IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1265	 26.63	-1	1300427..1300918	+	163	150393745	-	SaurJH1_1280	-	lipoprotein signal peptidase
1266	 33.77	0	1300918..1301835	+	305	150393746	-	SaurJH1_1281	-	RluA family pseudouridine synthase
1267	 34.09	0	1302235..1302762	+	175	150393747	-	SaurJH1_1282	-	pyrimidine regulatory protein PyrR
1268	 34.94	0	1302980..1304287	+	435	150393748	-	SaurJH1_1283	-	uracil permease
1269	 31.63	0	1304315..1305196	+	293	150393749	pyrB	SaurJH1_1284	-	aspartate carbamoyltransferase catalytic subunit
1270	 35.92	0	1305211..1306488	+	425	150393750	pyrC	SaurJH1_1285	-	dihydroorotase
1271	 35.33	0	1306490..1307590	+	366	150393751	-	SaurJH1_1286	-	carbamoyl phosphate synthase small subunit
1272	 35.66	0	1307583..1310756	+	1057	150393752	carB	SaurJH1_1287	-	carbamoyl phosphate synthase large subunit
1273	 33.91	0	1310863..1311558	+	231	150393753	-	SaurJH1_1288	-	orotidine 5'-phosphate decarboxylase
1274	 33.01	0	1311558..1312169	+	203	150393754	-	SaurJH1_1289	-	orotate phosphoribosyltransferase
1275	 25.82	-2	1312199..1312411	+	70	150393755	-	SaurJH1_1290	-	hypothetical protein
1276	 33.33	0	1312848..1313249	+	133	150393756	-	SaurJH1_1291	-	hypothetical protein
1277	 31.98	0	1313512..1315209	-	565	150393757	-	SaurJH1_1292	-	fibronectin-binding A domain-containing protein
1278	 33.17	0	1315484..1316107	+	207	150393758	-	SaurJH1_1293	-	guanylate kinase
1279	 32.42	0	1316107..1316325	+	72	150393759	-	SaurJH1_1294	-	DNA-directed RNA polymerase, omega subunit
1280	 34.92	0	1316541..1317740	+	399	150393760	-	SaurJH1_1295	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1281	 34.70	0	1317740..1320148	+	802	150393761	-	SaurJH1_1296	-	primosomal protein N'
1282	 30.92	0	1320654..1321607	+	317	150393762	-	SaurJH1_1297	-	hypothetical protein
1283	 30.82	0	1321770..1322048	-	92	150393763	-	SaurJH1_1298	-	TM2 domain-containing protein
1284	 33.33	0	1322272..1322760	+	162	150393764	-	SaurJH1_1299	-	formylmethionine deformylase
1285	 34.94	0	1322753..1323688	+	311	150393765	-	SaurJH1_1300	-	methionyl-tRNA formyltransferase
1286	 33.10	0	1323685..1324992	+	435	150393766	-	SaurJH1_1301	-	sun protein
1287	 33.88	0	1324995..1326089	+	364	150393767	-	SaurJH1_1302	-	radical SAM protein
1288	 32.39	0	1326096..1326839	+	247	150393768	-	SaurJH1_1303	-	protein phosphatase 2C-like protein
1289	 33.68	0	1326836..1328830	+	664	150393769	-	SaurJH1_1304	-	protein kinase
1290	 31.51	0	1329058..1329933	+	291	150393770	-	SaurJH1_1305	-	hypothetical protein
1291	 32.87	0	1329934..1330578	+	214	150393771	-	SaurJH1_1306	-	ribulose-phosphate 3-epimerase
1292	 32.71	0	1330585..1331226	+	213	150393772	-	SaurJH1_1307	-	hypothetical protein
1293	 37.57	+1	1331607..1331795	-	62	150393773	rpmB	SaurJH1_1308	-	50S ribosomal protein L28
1294	 32.53	0	1332238..1332612	+	124	150393774	-	SaurJH1_1309	-	hypothetical protein
1295	 34.00	0	1332627..1334273	+	548	150393775	-	SaurJH1_1310	-	hypothetical protein
1296	 33.77	0	1334463..1336523	+	686	150393776	-	SaurJH1_1311	-	ATP-dependent DNA helicase RecG
1297	 32.29	0	1336726..1337298	+	190	150393777	-	SaurJH1_1312	-	fatty acid biosynthesis transcriptional regulator
1298	 34.85	0	1337303..1338289	+	328	150393778	-	SaurJH1_1313	-	putative glycerol-3-phosphate acyltransferase PlsX
1299	 33.66	0	1338282..1339208	+	308	150393779	-	SaurJH1_1314	-	malonyl CoA-acyl carrier protein transacylase
1300	 36.57	+1	1339195..1339935	+	246	150393780	-	SaurJH1_1315	-	3-oxoacyl-(acyl-carrier-protein) reductase
1301	 34.19	0	1340370..1340603	+	77	150393781	-	SaurJH1_1316	-	acyl carrier protein
1302	 34.02	0	1340719..1341450	+	243	150393782	-	SaurJH1_1317	-	ribonuclease III
1303	 32.30	0	1341597..1345163	+	1188	150393783	-	SaurJH1_1318	-	chromosome segregation protein SMC
1304	 34.77	0	1345163..1346413	+	416	150393784	-	SaurJH1_1319	-	signal recognition particle-docking protein FtsY
1305	 27.63	-1	1346400..1346732	+	110	150393785	-	SaurJH1_1320	-	hypothetical protein
1306	 34.65	0	1346758..1348125	+	455	150393786	-	SaurJH1_1321	-	signal recognition particle protein
1307	 36.23	0	1348560..1348835	+	91	150393787	rpsP	SaurJH1_1322	-	30S ribosomal protein S16
1308	 31.75	0	1349023..1349526	+	167	150393788	-	SaurJH1_1323	-	16S rRNA processing protein RimM
1309	 35.50	0	1349526..1350263	+	245	150393789	-	SaurJH1_1324	-	tRNA (guanine-N1)-methyltransferase
1310	 39.03	+1	1350366..1350716	+	116	150393790	rplS	SaurJH1_1325	-	50S ribosomal protein L19
1311	 29.80	0	1350960..1353566	-	868	150393791	-	SaurJH1_1326	-	hypothetical protein
1312	 33.11	0	1353967..1354851	+	294	150393792	rbgA	SaurJH1_1327	-	ribosomal biogenesis GTPase
1313	 35.03	0	1354835..1355602	+	255	150393793	-	SaurJH1_1328	-	ribonuclease H
1314	 35.39	0	1355711..1356877	+	388	150393794	sucC	SaurJH1_1329	-	succinyl-CoA synthetase subunit beta
1315	 38.17	+1	1356899..1357807	+	302	150393795	-	SaurJH1_1330	-	succinyl-CoA synthetase subunit alpha
1316	 29.13	-1	1358034..1359152	+	372	150393796	-	SaurJH1_1331	-	CHAP domain-containing protein
1317	 25.86	-2	1359180..1360424	+	414	150393797	-	SaurJH1_1332	-	methicillin resistance protein
1318	 35.12	0	1361645..1363720	+	691	150393798	-	SaurJH1_1335	-	DNA topoisomerase I
1319	 35.55	0	1363876..1365183	+	435	150393799	-	SaurJH1_1336	-	tRNA (uracil-5-)-methyltransferase Gid
1320	 32.11	0	1365601..1366497	+	298	150393800	-	SaurJH1_1337	-	tyrosine recombinase XerC
1321	 39.38	+1	1366494..1367039	+	181	150393801	-	SaurJH1_1338	-	ATP-dependent protease peptidase subunit
1322	 34.90	0	1367105..1368508	+	467	150393802	hslU	SaurJH1_1339	-	ATP-dependent protease ATP-binding subunit
1323	 31.91	0	1368533..1369306	+	257	150393803	-	SaurJH1_1340	-	transcriptional repressor CodY
1324	 35.16	0	1369653..1370420	+	255	150393804	rpsB	SaurJH1_1341	-	30S ribosomal protein S2
1325	 26.32	-1	1370454..1370567	+	37	150393805	-	SaurJH1_1342	-	hypothetical protein
1326	 36.51	+1	1370602..1371483	+	293	150393806	tsf	SaurJH1_1343	-	elongation factor Ts
1327	 36.38	0	1371620..1372342	+	240	150393807	-	SaurJH1_1344	-	uridylate kinase
1328	 34.95	0	1372361..1372915	+	184	150393808	-	SaurJH1_1345	-	ribosome recycling factor
1329	 29.96	0	1373288..1374058	+	256	150393809	-	SaurJH1_1346	-	undecaprenyl diphosphate synthase
1330	 32.44	0	1374065..1374847	+	260	150393810	-	SaurJH1_1347	-	phosphatidate cytidylyltransferase
1331	 33.26	0	1375059..1376345	+	428	150393811	-	SaurJH1_1348	-	putative membrane-associated zinc metalloprotease
1332	 34.98	0	1376365..1378068	+	567	150393812	-	SaurJH1_1349	-	prolyl-tRNA synthetase
1333	 34.89	0	1378326..1382642	+	1438	150393813	-	SaurJH1_1350	-	DNA polymerase III PolC
1334	 32.69	0	1382932..1383399	+	155	150393814	-	SaurJH1_1351	-	hypothetical protein
1335	 35.46	0	1383420..1384595	+	391	150393815	nusA	SaurJH1_1352	-	transcription elongation factor NusA
1336	 30.18	0	1384616..1384900	+	94	150393816	-	SaurJH1_1353	-	hypothetical protein
1337	 32.39	0	1384897..1385214	+	105	150393817	-	SaurJH1_1354	-	ribosomal protein L7Ae/L30e/S12e/Gadd45
1338	 34.14	0	1385219..1387336	+	705	150393818	infB	SaurJH1_1355	-	translation initiation factor IF-2
1339	 30.48	0	1387722..1388072	+	116	150393819	rbfA	SaurJH1_1356	-	ribosome-binding factor A
1340	 32.24	0	1388241..1389158	+	305	150393820	-	SaurJH1_1357	-	tRNA pseudouridine synthase B
1341	 32.92	0	1389173..1390144	+	323	150393821	-	SaurJH1_1358	-	riboflavin biosynthesis protein RibF
1342	 35.93	0	1390259..1390528	+	89	150393822	rpsO	SaurJH1_1359	-	30S ribosomal protein S15
1343	 37.29	+1	1390897..1392993	+	698	150393823	-	SaurJH1_1360	-	polynucleotide phosphorylase/polyadenylase
1344	 33.62	0	1393178..1394902	+	574	150393824	-	SaurJH1_1361	-	beta-lactamase domain-containing protein
1345	 33.59	0	1395159..1397525	+	788	150393825	-	SaurJH1_1362	-	cell division protein FtsK/SpoIIIE
1346	 31.37	0	1397530..1398243	+	237	150393826	-	SaurJH1_1363	-	UbiC transcription regulator-associated domain-containing protein
1347	 29.70	0	1398274..1399539	+	421	150393827	-	SaurJH1_1364	-	peptidase M16 domain-containing protein
1348	 31.00	0	1399539..1400825	+	428	150393828	-	SaurJH1_1365	-	peptidase M16 domain-containing protein
1349	 34.04	0	1400825..1401529	+	234	150393829	-	SaurJH1_1366	-	short-chain dehydrogenase/reductase SDR
1350	 33.33	0	1401634..1402461	+	275	150393830	-	SaurJH1_1367	-	amino acid-binding ACT domain-containing protein
1351	 30.53	0	1402480..1402872	+	130	150393831	-	SaurJH1_1368	-	helix-turn-helix domain-containing protein
1352	 30.57	0	1402906..1403484	+	192	150393832	-	SaurJH1_1369	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1353	 30.73	0	1403708..1404859	+	383	150393833	-	SaurJH1_1370	-	competence/damage-inducible protein CinA
1354	 36.97	+1	1405024..1406067	+	347	150393834	recA	SaurJH1_1371	-	recombinase A
1355	 35.90	0	1406421..1407980	+	519	150393835	-	SaurJH1_1372	-	phosphodiesterase
1356	 27.31	-1	1408277..1408492	-	71	150393836	-	SaurJH1_1373	-	hypothetical protein
1357	 34.59	0	1408666..1409463	+	265	150393837	-	SaurJH1_1374	-	hypothetical protein
1358	 35.21	0	1409603..1411363	+	586	150393838	-	SaurJH1_1375	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1359	 34.03	0	1411364..1412230	+	288	150393839	-	SaurJH1_1376	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1360	 30.61	0	1412324..1412617	+	97	150393840	-	SaurJH1_1377	-	hypothetical protein
1361	 32.82	0	1412751..1414295	+	514	150393841	-	SaurJH1_1378	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1362	 29.78	0	1414296..1414661	+	121	150393842	-	SaurJH1_1379	-	hypothetical protein
1363	 34.15	0	1414688..1415179	+	163	150393843	-	SaurJH1_1380	-	hypothetical protein
1364	 32.19	0	1415482..1418100	+	872	150393844	-	SaurJH1_1381	-	DNA mismatch repair protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.