IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.01   STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1117	 32.12	0	1147719..1148873	-	384	150393597	-	SaurJH1_1131	-	aminotransferase class I and II
1118	 27.30	-1	1149069..1150079	-	336	150393598	-	SaurJH1_1132	-	acyltransferase 3
1119	 31.43	0	1150232..1150651	+	139	150393599	-	SaurJH1_1133	-	regulatory protein MarR
1120	 32.43	0	1150678..1150788	+	36	150393600	-	SaurJH1_1134	-	hypothetical protein
1121	 34.93	0	1150858..1154604	-	1248	150393601	-	SaurJH1_1135	-	N-acetylmuramoyl-L-alanine amidase
1122	 34.71	0	1154832..1155266	-	144	150393602	-	SaurJH1_1136	-	GCN5-related N-acetyltransferase
1123	 30.79	0	1155421..1155891	-	156	150393603	-	SaurJH1_1137	-	hypothetical protein
1124	 32.59	0	1155939..1157156	-	405	150393604	-	SaurJH1_1138	-	transcription attenuator LytR
1125	 28.39	-1	1157607..1158800	+	397	150393605	-	SaurJH1_1139	-	beta-lactamase
1126	 35.40	0	1159337..1159627	-	96	150393606	-	SaurJH1_1140	-	cytochrome aa3 quinol oxidase subunit IV
1127	 35.97	0	1159624..1160229	-	201	150393607	-	SaurJH1_1141	-	cytochrome aa3 quinol oxidase subunit III
1128	 36.90	+1	1160219..1162207	-	662	150393608	-	SaurJH1_1142	-	cytochrome aa3 quinol oxidase subunit I
1129	 34.42	0	1162207..1163307	-	366	150393609	-	SaurJH1_1143	-	quinol oxidase AA3, subunit II
1130	 32.39	0	1163878..1164195	-	105	150393610	-	SaurJH1_1144	-	hypothetical protein
1131	 34.26	0	1165059..1165919	-	286	150393611	-	SaurJH1_1145	-	methylenetetrahydrofolate dehydrogenase (NADP(+))
1132	 38.10	+1	1166120..1166602	+	160	150393612	-	SaurJH1_1146	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1133	 32.98	0	1166589..1167713	+	374	150393613	-	SaurJH1_1147	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1134	 28.94	-1	1167717..1168421	+	234	150393614	-	SaurJH1_1148	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1135	 32.58	0	1168421..1168684	+	87	150393615	-	SaurJH1_1149	-	phosphoribosylformylglycinamidine synthase, purS
1136	 34.82	0	1168686..1169357	+	223	150393616	-	SaurJH1_1150	-	phosphoribosylformylglycinamidine synthase I
1137	 34.93	0	1169350..1171539	+	729	150393617	-	SaurJH1_1151	-	phosphoribosylformylglycinamidine synthase II
1138	 35.82	0	1171518..1173002	+	494	150393618	-	SaurJH1_1152	-	amidophosphoribosyltransferase
1139	 35.67	0	1172995..1174023	+	342	150393619	-	SaurJH1_1153	-	phosphoribosylaminoimidazole synthetase
1140	 32.10	0	1174026..1174592	+	188	150393620	-	SaurJH1_1154	-	phosphoribosylglycinamide formyltransferase
1141	 34.69	0	1174607..1176085	+	492	150393621	-	SaurJH1_1155	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1142	 35.50	0	1176107..1177354	+	415	150393622	-	SaurJH1_1156	-	phosphoribosylamine--glycine ligase
1143	 30.86	0	1177621..1178427	-	268	150393623	-	SaurJH1_1157	-	cobalt transport protein
1144	 33.26	0	1178420..1179820	-	466	150393624	-	SaurJH1_1158	-	ABC transporter related
1145	 37.15	+1	1179835..1180410	-	191	150393625	-	SaurJH1_1159	-	hypothetical protein
1146	 22.22	-2	1181183..1181317	-	44	150393626	-	SaurJH1_1160	-	hypothetical protein
1147	 29.09	-1	1181469..1182764	+	431	150393627	-	SaurJH1_1161	-	hypothetical protein
1148	 25.49	-2	1182785..1182988	-	67	150393628	-	SaurJH1_1162	-	hypothetical protein
1149	 31.37	0	1183189..1184361	+	390	150393629	-	SaurJH1_1163	-	hypothetical protein
1150	 30.76	0	1184415..1184957	+	180	150393630	-	SaurJH1_1164	-	hypothetical protein
1151	 34.83	0	1185111..1185377	+	88	150393631	-	SaurJH1_1165	-	phosphocarrier protein HPr
1152	 35.14	0	1185380..1187098	+	572	150393632	-	SaurJH1_1166	-	phosphoenolpyruvate-protein phosphotransferase
1153	 28.63	-1	1187335..1187568	-	77	150393633	-	SaurJH1_1167	-	glutaredoxin
1154	 33.92	0	1187766..1189127	+	453	150393634	-	SaurJH1_1168	-	cytochrome bd ubiquinol oxidase subunit I
1155	 30.49	0	1189124..1190143	+	339	150393635	-	SaurJH1_1169	-	cytochrome d ubiquinol oxidase subunit II
1156	 35.14	0	1190276..1190938	+	220	150393636	-	SaurJH1_1170	-	TrkA domain-containing protein
1157	 33.86	0	1191184..1192881	-	565	150393637	-	SaurJH1_1171	-	beta-lactamase domain-containing protein
1158	 31.51	0	1192881..1193099	-	72	150393638	-	SaurJH1_1172	-	hypothetical protein
1159	 34.96	0	1193581..1194132	-	183	150393639	def	SaurJH1_1173	-	peptide deformylase
1160	 29.19	-1	1194497..1195123	+	208	150393640	-	SaurJH1_1174	-	hypothetical protein
1161	 37.29	+1	1195294..1196406	+	370	150393641	-	SaurJH1_1175	-	pyruvate dehydrogenase (acetyl-transferring)
1162	 38.34	+1	1196410..1197387	+	325	150393642	-	SaurJH1_1176	-	transketolase domain-containing protein
1163	 38.05	+1	1197478..1198770	+	430	150393643	-	SaurJH1_1177	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1164	 36.96	+1	1198774..1200180	+	468	150393644	-	SaurJH1_1178	-	dihydrolipoamide dehydrogenase
1165	 32.25	0	1200348..1200623	+	91	150393645	-	SaurJH1_1179	-	hypothetical protein
1166	 29.81	0	1200767..1201306	+	179	150393646	-	SaurJH1_1180	-	helix-turn-helix domain-containing protein
1167	 30.96	0	1201319..1202413	+	364	150393647	-	SaurJH1_1181	-	ABC transporter related
1168	 27.32	-1	1202406..1203203	+	265	150393648	-	SaurJH1_1182	-	binding-protein-dependent transport systems inner membrane component
1169	 30.25	0	1203209..1204018	+	269	150393649	-	SaurJH1_1183	-	binding-protein-dependent transport systems inner membrane component
1170	 31.47	0	1204018..1205091	+	357	150393650	-	SaurJH1_1184	-	extracellular solute-binding protein
1171	 31.67	0	1205165..1206184	+	339	150393651	-	SaurJH1_1185	-	hypothetical protein
1172	 29.29	-1	1206467..1206886	+	139	150393652	-	SaurJH1_1186	-	hypothetical protein
1173	 32.22	0	1206965..1208317	-	450	150393653	-	SaurJH1_1187	-	Mn2+/Fe2+ transporter
1174	 32.85	0	1208501..1209115	-	204	150393654	-	SaurJH1_1188	-	hypothetical protein
1175	 34.63	0	1209254..1210099	+	281	150393655	-	SaurJH1_1189	-	inositol-phosphate phosphatase
1176	 26.56	-1	1210253..1210444	-	63	150393656	-	SaurJH1_1190	-	hypothetical protein
1177	 35.06	0	1210546..1212393	+	615	150393657	-	SaurJH1_1191	-	GTP-binding protein TypA
1178	 36.90	+1	1212533..1212700	-	55	150393658	-	SaurJH1_1192	-	hypothetical protein
1179	 31.88	0	1212702..1213184	-	160	150393659	-	SaurJH1_1193	-	hypothetical protein
1180	 31.52	0	1213325..1213600	+	91	150393660	-	SaurJH1_1194	-	hypothetical protein
1181	 31.15	0	1213902..1215140	+	412	150393661	-	SaurJH1_1195	-	cell cycle protein
1182	 35.48	0	1215694..1219146	+	1150	150393662	-	SaurJH1_1196	-	pyruvate carboxylase
1183	 33.52	0	1219286..1220356	-	356	150393663	-	SaurJH1_1197	-	cytochrome oxidase assembly
1184	 32.02	0	1220637..1221548	+	303	150393664	-	SaurJH1_1198	-	protoheme IX farnesyltransferase
1185	 32.47	0	1221573..1222034	+	153	150393665	-	SaurJH1_1199	-	hypothetical protein
1186	 30.06	0	1222361..1223398	+	345	150393666	-	SaurJH1_1200	-	hypothetical protein
1187	 35.17	0	1223414..1223848	+	144	150393667	-	SaurJH1_1201	-	hypothetical protein
1188	 36.03	0	1223911..1224837	-	308	150393668	-	SaurJH1_1202	-	glycerophosphoryl diester phosphodiesterase
1189	 27.45	-1	1225076..1225330	+	84	150393669	-	SaurJH1_1203	-	hypothetical protein
1190	 29.74	0	1225333..1225722	-	129	150393670	-	SaurJH1_1204	-	hypothetical protein
1191	 31.68	0	1225792..1226334	+	180	150393671	-	SaurJH1_1205	-	putative methyltransferase
1192	 30.85	0	1226336..1226818	+	160	150393672	-	SaurJH1_1206	-	pantetheine-phosphate adenylyltransferase
1193	 32.19	0	1226880..1228019	-	379	150393673	-	SaurJH1_1207	-	hypothetical protein
1194	 33.87	0	1228146..1228703	+	185	150393674	-	SaurJH1_1208	-	hypothetical protein
1195	 36.78	+1	1228783..1228956	+	57	150393675	rpmF	SaurJH1_1209	-	50S ribosomal protein L32
1196	 32.82	0	1229110..1231047	-	645	150393676	-	SaurJH1_1210	-	cell wall anchor domain-containing protein
1197	 33.52	0	1231250..1232302	-	350	150393677	-	SaurJH1_1211	-	cell wall anchor domain-containing protein
1198	 32.02	0	1232511..1233194	+	227	150393678	-	SaurJH1_1212	-	NEAr transporter
1199	 28.51	-1	1233194..1234270	+	358	150393679	-	SaurJH1_1213	-	hypothetical protein
1200	 30.94	0	1234267..1235145	+	292	150393680	-	SaurJH1_1214	-	periplasmic binding protein
1201	 32.71	0	1235155..1236123	+	322	150393681	-	SaurJH1_1215	-	transport system permease protein
1202	 26.94	-1	1236185..1236919	+	244	150393682	-	SaurJH1_1216	-	peptidase C60B sortase B
1203	 31.17	0	1236938..1237261	+	107	150393683	-	SaurJH1_1217	-	heme-degrading monooxygenase IsdG
1204	 35.22	0	1237645..1238385	+	246	150393684	-	SaurJH1_1218	-	tRNA/rRNA methyltransferase (SpoU)
1205	 34.75	0	1238765..1239823	+	352	150393685	pheS	SaurJH1_1219	-	phenylalanyl-tRNA synthetase subunit alpha
1206	 34.91	0	1239823..1242225	+	800	150393686	-	SaurJH1_1220	-	phenylalanyl-tRNA synthetase, beta subunit
1207	 32.91	0	1242657..1243595	-	312	150393687	-	SaurJH1_1221	-	ribonuclease HIII
1208	 32.58	0	1243965..1244231	+	88	150393688	-	SaurJH1_1222	-	hypothetical protein
1209	 28.54	-1	1244232..1244753	+	173	150393689	-	SaurJH1_1223	-	hypothetical protein
1210	 32.46	0	1244826..1246538	+	570	150393690	-	SaurJH1_1224	-	hypothetical protein
1211	 32.87	0	1246548..1248896	+	782	150393691	-	SaurJH1_1225	-	recombination and DNA strand exchange inhibitor protein
1212	 33.97	0	1249069..1249383	+	104	150393692	-	SaurJH1_1226	-	thioredoxin
1213	 33.11	0	1249707..1251488	+	593	150393693	uvrC	SaurJH1_1227	-	excinuclease ABC subunit C
1214	 32.03	0	1251812..1252426	+	204	150393694	-	SaurJH1_1228	-	succinate dehydrogenase/fumarate reductase cytochrome b subunit
1215	 38.43	+1	1252478..1254244	+	588	150393695	sdhA	SaurJH1_1229	-	succinate dehydrogenase flavoprotein subunit
1216	 35.29	0	1254244..1255059	+	271	150393696	sdhB	SaurJH1_1230	-	succinate dehydrogenase iron-sulfur subunit
33.01	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.