IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.01 STD DEV: 3.38
Staphylococcus aureus subsp. aureus JH1, complete genome - 1..2906507
2747 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1010	 29.02	-1	1056833..1057180	+	115	150393490	-	SaurJH1_1022	-	hypothetical protein
1011	 33.81	0	1057197..1057832	+	211	150393491	-	SaurJH1_1023	-	RelA/SpoT domain-containing protein
1012	 35.19	0	1057849..1058658	+	269	150393492	ppnK	SaurJH1_1024	-	inorganic polyphosphate/ATP-NAD kinase
1013	 30.88	0	1058655..1059509	+	284	150393493	-	SaurJH1_1025	-	RluA family pseudouridine synthase
1014	 33.41	0	1059530..1060915	+	461	150393494	-	SaurJH1_1026	-	magnesium transporter
1015	 31.65	0	1060925..1062769	+	614	150393495	-	SaurJH1_1027	-	sodium/hydrogen exchanger
1016	 35.41	0	1063047..1063817	+	256	150393496	-	SaurJH1_1028	-	enoyl-(acyl carrier protein) reductase
1017	 31.22	0	1064014..1065099	-	361	150393497	-	SaurJH1_1029	-	hypothetical protein
1018	 35.69	0	1065441..1067009	+	522	150393498	-	SaurJH1_1030	-	amino acid carrier protein
1019	 31.88	0	1067154..1067912	+	252	150393499	-	SaurJH1_1031	-	hypothetical protein
1020	 34.31	0	1068106..1068615	+	169	150393500	-	SaurJH1_1032	-	hypothetical protein
1021	 32.41	0	1068728..1069918	-	396	150393501	-	SaurJH1_1033	-	major facilitator transporter
1022	 32.65	0	1069896..1071071	-	391	150393502	-	SaurJH1_1034	-	diacylglycerol glucosyltransferase
1023	 36.84	+1	1071504..1072988	+	494	150393503	-	SaurJH1_1035	-	UDP-N-acetylmuramyl-tripeptide synthetase
1024	 30.16	0	1072978..1073229	+	83	150393504	-	SaurJH1_1036	-	hypothetical protein
1025	 34.04	0	1073229..1074791	+	520	150393505	prfC	SaurJH1_1037	-	peptide chain release factor 3
1026	 36.82	+1	1075093..1075896	+	267	150393506	-	SaurJH1_1038	-	integral membrane protein TerC
1027	 29.60	-1	1076185..1077390	-	401	150393507	-	SaurJH1_1039	-	phage integrase family protein
1028	 26.34	-1	1077516..1078130	+	204	150393508	-	SaurJH1_1040	-	phi PVL ORF 30-like protein
1029	 33.33	0	1078127..1078273	-	48	150393509	-	SaurJH1_1041	-	hypothetical protein
1030	 34.19	0	1078503..1079087	-	194	150393510	-	SaurJH1_1042	-	hypothetical protein
1031	 34.20	0	1079105..1079566	-	153	150393511	-	SaurJH1_1043	-	hypothetical protein
1032	 33.65	0	1079579..1079893	-	104	150393512	-	SaurJH1_1044	-	helix-turn-helix domain-containing protein
1033	 31.65	0	1080045..1080281	+	78	150393513	-	SaurJH1_1045	-	hypothetical protein
1034	 35.26	0	1080295..1081071	+	258	150393514	-	SaurJH1_1046	-	Rha family phage regulatory protein
1035	 29.17	-1	1081100..1081243	+	47	150393515	-	SaurJH1_1047	-	hypothetical protein
1036	 28.77	-1	1081233..1081451	-	72	150393516	-	SaurJH1_1048	-	hypothetical protein
1037	 35.66	0	1081486..1081743	+	85	150393517	-	SaurJH1_1049	-	hypothetical protein
1038	 28.96	-1	1081712..1082077	-	121	150393518	-	SaurJH1_1050	-	hypothetical protein
1039	 34.26	0	1082132..1082347	+	71	150393519	-	SaurJH1_1051	-	SLT orf 71-like protein-related protein
1040	 30.68	0	1082372..1082635	+	87	150393520	-	SaurJH1_1052	-	PVL orf 37-like protein
1041	 37.65	+1	1082648..1082809	+	53	150393521	-	SaurJH1_1053	-	hypothetical protein
1042	 32.41	0	1082888..1083211	+	107	150393522	-	SaurJH1_1054	-	hypothetical protein
1043	 29.48	-1	1083226..1083588	+	120	150393523	-	SaurJH1_1055	-	hypothetical protein
1044	 34.88	0	1083585..1084751	+	388	150393524	-	SaurJH1_1056	-	hypothetical protein
1045	 34.41	0	1084777..1085334	+	185	150393525	-	SaurJH1_1057	-	hypothetical protein
1046	 35.22	0	1085394..1087355	+	653	150393526	-	SaurJH1_1058	-	DNA-directed DNA polymerase
1047	 29.03	-1	1087368..1087553	+	61	150393527	-	SaurJH1_1059	-	ETA orf 26-like protein-related protein
1048	 33.58	0	1087553..1087954	+	133	150393528	-	SaurJH1_1060	-	PVL ORF-50 family protein
1049	 38.04	+1	1087954..1088208	+	84	150393529	-	SaurJH1_1061	-	hypothetical protein
1050	 36.63	+1	1088214..1088456	+	80	150393530	-	SaurJH1_1062	-	phage conserved Open Reading Frame 51
1051	 31.40	0	1088470..1088676	+	68	150393531	-	SaurJH1_1063	-	hypothetical protein
1052	 30.76	0	1088679..1089416	+	245	150393532	-	SaurJH1_1064	-	hypothetical protein
1053	 36.67	+1	1089413..1089802	+	129	150393533	-	SaurJH1_1065	-	PV83 orf 27-like protein
1054	 38.15	+1	1089795..1090043	+	82	150393534	-	SaurJH1_1066	-	hypothetical protein
1055	 31.84	0	1090036..1090572	+	178	150393535	-	SaurJH1_1067	-	dUTPase
1056	 36.23	0	1090609..1090815	+	68	150393536	-	SaurJH1_1068	-	hypothetical protein
1057	 32.04	0	1090812..1091198	+	128	150393537	-	SaurJH1_1069	-	hypothetical protein
1058	 33.33	0	1091195..1091347	+	50	150393538	-	SaurJH1_1070	-	transcriptional activator RinB
1059	 29.06	-1	1091382..1091615	+	77	150393539	-	SaurJH1_1071	-	hypothetical protein
1060	 35.13	0	1091903..1094350	+	815	150393540	-	SaurJH1_1072	-	virulence-associated E family protein
1061	 29.85	0	1094296..1094496	-	66	150393541	-	SaurJH1_1073	-	hypothetical protein
1062	 30.58	0	1094691..1094981	+	96	150393542	-	SaurJH1_1074	-	VRR-NUC domain-containing protein
1063	 32.74	0	1094971..1096329	+	452	150393543	-	SaurJH1_1075	-	SNF2-related protein
1064	 32.88	0	1096342..1096779	+	145	150393544	-	SaurJH1_1076	-	RinA family phage transcriptional regulator
1065	 27.94	-1	1096936..1097250	+	104	150393545	-	SaurJH1_1077	-	HNH endonuclease
1066	 28.43	-1	1097379..1097684	+	101	150393546	-	SaurJH1_1078	-	phage terminase small subunit putative P27
1067	 33.75	0	1097674..1099365	+	563	150393547	-	SaurJH1_1079	-	phage terminase
1068	 32.69	0	1099370..1100608	+	412	150393548	-	SaurJH1_1080	-	HK97 family phage portal protein
1069	 31.01	0	1100592..1101365	+	257	150393549	-	SaurJH1_1081	-	peptidase S14 ClpP
1070	 32.82	0	1101377..1102540	+	387	150393550	-	SaurJH1_1082	-	phage major capsid protein HK97
1071	 32.26	0	1102609..1102887	+	92	150393551	-	SaurJH1_1083	-	uncharacterized phage protein
1072	 27.63	-1	1102899..1103231	+	110	150393552	-	SaurJH1_1084	-	hypothetical protein
1073	 32.84	0	1103228..1103629	+	133	150393553	-	SaurJH1_1085	-	SLT orf 123-like protein
1074	 26.52	-1	1103630..1104025	+	131	150393554	-	SaurJH1_1086	-	hypothetical protein
1075	 36.45	+1	1104060..1104701	+	213	150393555	-	SaurJH1_1087	-	phi13 family phage major tail protein
1076	 36.62	+1	1104793..1105248	+	151	150393556	-	SaurJH1_1088	-	Ig domain-containing protein
1077	 31.05	0	1105306..1105656	+	116	150393557	-	SaurJH1_1089	-	hypothetical protein
1078	 33.33	0	1105698..1105856	+	52	150393558	-	SaurJH1_1090	-	hypothetical protein
1079	 36.25	0	1105870..1112070	+	2066	150393559	-	SaurJH1_1091	-	TP901 family phage tail tape measure protein
1080	 30.67	0	1112070..1112894	+	274	150393560	-	SaurJH1_1092	-	hypothetical protein
1081	 29.86	0	1112903..1114486	+	527	150393561	-	SaurJH1_1093	-	hypothetical protein
1082	 34.71	0	1114486..1114776	+	96	150393562	-	SaurJH1_1094	-	hypothetical protein
1083	 35.27	0	1114792..1116702	+	636	150393563	-	SaurJH1_1095	-	hypothetical protein
1084	 33.81	0	1116702..1118168	+	488	150393564	-	SaurJH1_1096	-	phiSLT ORF488-like protein
1085	 31.54	0	1118168..1118557	+	129	150393565	-	SaurJH1_1097	-	SLT orf 129-like protein
1086	 28.48	-1	1118550..1118714	+	54	150393566	-	SaurJH1_1098	-	hypothetical protein
1087	 31.00	0	1118760..1119059	+	99	150393567	-	SaurJH1_1099	-	hypothetical protein
1088	 38.58	+1	1119195..1119632	+	145	150393568	-	SaurJH1_1100	-	phage phi LC3 family holin
1089	 40.59	+2	1119613..1121058	+	481	150393569	-	SaurJH1_1101	-	N-acetylmuramoyl-L-alanine amidase
1090	 43.14	+2	1121234..1121335	-	33	150393570	-	SaurJH1_1102	-	hypothetical protein
1091	 31.35	0	1121618..1123942	+	774	150393571	-	SaurJH1_1103	-	peptidase S1 and S6 chymotrypsin/Hap
1092	 31.94	0	1123959..1125317	+	452	150393572	-	SaurJH1_1104	-	H(+)-transporting two-sector ATPase
1093	 32.34	0	1125453..1126967	+	504	150393573	-	SaurJH1_1105	-	5'-nucleotidase domain-containing protein
1094	 30.18	0	1127454..1128023	-	189	150393574	-	SaurJH1_1106	-	ComK family protein
1095	 33.33	0	1128233..1128451	+	72	150393575	-	SaurJH1_1107	-	hypothetical protein
1096	 30.29	0	1128532..1129518	-	328	150393576	-	SaurJH1_1108	-	lipoyltransferase and lipoate-protein ligase
1097	 30.51	0	1129717..1129893	+	58	150393577	-	SaurJH1_1109	-	hypothetical protein
1098	 27.53	-1	1129908..1130510	+	200	150393578	-	SaurJH1_1110	-	abortive infection protein
1099	 25.93	-2	1130780..1130887	+	35	150393579	-	SaurJH1_1111	-	hypothetical protein
1100	 26.87	-1	1131853..1133817	+	654	150393580	-	SaurJH1_1113	-	bacteriocin-associated integral membrane protein
1101	 30.53	0	1133820..1134140	+	106	150393581	-	SaurJH1_1114	-	hypothetical protein
1102	 27.88	-1	1134137..1134778	+	213	150393582	-	SaurJH1_1115	-	ABC transporter related
1103	 26.46	-1	1134866..1135156	-	96	150393583	-	SaurJH1_1116	-	hypothetical protein
1104	 31.65	0	1135523..1135879	-	118	150393584	-	SaurJH1_1118	-	DoxX family protein
1105	 33.85	0	1136367..1137326	+	319	150393585	-	SaurJH1_1119	-	periplasmic binding protein
1106	 28.79	-1	1137372..1137503	-	43	150393586	-	SaurJH1_1120	-	hypothetical protein
1107	 26.85	-1	1137567..1137782	-	71	150393587	-	SaurJH1_1121	-	TM2 domain-containing protein
1108	 32.25	0	1137947..1138498	+	183	150393588	-	SaurJH1_1122	-	hypothetical protein
1109	 34.93	0	1138550..1139488	-	312	150393589	-	SaurJH1_1123	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
33.01	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.