IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1203	 31.17	0	1236938..1237261	+	107	150393683	-	SaurJH1_1217	-	heme-degrading monooxygenase IsdG
1204	 35.22	0	1237645..1238385	+	246	150393684	-	SaurJH1_1218	-	tRNA/rRNA methyltransferase (SpoU)
1205	 34.75	0	1238765..1239823	+	352	150393685	pheS	SaurJH1_1219	-	phenylalanyl-tRNA synthetase subunit alpha
1206	 34.91	0	1239823..1242225	+	800	150393686	-	SaurJH1_1220	-	phenylalanyl-tRNA synthetase, beta subunit
1207	 32.91	0	1242657..1243595	-	312	150393687	-	SaurJH1_1221	-	ribonuclease HIII
1208	 32.58	0	1243965..1244231	+	88	150393688	-	SaurJH1_1222	-	hypothetical protein
1209	 28.54	-1	1244232..1244753	+	173	150393689	-	SaurJH1_1223	-	hypothetical protein
1210	 32.46	0	1244826..1246538	+	570	150393690	-	SaurJH1_1224	-	hypothetical protein
1211	 32.87	0	1246548..1248896	+	782	150393691	-	SaurJH1_1225	-	recombination and DNA strand exchange inhibitor protein
1212	 33.97	0	1249069..1249383	+	104	150393692	-	SaurJH1_1226	-	thioredoxin
1213	 33.11	0	1249707..1251488	+	593	150393693	uvrC	SaurJH1_1227	-	excinuclease ABC subunit C
1214	 32.03	0	1251812..1252426	+	204	150393694	-	SaurJH1_1228	-	succinate dehydrogenase/fumarate reductase cytochrome b subunit
1215	 38.43	+1	1252478..1254244	+	588	150393695	sdhA	SaurJH1_1229	-	succinate dehydrogenase flavoprotein subunit
1216	 35.29	0	1254244..1255059	+	271	150393696	sdhB	SaurJH1_1230	-	succinate dehydrogenase iron-sulfur subunit
1217	 36.33	0	1255295..1256095	+	266	150393697	-	SaurJH1_1231	-	glutamate racemase
1218	 32.82	0	1256107..1256694	+	195	150393698	-	SaurJH1_1232	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
1219	 31.35	0	1256687..1257190	+	167	150393699	-	SaurJH1_1233	-	phosphodiesterase
1220	 23.21	-2	1257318..1257485	+	55	150393700	-	SaurJH1_1234	-	hypothetical protein
1221	 29.09	-1	1257679..1258008	+	109	150393701	-	SaurJH1_1235	-	hypothetical protein
1222	 31.62	0	1258170..1258286	+	38	150393702	-	SaurJH1_1236	-	hypothetical protein
1223	 31.09	0	1258377..1258778	-	133	150393703	-	SaurJH1_1237	-	formyl peptide receptor-like 1 inhibitory protein
1224	 26.63	-1	1259448..1259954	+	168	150393704	-	SaurJH1_1238	-	hypothetical protein
1225	 31.53	0	1260214..1260711	+	165	150393705	-	SaurJH1_1239	-	hypothetical protein
1226	 28.77	-1	1260861..1261211	+	116	150393706	-	SaurJH1_1240	-	hypothetical protein
1227	 48.56	+2	1261528..1261770	+	80	150393707	-	SaurJH1_1241	-	hypothetical protein
1228	 27.96	-1	1261977..1262162	-	61	150393708	-	SaurJH1_1242	-	hypothetical protein
1229	 25.57	-2	1262372..1262590	-	72	150393709	-	SaurJH1_1243	-	hypothetical protein
1230	 29.91	0	1262784..1263017	-	77	150393710	-	SaurJH1_1244	-	hypothetical protein
1231	 30.91	0	1263536..1264855	+	439	150393711	-	SaurJH1_1245	-	transposase IS204/IS1001/IS1096/IS1165 family protein
1232	 34.17	0	1265014..1265973	-	319	150393712	-	SaurJH1_1246	-	beta-channel forming cytolysin
1233	 23.13	-2	1266646..1266792	+	48	150393713	-	SaurJH1_1247	-	hypothetical protein
1234	 27.78	-1	1266776..1266973	+	65	150393714	-	SaurJH1_1248	-	hypothetical protein
1235	 30.82	0	1267463..1268179	-	238	150393715	-	SaurJH1_1249	-	superantigen-like protein
1236	 29.06	-1	1268287..1269012	-	241	150393716	-	SaurJH1_1250	-	superantigen-like protein
1237	 30.72	0	1269107..1269832	-	241	150393717	-	SaurJH1_1251	-	superantigen-like protein
1238	 33.73	0	1270270..1271271	+	333	150393718	-	SaurJH1_1252	-	ornithine carbamoyltransferase
1239	 33.55	0	1271291..1272226	+	311	150393719	-	SaurJH1_1253	-	carbamate kinase
1240	 35.84	0	1272398..1273954	+	518	150393720	-	SaurJH1_1254	-	hypothetical protein
1241	 28.95	-1	1274261..1274488	+	75	150393721	-	SaurJH1_1255	-	hypothetical protein
1242	 31.65	0	1274794..1275741	-	315	150393722	-	SaurJH1_1256	-	C4-dicarboxylate transporter/malic acid transport protein
1243	 34.81	0	1277083..1277217	+	44	150393723	-	SaurJH1_1257	-	haemolytic family protein
1244	 40.00	+2	1277274..1277408	+	44	150393724	-	SaurJH1_1258	-	haemolytic family protein
1245	 30.17	0	1277532..1278227	+	231	150393725	-	SaurJH1_1259	-	HAD family hydrolase
1246	 32.43	0	1278336..1278776	-	146	150393726	-	SaurJH1_1260	-	hypothetical protein
1247	 32.28	0	1278971..1280584	+	537	150393727	-	SaurJH1_1261	-	hypothetical protein
1248	 33.80	0	1280728..1281159	+	143	150393728	-	SaurJH1_1262	-	cell division protein MraZ
1249	 36.00	0	1281175..1282110	+	311	150393729	-	SaurJH1_1263	-	S-adenosyl-methyltransferase MraW
1250	 32.09	0	1282124..1282525	+	133	150393730	-	SaurJH1_1264	-	cell division protein
1251	 34.54	0	1282506..1284740	+	744	150393731	-	SaurJH1_1265	-	penicillin-binding protein 1
1252	 32.30	0	1285032..1285997	+	321	150393732	-	SaurJH1_1266	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1253	 32.59	0	1285999..1287348	+	449	150393733	murD	SaurJH1_1267	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1254	 31.06	0	1287364..1288683	+	439	150393734	-	SaurJH1_1268	-	cell division protein FtsQ
1255	 32.13	0	1288789..1290201	+	470	150393735	-	SaurJH1_1269	-	cell division protein FtsA
1256	 38.53	+1	1290234..1291406	+	390	150393736	-	SaurJH1_1270	-	cell division protein FtsZ
1257	 31.82	0	1291666..1292457	+	263	150393737	-	SaurJH1_1271	-	hypothetical protein
1258	 32.88	0	1292481..1293149	+	222	150393738	-	SaurJH1_1272	-	alanine racemase domain-containing protein
1259	 35.11	0	1293146..1293709	+	187	150393739	-	SaurJH1_1273	-	hypothetical protein
1260	 26.80	-1	1293721..1294011	+	96	150393740	-	SaurJH1_1274	-	hypothetical protein
1261	 30.73	0	1294094..1294900	+	268	150393741	-	SaurJH1_1275	-	RNA-binding S4 domain-containing protein
1262	 34.79	0	1294924..1295541	+	205	150393742	-	SaurJH1_1276	-	hypothetical protein
1263	 35.11	0	1295762..1298515	+	917	150393743	ileS	SaurJH1_1277	-	isoleucyl-tRNA synthetase
1264	 32.08	0	1298806..1299603	+	265	150393744	-	SaurJH1_1278	-	glyoxalase/bleomycin resistance protein/dioxygenase
1265	 26.63	-1	1300427..1300918	+	163	150393745	-	SaurJH1_1280	-	lipoprotein signal peptidase
1266	 33.77	0	1300918..1301835	+	305	150393746	-	SaurJH1_1281	-	RluA family pseudouridine synthase
1267	 34.09	0	1302235..1302762	+	175	150393747	-	SaurJH1_1282	-	pyrimidine regulatory protein PyrR
1268	 34.94	0	1302980..1304287	+	435	150393748	-	SaurJH1_1283	-	uracil permease
1269	 31.63	0	1304315..1305196	+	293	150393749	pyrB	SaurJH1_1284	-	aspartate carbamoyltransferase catalytic subunit
1270	 35.92	0	1305211..1306488	+	425	150393750	pyrC	SaurJH1_1285	-	dihydroorotase
1271	 35.33	0	1306490..1307590	+	366	150393751	-	SaurJH1_1286	-	carbamoyl phosphate synthase small subunit
1272	 35.66	0	1307583..1310756	+	1057	150393752	carB	SaurJH1_1287	-	carbamoyl phosphate synthase large subunit
1273	 33.91	0	1310863..1311558	+	231	150393753	-	SaurJH1_1288	-	orotidine 5'-phosphate decarboxylase
1274	 33.01	0	1311558..1312169	+	203	150393754	-	SaurJH1_1289	-	orotate phosphoribosyltransferase
1275	 25.82	-2	1312199..1312411	+	70	150393755	-	SaurJH1_1290	-	hypothetical protein
1276	 33.33	0	1312848..1313249	+	133	150393756	-	SaurJH1_1291	-	hypothetical protein
1277	 31.98	0	1313512..1315209	-	565	150393757	-	SaurJH1_1292	-	fibronectin-binding A domain-containing protein
1278	 33.17	0	1315484..1316107	+	207	150393758	-	SaurJH1_1293	-	guanylate kinase
1279	 32.42	0	1316107..1316325	+	72	150393759	-	SaurJH1_1294	-	DNA-directed RNA polymerase, omega subunit
1280	 34.92	0	1316541..1317740	+	399	150393760	-	SaurJH1_1295	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1281	 34.70	0	1317740..1320148	+	802	150393761	-	SaurJH1_1296	-	primosomal protein N'
1282	 30.92	0	1320654..1321607	+	317	150393762	-	SaurJH1_1297	-	hypothetical protein
1283	 30.82	0	1321770..1322048	-	92	150393763	-	SaurJH1_1298	-	TM2 domain-containing protein
1284	 33.33	0	1322272..1322760	+	162	150393764	-	SaurJH1_1299	-	formylmethionine deformylase
1285	 34.94	0	1322753..1323688	+	311	150393765	-	SaurJH1_1300	-	methionyl-tRNA formyltransferase
1286	 33.10	0	1323685..1324992	+	435	150393766	-	SaurJH1_1301	-	sun protein
1287	 33.88	0	1324995..1326089	+	364	150393767	-	SaurJH1_1302	-	radical SAM protein
1288	 32.39	0	1326096..1326839	+	247	150393768	-	SaurJH1_1303	-	protein phosphatase 2C-like protein
1289	 33.68	0	1326836..1328830	+	664	150393769	-	SaurJH1_1304	-	protein kinase
1290	 31.51	0	1329058..1329933	+	291	150393770	-	SaurJH1_1305	-	hypothetical protein
1291	 32.87	0	1329934..1330578	+	214	150393771	-	SaurJH1_1306	-	ribulose-phosphate 3-epimerase
1292	 32.71	0	1330585..1331226	+	213	150393772	-	SaurJH1_1307	-	hypothetical protein
1293	 37.57	+1	1331607..1331795	-	62	150393773	rpmB	SaurJH1_1308	-	50S ribosomal protein L28
1294	 32.53	0	1332238..1332612	+	124	150393774	-	SaurJH1_1309	-	hypothetical protein
1295	 34.00	0	1332627..1334273	+	548	150393775	-	SaurJH1_1310	-	hypothetical protein
1296	 33.77	0	1334463..1336523	+	686	150393776	-	SaurJH1_1311	-	ATP-dependent DNA helicase RecG
1297	 32.29	0	1336726..1337298	+	190	150393777	-	SaurJH1_1312	-	fatty acid biosynthesis transcriptional regulator
1298	 34.85	0	1337303..1338289	+	328	150393778	-	SaurJH1_1313	-	putative glycerol-3-phosphate acyltransferase PlsX
1299	 33.66	0	1338282..1339208	+	308	150393779	-	SaurJH1_1314	-	malonyl CoA-acyl carrier protein transacylase
1300	 36.57	+1	1339195..1339935	+	246	150393780	-	SaurJH1_1315	-	3-oxoacyl-(acyl-carrier-protein) reductase
1301	 34.19	0	1340370..1340603	+	77	150393781	-	SaurJH1_1316	-	acyl carrier protein
1302	 34.02	0	1340719..1341450	+	243	150393782	-	SaurJH1_1317	-	ribonuclease III
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.