-	SaurJH1_1465	-	methicillin resistance protein
1448	 23.96	-2	1506487..1507233	+	248	150393928	-	SaurJH1_1466	-	hypothetical protein
1449	 31.51	0	1507463..1508230	+	255	150393929	-	SaurJH1_1467	-	Cof-like hydrolase
1450	 32.91	0	1508278..1508751	-	157	150393930	-	SaurJH1_1468	-	zinc finger SWIM domain-containing protein
1451	 32.48	0	1508875..1509576	-	233	150393931	-	SaurJH1_1469	-	ABC transporter related
1452	 31.14	0	1509569..1510342	-	257	150393932	-	SaurJH1_1470	-	ABC transporter related
1453	 32.25	0	1510329..1511159	-	276	150393933	-	SaurJH1_1471	-	binding-protein-dependent transport systems inner membrane component
1454	 31.31	0	1511152..1512138	-	328	150393934	-	SaurJH1_1472	-	binding-protein-dependent transport systems inner membrane component
1455	 27.25	-1	1512442..1512786	-	114	150393935	-	SaurJH1_1473	-	hypothetical protein
1456	 33.44	0	1512991..1514805	+	604	150393936	-	SaurJH1_1474	-	oligoendopeptidase F
1457	 31.93	0	1514945..1515586	-	213	150393937	-	SaurJH1_1475	-	phosphate transport system regulatory protein PhoU
1458	 32.28	0	1515593..1516444	-	283	150393938	-	SaurJH1_1476	-	phosphate ABC transporter, ATPase subunit
1459	 35.40	0	1516491..1517408	-	305	150393939	-	SaurJH1_1477	-	phosphate ABC transporter, inner membrane subunit PstA
1460	 35.71	0	1517410..1518336	-	308	150393940	-	SaurJH1_1478	-	phosphate ABC transporter, inner membrane subunit PstC
1461	 32.01	0	1518527..1519510	-	327	150393941	-	SaurJH1_1479	-	phosphate binding protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.