IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1151	 34.83	0	1185111..1185377	+	88	150393631	-	SaurJH1_1165	-	phosphocarrier protein HPr
1152	 35.14	0	1185380..1187098	+	572	150393632	-	SaurJH1_1166	-	phosphoenolpyruvate-protein phosphotransferase
1153	 28.63	-1	1187335..1187568	-	77	150393633	-	SaurJH1_1167	-	glutaredoxin
1154	 33.92	0	1187766..1189127	+	453	150393634	-	SaurJH1_1168	-	cytochrome bd ubiquinol oxidase subunit I
1155	 30.49	0	1189124..1190143	+	339	150393635	-	SaurJH1_1169	-	cytochrome d ubiquinol oxidase subunit II
1156	 35.14	0	1190276..1190938	+	220	150393636	-	SaurJH1_1170	-	TrkA domain-containing protein
1157	 33.86	0	1191184..1192881	-	565	150393637	-	SaurJH1_1171	-	beta-lactamase domain-containing protein
1158	 31.51	0	1192881..1193099	-	72	150393638	-	SaurJH1_1172	-	hypothetical protein
1159	 34.96	0	1193581..1194132	-	183	150393639	def	SaurJH1_1173	-	peptide deformylase
1160	 29.19	-1	1194497..1195123	+	208	150393640	-	SaurJH1_1174	-	hypothetical protein
1161	 37.29	+1	1195294..1196406	+	370	150393641	-	SaurJH1_1175	-	pyruvate dehydrogenase (acetyl-transferring)
1162	 38.34	+1	1196410..1197387	+	325	150393642	-	SaurJH1_1176	-	transketolase domain-containing protein
1163	 38.05	+1	1197478..1198770	+	430	150393643	-	SaurJH1_1177	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1164	 36.96	+1	1198774..1200180	+	468	150393644	-	SaurJH1_1178	-	dihydrolipoamide dehydrogenase
1165	 32.25	0	1200348..1200623	+	91	150393645	-	SaurJH1_1179	-	hypothetical protein
1166	 29.81	0	1200767..1201306	+	179	150393646	-	SaurJH1_1180	-	helix-turn-helix domain-containing protein
1167	 30.96	0	1201319..1202413	+	364	150393647	-	SaurJH1_1181	-	ABC transporter related
1168	 27.32	-1	1202406..1203203	+	265	150393648	-	SaurJH1_1182	-	binding-protein-dependent transport systems inner membrane component
1169	 30.25	0	1203209..1204018	+	269	150393649	-	SaurJH1_1183	-	binding-protein-dependent transport systems inner membrane component
1170	 31.47	0	1204018..1205091	+	357	150393650	-	SaurJH1_1184	-	extracellular solute-binding protein
1171	 31.67	0	1205165..1206184	+	339	150393651	-	SaurJH1_1185	-	hypothetical protein
1172	 29.29	-1	1206467..1206886	+	139	150393652	-	SaurJH1_1186	-	hypothetical protein
1173	 32.22	0	1206965..1208317	-	450	150393653	-	SaurJH1_1187	-	Mn2+/Fe2+ transporter
1174	 32.85	0	1208501..1209115	-	204	150393654	-	SaurJH1_1188	-	hypothetical protein
1175	 34.63	0	1209254..1210099	+	281	150393655	-	SaurJH1_1189	-	inositol-phosphate phosphatase
1176	 26.56	-1	1210253..1210444	-	63	150393656	-	SaurJH1_1190	-	hypothetical protein
1177	 35.06	0	1210546..1212393	+	615	150393657	-	SaurJH1_1191	-	GTP-binding protein TypA
1178	 36.90	+1	1212533..1212700	-	55	150393658	-	SaurJH1_1192	-	hypothetical protein
1179	 31.88	0	1212702..1213184	-	160	150393659	-	SaurJH1_1193	-	hypothetical protein
1180	 31.52	0	1213325..1213600	+	91	150393660	-	SaurJH1_1194	-	hypothetical protein
1181	 31.15	0	1213902..1215140	+	412	150393661	-	SaurJH1_1195	-	cell cycle protein
1182	 35.48	0	1215694..1219146	+	1150	150393662	-	SaurJH1_1196	-	pyruvate carboxylase
1183	 33.52	0	1219286..1220356	-	356	150393663	-	SaurJH1_1197	-	cytochrome oxidase assembly
1184	 32.02	0	1220637..1221548	+	303	150393664	-	SaurJH1_1198	-	protoheme IX farnesyltransferase
1185	 32.47	0	1221573..1222034	+	153	150393665	-	SaurJH1_1199	-	hypothetical protein
1186	 30.06	0	1222361..1223398	+	345	150393666	-	SaurJH1_1200	-	hypothetical protein
1187	 35.17	0	1223414..1223848	+	144	150393667	-	SaurJH1_1201	-	hypothetical protein
1188	 36.03	0	1223911..1224837	-	308	150393668	-	SaurJH1_1202	-	glycerophosphoryl diester phosphodiesterase
1189	 27.45	-1	1225076..1225330	+	84	150393669	-	SaurJH1_1203	-	hypothetical protein
1190	 29.74	0	1225333..1225722	-	129	150393670	-	SaurJH1_1204	-	hypothetical protein
1191	 31.68	0	1225792..1226334	+	180	150393671	-	SaurJH1_1205	-	putative methyltransferase
1192	 30.85	0	1226336..1226818	+	160	150393672	-	SaurJH1_1206	-	pantetheine-phosphate adenylyltransferase
1193	 32.19	0	1226880..1228019	-	379	150393673	-	SaurJH1_1207	-	hypothetical protein
1194	 33.87	0	1228146..1228703	+	185	150393674	-	SaurJH1_1208	-	hypothetical protein
1195	 36.78	+1	1228783..1228956	+	57	150393675	rpmF	SaurJH1_1209	-	50S ribosomal protein L32
1196	 32.82	0	1229110..1231047	-	645	150393676	-	SaurJH1_1210	-	cell wall anchor domain-containing protein
1197	 33.52	0	1231250..1232302	-	350	150393677	-	SaurJH1_1211	-	cell wall anchor domain-containing protein
1198	 32.02	0	1232511..1233194	+	227	150393678	-	SaurJH1_1212	-	NEAr transporter
1199	 28.51	-1	1233194..1234270	+	358	150393679	-	SaurJH1_1213	-	hypothetical protein
1200	 30.94	0	1234267..1235145	+	292	150393680	-	SaurJH1_1214	-	periplasmic binding protein
1201	 32.71	0	1235155..1236123	+	322	150393681	-	SaurJH1_1215	-	transport system permease protein
1202	 26.94	-1	1236185..1236919	+	244	150393682	-	SaurJH1_1216	-	peptidase C60B sortase B
1203	 31.17	0	1236938..1237261	+	107	150393683	-	SaurJH1_1217	-	heme-degrading monooxygenase IsdG
1204	 35.22	0	1237645..1238385	+	246	150393684	-	SaurJH1_1218	-	tRNA/rRNA methyltransferase (SpoU)
1205	 34.75	0	1238765..1239823	+	352	150393685	pheS	SaurJH1_1219	-	phenylalanyl-tRNA synthetase subunit alpha
1206	 34.91	0	1239823..1242225	+	800	150393686	-	SaurJH1_1220	-	phenylalanyl-tRNA synthetase, beta subunit
1207	 32.91	0	1242657..1243595	-	312	150393687	-	SaurJH1_1221	-	ribonuclease HIII
1208	 32.58	0	1243965..1244231	+	88	150393688	-	SaurJH1_1222	-	hypothetical protein
1209	 28.54	-1	1244232..1244753	+	173	150393689	-	SaurJH1_1223	-	hypothetical protein
1210	 32.46	0	1244826..1246538	+	570	150393690	-	SaurJH1_1224	-	hypothetical protein
1211	 32.87	0	1246548..1248896	+	782	150393691	-	SaurJH1_1225	-	recombination and DNA strand exchange inhibitor protein
1212	 33.97	0	1249069..1249383	+	104	150393692	-	SaurJH1_1226	-	thioredoxin
1213	 33.11	0	1249707..1251488	+	593	150393693	uvrC	SaurJH1_1227	-	excinuclease ABC subunit C
1214	 32.03	0	1251812..1252426	+	204	150393694	-	SaurJH1_1228	-	succinate dehydrogenase/fumarate reductase cytochrome b subunit
1215	 38.43	+1	1252478..1254244	+	588	150393695	sdhA	SaurJH1_1229	-	succinate dehydrogenase flavoprotein subunit
1216	 35.29	0	1254244..1255059	+	271	150393696	sdhB	SaurJH1_1230	-	succinate dehydrogenase iron-sulfur subunit
1217	 36.33	0	1255295..1256095	+	266	150393697	-	SaurJH1_1231	-	glutamate racemase
1218	 32.82	0	1256107..1256694	+	195	150393698	-	SaurJH1_1232	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
1219	 31.35	0	1256687..1257190	+	167	150393699	-	SaurJH1_1233	-	phosphodiesterase
1220	 23.21	-2	1257318..1257485	+	55	150393700	-	SaurJH1_1234	-	hypothetical protein
1221	 29.09	-1	1257679..1258008	+	109	150393701	-	SaurJH1_1235	-	hypothetical protein
1222	 31.62	0	1258170..1258286	+	38	150393702	-	SaurJH1_1236	-	hypothetical protein
1223	 31.09	0	1258377..1258778	-	133	150393703	-	SaurJH1_1237	-	formyl peptide receptor-like 1 inhibitory protein
1224	 26.63	-1	1259448..1259954	+	168	150393704	-	SaurJH1_1238	-	hypothetical protein
1225	 31.53	0	1260214..1260711	+	165	150393705	-	SaurJH1_1239	-	hypothetical protein
1226	 28.77	-1	1260861..1261211	+	116	150393706	-	SaurJH1_1240	-	hypothetical protein
1227	 48.56	+2	1261528..1261770	+	80	150393707	-	SaurJH1_1241	-	hypothetical protein
1228	 27.96	-1	1261977..1262162	-	61	150393708	-	SaurJH1_1242	-	hypothetical protein
1229	 25.57	-2	1262372..1262590	-	72	150393709	-	SaurJH1_1243	-	hypothetical protein
1230	 29.91	0	1262784..1263017	-	77	150393710	-	SaurJH1_1244	-	hypothetical protein
1231	 30.91	0	1263536..1264855	+	439	150393711	-	SaurJH1_1245	-	transposase IS204/IS1001/IS1096/IS1165 family protein
1232	 34.17	0	1265014..1265973	-	319	150393712	-	SaurJH1_1246	-	beta-channel forming cytolysin
1233	 23.13	-2	1266646..1266792	+	48	150393713	-	SaurJH1_1247	-	hypothetical protein
1234	 27.78	-1	1266776..1266973	+	65	150393714	-	SaurJH1_1248	-	hypothetical protein
1235	 30.82	0	1267463..1268179	-	238	150393715	-	SaurJH1_1249	-	superantigen-like protein
1236	 29.06	-1	1268287..1269012	-	241	150393716	-	SaurJH1_1250	-	superantigen-like protein
1237	 30.72	0	1269107..1269832	-	241	150393717	-	SaurJH1_1251	-	superantigen-like protein
1238	 33.73	0	1270270..1271271	+	333	150393718	-	SaurJH1_1252	-	ornithine carbamoyltransferase
1239	 33.55	0	1271291..1272226	+	311	150393719	-	SaurJH1_1253	-	carbamate kinase
1240	 35.84	0	1272398..1273954	+	518	150393720	-	SaurJH1_1254	-	hypothetical protein
1241	 28.95	-1	1274261..1274488	+	75	150393721	-	SaurJH1_1255	-	hypothetical protein
1242	 31.65	0	1274794..1275741	-	315	150393722	-	SaurJH1_1256	-	C4-dicarboxylate transporter/malic acid transport protein
1243	 34.81	0	1277083..1277217	+	44	150393723	-	SaurJH1_1257	-	haemolytic family protein
1244	 40.00	+2	1277274..1277408	+	44	150393724	-	SaurJH1_1258	-	haemolytic family protein
1245	 30.17	0	1277532..1278227	+	231	150393725	-	SaurJH1_1259	-	HAD family hydrolase
1246	 32.43	0	1278336..1278776	-	146	150393726	-	SaurJH1_1260	-	hypothetical protein
1247	 32.28	0	1278971..1280584	+	537	150393727	-	SaurJH1_1261	-	hypothetical protein
1248	 33.80	0	1280728..1281159	+	143	150393728	-	SaurJH1_1262	-	cell division protein MraZ
1249	 36.00	0	1281175..1282110	+	311	150393729	-	SaurJH1_1263	-	S-adenosyl-methyltransferase MraW
1250	 32.09	0	1282124..1282525	+	133	150393730	-	SaurJH1_1264	-	cell division protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.