IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1079	 36.25	0	1105870..1112070	+	2066	150393559	-	SaurJH1_1091	-	TP901 family phage tail tape measure protein
1080	 30.67	0	1112070..1112894	+	274	150393560	-	SaurJH1_1092	-	hypothetical protein
1081	 29.86	0	1112903..1114486	+	527	150393561	-	SaurJH1_1093	-	hypothetical protein
1082	 34.71	0	1114486..1114776	+	96	150393562	-	SaurJH1_1094	-	hypothetical protein
1083	 35.27	0	1114792..1116702	+	636	150393563	-	SaurJH1_1095	-	hypothetical protein
1084	 33.81	0	1116702..1118168	+	488	150393564	-	SaurJH1_1096	-	phiSLT ORF488-like protein
1085	 31.54	0	1118168..1118557	+	129	150393565	-	SaurJH1_1097	-	SLT orf 129-like protein
1086	 28.48	-1	1118550..1118714	+	54	150393566	-	SaurJH1_1098	-	hypothetical protein
1087	 31.00	0	1118760..1119059	+	99	150393567	-	SaurJH1_1099	-	hypothetical protein
1088	 38.58	+1	1119195..1119632	+	145	150393568	-	SaurJH1_1100	-	phage phi LC3 family holin
1089	 40.59	+2	1119613..1121058	+	481	150393569	-	SaurJH1_1101	-	N-acetylmuramoyl-L-alanine amidase
1090	 43.14	+2	1121234..1121335	-	33	150393570	-	SaurJH1_1102	-	hypothetical protein
1091	 31.35	0	1121618..1123942	+	774	150393571	-	SaurJH1_1103	-	peptidase S1 and S6 chymotrypsin/Hap
1092	 31.94	0	1123959..1125317	+	452	150393572	-	SaurJH1_1104	-	H(+)-transporting two-sector ATPase
1093	 32.34	0	1125453..1126967	+	504	150393573	-	SaurJH1_1105	-	5'-nucleotidase domain-containing protein
1094	 30.18	0	1127454..1128023	-	189	150393574	-	SaurJH1_1106	-	ComK family protein
1095	 33.33	0	1128233..1128451	+	72	150393575	-	SaurJH1_1107	-	hypothetical protein
1096	 30.29	0	1128532..1129518	-	328	150393576	-	SaurJH1_1108	-	lipoyltransferase and lipoate-protein ligase
1097	 30.51	0	1129717..1129893	+	58	150393577	-	SaurJH1_1109	-	hypothetical protein
1098	 27.53	-1	1129908..1130510	+	200	150393578	-	SaurJH1_1110	-	abortive infection protein
1099	 25.93	-2	1130780..1130887	+	35	150393579	-	SaurJH1_1111	-	hypothetical protein
1100	 26.87	-1	1131853..1133817	+	654	150393580	-	SaurJH1_1113	-	bacteriocin-associated integral membrane protein
1101	 30.53	0	1133820..1134140	+	106	150393581	-	SaurJH1_1114	-	hypothetical protein
1102	 27.88	-1	1134137..1134778	+	213	150393582	-	SaurJH1_1115	-	ABC transporter related
1103	 26.46	-1	1134866..1135156	-	96	150393583	-	SaurJH1_1116	-	hypothetical protein
1104	 31.65	0	1135523..1135879	-	118	150393584	-	SaurJH1_1118	-	DoxX family protein
1105	 33.85	0	1136367..1137326	+	319	150393585	-	SaurJH1_1119	-	periplasmic binding protein
1106	 28.79	-1	1137372..1137503	-	43	150393586	-	SaurJH1_1120	-	hypothetical protein
1107	 26.85	-1	1137567..1137782	-	71	150393587	-	SaurJH1_1121	-	TM2 domain-containing protein
1108	 32.25	0	1137947..1138498	+	183	150393588	-	SaurJH1_1122	-	hypothetical protein
1109	 34.93	0	1138550..1139488	-	312	150393589	-	SaurJH1_1123	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1110	 31.94	0	1139670..1141031	+	453	150393590	-	SaurJH1_1124	-	isochorismate synthase
1111	 33.69	0	1141018..1142691	+	557	150393591	-	SaurJH1_1125	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1112	 32.84	0	1142678..1143481	+	267	150393592	-	SaurJH1_1126	-	alpha/beta hydrolase fold
1113	 38.56	+1	1143474..1144295	+	273	150393593	-	SaurJH1_1127	-	naphthoate synthase
1114	 31.52	0	1144533..1144862	-	109	150393594	-	SaurJH1_1128	-	cysteine protease
1115	 30.37	0	1144900..1146081	-	393	150393595	-	SaurJH1_1129	-	staphopain
1116	 37.12	+1	1146163..1147191	-	342	150393596	-	SaurJH1_1130	-	glutamyl endopeptidase
1117	 32.12	0	1147719..1148873	-	384	150393597	-	SaurJH1_1131	-	aminotransferase class I and II
1118	 27.30	-1	1149069..1150079	-	336	150393598	-	SaurJH1_1132	-	acyltransferase 3
1119	 31.43	0	1150232..1150651	+	139	150393599	-	SaurJH1_1133	-	regulatory protein MarR
1120	 32.43	0	1150678..1150788	+	36	150393600	-	SaurJH1_1134	-	hypothetical protein
1121	 34.93	0	1150858..1154604	-	1248	150393601	-	SaurJH1_1135	-	N-acetylmuramoyl-L-alanine amidase
1122	 34.71	0	1154832..1155266	-	144	150393602	-	SaurJH1_1136	-	GCN5-related N-acetyltransferase
1123	 30.79	0	1155421..1155891	-	156	150393603	-	SaurJH1_1137	-	hypothetical protein
1124	 32.59	0	1155939..1157156	-	405	150393604	-	SaurJH1_1138	-	transcription attenuator LytR
1125	 28.39	-1	1157607..1158800	+	397	150393605	-	SaurJH1_1139	-	beta-lactamase
1126	 35.40	0	1159337..1159627	-	96	150393606	-	SaurJH1_1140	-	cytochrome aa3 quinol oxidase subunit IV
1127	 35.97	0	1159624..1160229	-	201	150393607	-	SaurJH1_1141	-	cytochrome aa3 quinol oxidase subunit III
1128	 36.90	+1	1160219..1162207	-	662	150393608	-	SaurJH1_1142	-	cytochrome aa3 quinol oxidase subunit I
1129	 34.42	0	1162207..1163307	-	366	150393609	-	SaurJH1_1143	-	quinol oxidase AA3, subunit II
1130	 32.39	0	1163878..1164195	-	105	150393610	-	SaurJH1_1144	-	hypothetical protein
1131	 34.26	0	1165059..1165919	-	286	150393611	-	SaurJH1_1145	-	methylenetetrahydrofolate dehydrogenase (NADP(+))
1132	 38.10	+1	1166120..1166602	+	160	150393612	-	SaurJH1_1146	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1133	 32.98	0	1166589..1167713	+	374	150393613	-	SaurJH1_1147	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1134	 28.94	-1	1167717..1168421	+	234	150393614	-	SaurJH1_1148	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1135	 32.58	0	1168421..1168684	+	87	150393615	-	SaurJH1_1149	-	phosphoribosylformylglycinamidine synthase, purS
1136	 34.82	0	1168686..1169357	+	223	150393616	-	SaurJH1_1150	-	phosphoribosylformylglycinamidine synthase I
1137	 34.93	0	1169350..1171539	+	729	150393617	-	SaurJH1_1151	-	phosphoribosylformylglycinamidine synthase II
1138	 35.82	0	1171518..1173002	+	494	150393618	-	SaurJH1_1152	-	amidophosphoribosyltransferase
1139	 35.67	0	1172995..1174023	+	342	150393619	-	SaurJH1_1153	-	phosphoribosylaminoimidazole synthetase
1140	 32.10	0	1174026..1174592	+	188	150393620	-	SaurJH1_1154	-	phosphoribosylglycinamide formyltransferase
1141	 34.69	0	1174607..1176085	+	492	150393621	-	SaurJH1_1155	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1142	 35.50	0	1176107..1177354	+	415	150393622	-	SaurJH1_1156	-	phosphoribosylamine--glycine ligase
1143	 30.86	0	1177621..1178427	-	268	150393623	-	SaurJH1_1157	-	cobalt transport protein
1144	 33.26	0	1178420..1179820	-	466	150393624	-	SaurJH1_1158	-	ABC transporter related
1145	 37.15	+1	1179835..1180410	-	191	150393625	-	SaurJH1_1159	-	hypothetical protein
1146	 22.22	-2	1181183..1181317	-	44	150393626	-	SaurJH1_1160	-	hypothetical protein
1147	 29.09	-1	1181469..1182764	+	431	150393627	-	SaurJH1_1161	-	hypothetical protein
1148	 25.49	-2	1182785..1182988	-	67	150393628	-	SaurJH1_1162	-	hypothetical protein
1149	 31.37	0	1183189..1184361	+	390	150393629	-	SaurJH1_1163	-	hypothetical protein
1150	 30.76	0	1184415..1184957	+	180	150393630	-	SaurJH1_1164	-	hypothetical protein
1151	 34.83	0	1185111..1185377	+	88	150393631	-	SaurJH1_1165	-	phosphocarrier protein HPr
1152	 35.14	0	1185380..1187098	+	572	150393632	-	SaurJH1_1166	-	phosphoenolpyruvate-protein phosphotransferase
1153	 28.63	-1	1187335..1187568	-	77	150393633	-	SaurJH1_1167	-	glutaredoxin
1154	 33.92	0	1187766..1189127	+	453	150393634	-	SaurJH1_1168	-	cytochrome bd ubiquinol oxidase subunit I
1155	 30.49	0	1189124..1190143	+	339	150393635	-	SaurJH1_1169	-	cytochrome d ubiquinol oxidase subunit II
1156	 35.14	0	1190276..1190938	+	220	150393636	-	SaurJH1_1170	-	TrkA domain-containing protein
1157	 33.86	0	1191184..1192881	-	565	150393637	-	SaurJH1_1171	-	beta-lactamase domain-containing protein
1158	 31.51	0	1192881..1193099	-	72	150393638	-	SaurJH1_1172	-	hypothetical protein
1159	 34.96	0	1193581..1194132	-	183	150393639	def	SaurJH1_1173	-	peptide deformylase
1160	 29.19	-1	1194497..1195123	+	208	150393640	-	SaurJH1_1174	-	hypothetical protein
1161	 37.29	+1	1195294..1196406	+	370	150393641	-	SaurJH1_1175	-	pyruvate dehydrogenase (acetyl-transferring)
1162	 38.34	+1	1196410..1197387	+	325	150393642	-	SaurJH1_1176	-	transketolase domain-containing protein
1163	 38.05	+1	1197478..1198770	+	430	150393643	-	SaurJH1_1177	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1164	 36.96	+1	1198774..1200180	+	468	150393644	-	SaurJH1_1178	-	dihydrolipoamide dehydrogenase
1165	 32.25	0	1200348..1200623	+	91	150393645	-	SaurJH1_1179	-	hypothetical protein
1166	 29.81	0	1200767..1201306	+	179	150393646	-	SaurJH1_1180	-	helix-turn-helix domain-containing protein
1167	 30.96	0	1201319..1202413	+	364	150393647	-	SaurJH1_1181	-	ABC transporter related
1168	 27.32	-1	1202406..1203203	+	265	150393648	-	SaurJH1_1182	-	binding-protein-dependent transport systems inner membrane component
1169	 30.25	0	1203209..1204018	+	269	150393649	-	SaurJH1_1183	-	binding-protein-dependent transport systems inner membrane component
1170	 31.47	0	1204018..1205091	+	357	150393650	-	SaurJH1_1184	-	extracellular solute-binding protein
1171	 31.67	0	1205165..1206184	+	339	150393651	-	SaurJH1_1185	-	hypothetical protein
1172	 29.29	-1	1206467..1206886	+	139	150393652	-	SaurJH1_1186	-	hypothetical protein
1173	 32.22	0	1206965..1208317	-	450	150393653	-	SaurJH1_1187	-	Mn2+/Fe2+ transporter
1174	 32.85	0	1208501..1209115	-	204	150393654	-	SaurJH1_1188	-	hypothetical protein
1175	 34.63	0	1209254..1210099	+	281	150393655	-	SaurJH1_1189	-	inositol-phosphate phosphatase
1176	 26.56	-1	1210253..1210444	-	63	150393656	-	SaurJH1_1190	-	hypothetical protein
1177	 35.06	0	1210546..1212393	+	615	150393657	-	SaurJH1_1191	-	GTP-binding protein TypA
1178	 36.90	+1	1212533..1212700	-	55	150393658	-	SaurJH1_1192	-	hypothetical protein
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.