IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.08   STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
939	 33.54	0	994673..997078	-	801	148267386	-	SaurJH9_0952	-	monovalent cation/H+ antiporter subunit A
940	 33.85	0	997209..997592	-	127	148267387	-	SaurJH9_0953	-	hypothetical protein
941	 35.19	0	997656..998249	+	197	148267388	-	SaurJH9_0954	-	peptidylprolyl isomerase
942	 32.80	0	998664..999041	+	125	148267389	-	SaurJH9_0955	-	RNA-binding S1 domain-containing protein
943	 36.79	+1	999403..1000530	+	375	148267390	-	SaurJH9_0956	-	NADH:flavin oxidoreductase/NADH oxidase
944	 35.77	0	1000838..1002028	+	396	148267391	rocD	SaurJH9_0957	-	ornithine--oxo-acid transaminase
945	 36.91	+1	1002095..1003381	+	428	148267392	-	SaurJH9_0958	-	Glu/Leu/Phe/Val dehydrogenase, C terminal
946	 32.90	0	1003908..1004837	-	309	148267393	-	SaurJH9_0959	-	glycerophosphodiester phosphodiesterase
947	 35.00	0	1005079..1006458	-	459	148267394	-	SaurJH9_0960	-	argininosuccinate lyase
948	 35.24	0	1006448..1007653	-	401	148267395	-	SaurJH9_0961	-	argininosuccinate synthase
949	 33.56	0	1008005..1009336	+	443	148267396	pgi	SaurJH9_0962	-	glucose-6-phosphate isomerase
950	 30.73	0	1009661..1010236	+	191	148267397	-	SaurJH9_0963	-	hypothetical protein
951	 31.05	0	1010241..1010765	+	174	148267398	-	SaurJH9_0964	-	signal peptidase I
952	 30.21	0	1010781..1011356	+	191	148267399	-	SaurJH9_0965	-	signal peptidase I
953	 32.24	0	1011516..1014989	+	1157	148267400	-	SaurJH9_0966	-	ATP-dependent nuclease subunit AddB
954	 33.33	0	1014993..1018646	+	1217	148267401	-	SaurJH9_0967	-	recombination helicase AddA
955	 32.89	0	1018812..1019714	+	300	148267402	-	SaurJH9_0968	-	5-carboxymethyl-2-hydroxymuconate Delta-isomerase
956	 33.08	0	1020043..1020432	+	129	148267403	-	SaurJH9_0969	-	hypothetical protein
957	 35.38	0	1020604..1021920	-	438	148267404	-	SaurJH9_0970	-	coenzyme A disulfide reductase
958	 31.52	0	1021972..1022796	-	274	148267405	-	SaurJH9_0971	-	Cof-like hydrolase
959	 35.92	0	1022910..1023218	+	102	148267406	-	SaurJH9_0972	-	hypothetical protein
960	 30.63	0	1023766..1025580	+	604	148267407	-	SaurJH9_0973	-	acyltransferase 3
961	 33.87	0	1025783..1028392	+	869	148267408	-	SaurJH9_0974	-	ATPase
962	 27.70	-1	1028451..1029320	-	289	148267409	-	SaurJH9_0975	-	LysR family transcriptional regulator
963	 26.88	-1	1029430..1030575	+	381	148267410	-	SaurJH9_0976	-	2-isopropylmalate synthase
964	 25.70	-2	1030559..1031200	+	213	148267411	-	SaurJH9_0977	-	SUA5/yciO/yrdC domain-containing protein
965	 24.06	-2	1031193..1032314	+	373	148267412	-	SaurJH9_0978	-	hypothetical protein
966	 30.81	0	1032292..1032807	+	171	148267413	-	SaurJH9_0979	-	PEBP family protein
967	 32.18	0	1033118..1033552	+	144	148267414	-	SaurJH9_0980	-	MAP domain-containing protein
968	 34.41	0	1033809..1033994	-	61	148267415	-	SaurJH9_0981	-	hypothetical protein
969	 35.46	0	1034289..1035230	+	313	148267416	-	SaurJH9_0982	-	3-oxoacyl-(acyl carrier protein) synthase III
970	 39.36	+1	1035242..1036486	+	414	148267417	-	SaurJH9_0983	-	Beta-ketoacyl synthase-like protein
971	 27.15	-1	1036541..1036912	-	123	148267418	-	SaurJH9_0984	-	hypothetical protein
972	 32.79	0	1037155..1038081	+	308	148267419	-	SaurJH9_0985	-	binding-protein-dependent transport systems inner membrane component
973	 34.08	0	1038081..1039151	+	356	148267420	-	SaurJH9_0986	-	binding-protein-dependent transport systems inner membrane component
974	 35.55	0	1039167..1040249	+	360	148267421	-	SaurJH9_0987	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
975	 33.12	0	1040239..1041180	+	313	148267422	-	SaurJH9_0988	-	ABC transporter related
976	 32.73	0	1041199..1042854	+	551	148267423	-	SaurJH9_0989	-	4-phytase
977	 32.34	0	1043066..1044781	+	571	148267424	-	SaurJH9_0990	-	extracellular solute-binding protein
978	 30.29	0	1044832..1045818	+	328	148267425	-	SaurJH9_0991	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
979	 30.58	0	1045821..1046801	+	326	148267426	-	SaurJH9_0992	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
980	 28.14	-1	1046794..1047756	+	320	148267427	-	SaurJH9_0993	-	binding-protein-dependent transport systems inner membrane component
981	 31.52	0	1047768..1048649	+	293	148267428	-	SaurJH9_0994	-	binding-protein-dependent transport systems inner membrane component
982	 34.75	0	1048691..1049680	-	329	148267429	-	SaurJH9_0995	-	tryptophanyl-tRNA synthetase
983	 32.58	0	1049974..1050369	+	131	148267430	spxA	SaurJH9_0996	-	transcriptional regulator Spx
984	 31.94	0	1050740..1051459	+	239	148267431	-	SaurJH9_0997	-	adaptor protein
985	 28.17	-1	1051580..1052566	+	328	148267432	-	SaurJH9_0998	-	competence CoiA family protein
986	 32.17	0	1052614..1054422	+	602	148267433	-	SaurJH9_0999	-	oligoendopeptidase F
987	 30.48	0	1054882..1055688	-	268	148267434	-	SaurJH9_1000	-	hypothetical protein
988	 34.97	0	1055711..1056076	-	121	148267435	-	SaurJH9_1001	-	globin
989	 29.97	0	1056180..1056773	-	197	148267436	-	SaurJH9_1002	-	hypothetical protein
990	 29.02	-1	1056959..1057306	+	115	148267437	-	SaurJH9_1003	-	hypothetical protein
991	 33.81	0	1057323..1057958	+	211	148267438	-	SaurJH9_1004	-	RelA/SpoT domain-containing protein
992	 35.19	0	1057975..1058784	+	269	148267439	ppnK	SaurJH9_1005	-	inorganic polyphosphate/ATP-NAD kinase
993	 30.88	0	1058781..1059635	+	284	148267440	-	SaurJH9_1006	-	RluA family pseudouridine synthase
994	 33.41	0	1059656..1061041	+	461	148267441	-	SaurJH9_1007	-	magnesium transporter
995	 31.65	0	1061051..1062895	+	614	148267442	-	SaurJH9_1008	-	sodium/hydrogen exchanger
996	 35.41	0	1063173..1063943	+	256	148267443	-	SaurJH9_1009	-	enoyl-(acyl carrier protein) reductase
997	 31.22	0	1064140..1065225	-	361	148267444	-	SaurJH9_1010	-	hypothetical protein
998	 35.69	0	1065567..1067135	+	522	148267445	-	SaurJH9_1011	-	amino acid carrier protein
999	 31.88	0	1067280..1068038	+	252	148267446	-	SaurJH9_1012	-	hypothetical protein
1000	 34.31	0	1068232..1068741	+	169	148267447	-	SaurJH9_1013	-	hypothetical protein
1001	 32.41	0	1068854..1070044	-	396	148267448	-	SaurJH9_1014	-	major facilitator transporter
1002	 32.65	0	1070022..1071197	-	391	148267449	-	SaurJH9_1015	-	diacylglycerol glucosyltransferase
1003	 36.84	+1	1071630..1073114	+	494	148267450	-	SaurJH9_1016	-	UDP-N-acetylmuramyl-tripeptide synthetase
1004	 30.16	0	1073104..1073355	+	83	148267451	-	SaurJH9_1017	-	hypothetical protein
1005	 34.04	0	1073355..1074917	+	520	148267452	prfC	SaurJH9_1018	-	peptide chain release factor 3
1006	 36.82	+1	1075219..1076022	+	267	148267453	-	SaurJH9_1019	-	integral membrane protein TerC
1007	 29.60	-1	1076311..1077516	-	401	148267454	-	SaurJH9_1020	-	phage integrase family protein
1008	 26.34	-2	1077642..1078256	+	204	148267455	-	SaurJH9_1021	-	hypothetical protein
1009	 33.33	0	1078253..1078399	-	48	148267456	-	SaurJH9_1022	-	hypothetical protein
1010	 34.19	0	1078629..1079213	-	194	148267457	-	SaurJH9_1023	-	hypothetical protein
1011	 34.20	0	1079231..1079692	-	153	148267458	-	SaurJH9_1024	-	hypothetical protein
1012	 33.65	0	1079705..1080019	-	104	148267459	-	SaurJH9_1025	-	XRE family transcriptional regulator
1013	 31.65	0	1080171..1080407	+	78	148267460	-	SaurJH9_1026	-	hypothetical protein
1014	 35.26	0	1080421..1081197	+	258	148267461	-	SaurJH9_1027	-	Rha family phage regulatory protein
1015	 29.17	-1	1081226..1081369	+	47	148267462	-	SaurJH9_1028	-	hypothetical protein
1016	 28.77	-1	1081359..1081577	-	72	148267463	-	SaurJH9_1029	-	hypothetical protein
1017	 35.66	0	1081612..1081869	+	85	148267464	-	SaurJH9_1030	-	hypothetical protein
1018	 28.96	-1	1081838..1082203	-	121	148267465	-	SaurJH9_1031	-	hypothetical protein
1019	 34.26	0	1082258..1082473	+	71	148267466	-	SaurJH9_1032	-	hypothetical protein
1020	 30.68	0	1082498..1082761	+	87	148267467	-	SaurJH9_1033	-	hypothetical protein
1021	 37.65	+1	1082774..1082935	+	53	148267468	-	SaurJH9_1034	-	hypothetical protein
1022	 32.41	0	1083014..1083337	+	107	148267469	-	SaurJH9_1035	-	hypothetical protein
1023	 29.48	-1	1083352..1083714	+	120	148267470	-	SaurJH9_1036	-	hypothetical protein
1024	 34.88	0	1083711..1084877	+	388	148267471	-	SaurJH9_1037	-	hypothetical protein
1025	 34.41	0	1084903..1085460	+	185	148267472	-	SaurJH9_1038	-	hypothetical protein
1026	 35.22	0	1085520..1087481	+	653	148267473	-	SaurJH9_1039	-	DNA-directed DNA polymerase
1027	 29.03	-1	1087494..1087679	+	61	148267474	-	SaurJH9_1040	-	hypothetical protein
1028	 33.58	0	1087679..1088080	+	133	148267475	-	SaurJH9_1041	-	PVL ORF-50 family protein
1029	 38.04	+1	1088080..1088334	+	84	148267476	-	SaurJH9_1042	-	hypothetical protein
1030	 36.63	+1	1088340..1088582	+	80	148267477	-	SaurJH9_1043	-	phage conserved Open Reading Frame 51
1031	 31.40	0	1088596..1088802	+	68	148267478	-	SaurJH9_1044	-	hypothetical protein
1032	 30.76	0	1088805..1089542	+	245	148267479	-	SaurJH9_1045	-	hypothetical protein
1033	 36.67	+1	1089539..1089928	+	129	148267480	-	SaurJH9_1046	-	hypothetical protein
1034	 38.15	+1	1089921..1090169	+	82	148267481	-	SaurJH9_1047	-	hypothetical protein
1035	 31.84	0	1090162..1090698	+	178	148267482	-	SaurJH9_1048	-	dUTPase
1036	 36.23	0	1090735..1090941	+	68	148267483	-	SaurJH9_1049	-	hypothetical protein
1037	 32.04	0	1090938..1091324	+	128	148267484	-	SaurJH9_1050	-	hypothetical protein
1038	 33.33	0	1091321..1091473	+	50	148267485	-	SaurJH9_1051	-	transcriptional activator RinB
33.08	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.