IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.08   STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
44	 32.05	0	55805..56116	-	103	148266491	-	SaurJH9_0046	-	hypothetical protein
45	 34.76	0	56203..56553	-	116	148266492	-	SaurJH9_0047	-	hypothetical protein
46	 34.99	0	57071..58699	-	542	148266493	-	SaurJH9_0048	-	resolvase domain-containing protein
47	 34.81	0	58721..60070	-	449	148266494	-	SaurJH9_0049	-	resolvase domain-containing protein
48	 34.73	0	60304..62097	-	597	148266495	-	SaurJH9_0050	-	hypothetical protein
49	 34.68	0	62097..62393	-	98	148266496	-	SaurJH9_0051	-	hypothetical protein
50	 25.12	-2	62586..63632	-	348	148266497	-	SaurJH9_0052	-	hypothetical protein
51	 31.91	0	63883..64305	-	140	148266498	-	SaurJH9_0053	-	integrase catalytic subunit
52	 30.23	0	64372..64725	-	117	148266499	-	SaurJH9_0054	-	hypothetical protein
53	 30.79	0	64710..65024	-	104	148266500	-	SaurJH9_0055	-	hypothetical protein
54	 36.88	+1	65535..66437	-	300	148266501	-	SaurJH9_0056	-	C4-dicarboxylate anaerobic carrier
55	 37.36	+1	67183..67878	-	231	148266502	-	SaurJH9_0057	-	two component transcriptional regulator
56	 36.63	+1	67853..70522	-	889	148266503	-	SaurJH9_0058	-	osmosensitive K+ channel signal transduction histidine kinase
57	 36.79	+1	70790..72466	+	558	148266504	-	SaurJH9_0059	-	potassium-transporting ATPase subunit A
58	 39.76	+2	72485..74506	+	673	148266505	-	SaurJH9_0060	-	K+-transporting ATPase, B subunit
59	 36.74	+1	74522..75079	+	185	148266506	-	SaurJH9_0061	-	potassium-transporting ATPase, C subunit
60	 26.94	-1	77599..78036	-	145	148266507	-	SaurJH9_0063	-	hypothetical protein
61	 30.56	0	78141..78428	-	95	148266508	-	SaurJH9_0064	-	hypothetical protein
62	 29.67	-1	78518..79144	-	208	148266509	-	SaurJH9_0065	-	hypothetical protein
63	 31.21	0	79259..80767	+	502	148266510	-	SaurJH9_0066	-	protein kinase
64	 21.51	-2	81115..81207	+	30	148266511	-	SaurJH9_0067	-	hypothetical protein
65	 25.60	-2	81354..83099	+	581	148266512	-	SaurJH9_0068	-	hypothetical protein
66	 31.48	0	84043..84798	-	251	148266513	-	SaurJH9_0071	-	hypothetical protein
67	 30.65	0	84798..85058	-	86	148266514	-	SaurJH9_0072	-	hypothetical protein
68	 31.64	0	85195..86259	+	354	148266515	-	SaurJH9_0073	-	rhodanese domain-containing protein
69	 33.48	0	86290..87624	+	444	148266516	-	SaurJH9_0074	-	beta-lactamase domain-containing protein
70	 32.66	0	87643..88836	+	397	148266517	-	SaurJH9_0075	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
71	 31.37	0	89103..89204	-	33	148266518	-	SaurJH9_0076	-	hypothetical protein
72	 38.91	+1	89503..90489	-	328	148266519	-	SaurJH9_0077	-	hypothetical protein
73	 30.30	0	91050..91346	+	98	148266520	-	SaurJH9_0078	-	TfoX domain-containing protein
74	 30.85	0	91554..92156	+	200	148266521	-	SaurJH9_0079	-	hypothetical protein
75	 31.88	0	95627..96109	+	160	148266522	-	SaurJH9_0082	-	hypothetical protein
76	 33.74	0	96315..97301	+	328	148266523	-	SaurJH9_0083	-	phosphatidylinositol diacylglycerol-lyase
77	 30.09	0	97522..98292	+	256	148266524	-	SaurJH9_0084	-	putative lipoprotein
78	 29.73	-1	98311..99114	+	267	148266525	-	SaurJH9_0085	-	putative lipoprotein
79	 29.95	0	99182..99949	+	255	148266526	-	SaurJH9_0086	-	putative lipoprotein
80	 28.91	-1	100017..100784	+	255	148266527	-	SaurJH9_0087	-	putative lipoprotein
81	 30.86	0	100851..101618	+	255	148266528	-	SaurJH9_0088	-	putative lipoprotein
82	 33.69	0	101715..103952	+	745	148266529	-	SaurJH9_0089	-	helix-turn-helix domain-containing protein
83	 37.23	+1	104103..105281	+	392	148266530	-	SaurJH9_0090	-	amidohydrolase
84	 36.79	+1	105283..106671	+	462	148266531	-	SaurJH9_0091	-	major facilitator transporter
85	 36.09	0	107155..108822	-	555	148266532	-	SaurJH9_0092	-	Na/Pi-cotransporter II-related protein
86	 35.81	0	109141..110916	-	591	148266533	-	SaurJH9_0093	-	67 kDa myosin-cross-reactive antigen family protein
87	 30.81	0	111090..111962	-	290	148266534	-	SaurJH9_0094	-	hypothetical protein
88	 29.42	-1	112144..113472	+	442	148266535	-	SaurJH9_0095	-	GntR family transcriptional regulator
89	 29.54	-1	113662..114135	+	157	148266536	-	SaurJH9_0096	-	hypothetical protein
90	 34.59	0	114397..115989	+	530	148266537	-	SaurJH9_0097	-	L-lactate transport
91	 38.20	+1	116318..117880	-	520	148266538	-	SaurJH9_0098	-	cell wall anchor domain-containing protein
92	 27.49	-1	118265..119017	-	250	148266539	-	SaurJH9_0099	-	SarA family transcriptional regulator
93	 36.74	+1	119386..120384	-	332	148266540	-	SaurJH9_0100	-	transport system permease protein
94	 38.45	+1	120381..121376	-	331	148266541	-	SaurJH9_0101	-	transport system permease protein
95	 32.23	0	121392..122384	-	330	148266542	-	SaurJH9_0102	-	periplasmic binding protein
96	 36.90	+1	122615..123595	+	326	148266543	-	SaurJH9_0103	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
97	 37.19	+1	123592..124602	+	336	148266544	-	SaurJH9_0104	-	ornithine cyclodeaminase
98	 35.95	0	124623..126377	+	584	148266545	-	SaurJH9_0105	-	IucA/IucC family protein
99	 39.14	+1	126370..127626	+	418	148266546	-	SaurJH9_0106	-	major facilitator transporter
100	 36.33	0	127616..129352	+	578	148266547	-	SaurJH9_0107	-	IucA/IucC family protein
101	 35.92	0	129333..131111	+	592	148266548	-	SaurJH9_0108	-	IucA/IucC family protein
102	 40.13	+2	131083..131862	+	259	148266549	-	SaurJH9_0109	-	HpcH/HpaI aldolase
103	 36.33	0	131862..133064	+	400	148266550	-	SaurJH9_0110	-	Orn/DAP/Arg decarboxylase 2
104	 36.86	+1	133068..133832	+	254	148266551	-	SaurJH9_0111	-	nuclease
105	 31.74	0	134028..134654	+	208	148266552	-	SaurJH9_0112	-	hypothetical protein
106	 40.93	+2	134866..135642	+	258	148266553	-	SaurJH9_0113	-	acetoin reductase
107	 31.89	0	135987..136958	+	323	148266554	-	SaurJH9_0114	-	NAD-dependent epimerase/dehydratase
108	 35.21	0	137029..137613	+	194	148266555	-	SaurJH9_0115	-	sugar transferase
109	 33.68	0	137823..138989	+	388	148266556	-	SaurJH9_0116	-	glycosyl transferase, group 1
110	 30.51	0	138970..140208	+	412	148266557	-	SaurJH9_0117	-	hypothetical protein
111	 31.45	0	140198..141628	+	476	148266558	-	SaurJH9_0118	-	polysaccharide biosynthesis protein
112	 35.33	0	141896..142495	+	199	148266559	-	SaurJH9_0119	-	superoxide dismutase
113	 35.26	0	142862..143587	+	241	148266560	-	SaurJH9_0120	-	cell wall anchor domain-containing protein
114	 35.85	0	143778..144533	-	251	148266561	-	SaurJH9_0121	-	regulatory protein GntR, HTH
115	 37.57	+1	144769..145476	+	235	148266562	-	SaurJH9_0122	-	purine nucleoside phosphorylase
116	 31.86	0	145483..146835	+	450	148266563	-	SaurJH9_0123	-	major facilitator transporter
117	 40.27	+2	146916..147578	+	220	148266564	-	SaurJH9_0124	-	deoxyribose-phosphate aldolase
118	 36.81	+1	147606..148784	+	392	148266565	-	SaurJH9_0125	-	phosphopentomutase
119	 36.89	+1	148913..149728	-	271	148266566	-	SaurJH9_0126	-	phosphonate ABC transporter, inner membrane subunit
120	 34.33	0	149725..150525	-	266	148266567	-	SaurJH9_0127	-	phosphonate ABC transporter, inner membrane subunit
121	 35.14	0	150527..151300	-	257	148266568	-	SaurJH9_0128	-	phosphonate ABC transporter, ATPase subunit
122	 30.83	0	151495..152451	-	318	148266569	-	SaurJH9_0129	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
123	 37.02	+1	152680..154224	+	514	148266570	-	SaurJH9_0130	-	hypothetical protein
124	 36.59	+1	154275..155810	+	511	148266571	-	SaurJH9_0131	-	5'-nucleotidase domain-containing protein
125	 29.17	-1	155967..156734	+	255	148266572	-	SaurJH9_0132	-	hypothetical protein
126	 28.74	-1	156740..157915	+	391	148266573	-	SaurJH9_0133	-	hypothetical protein
127	 36.09	0	158300..160909	+	869	148266574	-	SaurJH9_0134	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
128	 29.90	0	161252..161920	+	222	148266575	-	SaurJH9_0135	-	MPA1 family polysaccharide export protein
129	 33.62	0	161936..162622	+	228	148266576	-	SaurJH9_0136	-	exopolysaccharide tyrosine-protein kinase
130	 31.90	0	162625..163389	+	254	148266577	-	SaurJH9_0137	-	protein-tyrosine-phosphatase
131	 34.98	0	163409..165232	+	607	148266578	-	SaurJH9_0138	-	polysaccharide biosynthesis protein CapD
132	 34.11	0	165222..166250	+	342	148266579	-	SaurJH9_0139	-	polysaccharide biosynthesis protein CapD
133	 34.77	0	166263..167372	+	369	148266580	-	SaurJH9_0140	-	NAD-dependent epimerase/dehydratase
134	 33.69	0	167376..168500	+	374	148266581	-	SaurJH9_0141	-	UDP-N-acetylglucosamine 2-epimerase
135	 32.70	0	168503..169129	+	208	148266582	-	SaurJH9_0142	-	acetyltransferase
136	 29.01	-1	169134..170243	+	369	148266583	-	SaurJH9_0143	-	hypothetical protein
137	 29.22	-1	170257..171423	+	388	148266584	-	SaurJH9_0144	-	O-antigen polymerase
138	 26.70	-1	171416..172621	+	401	148266585	-	SaurJH9_0145	-	hypothetical protein
139	 35.16	0	172622..173827	+	401	148266586	-	SaurJH9_0146	-	glycosyl transferase, group 1
140	 32.44	0	173838..174395	+	185	148266587	-	SaurJH9_0147	-	sugar transferase
141	 33.90	0	174395..175282	+	295	148266588	-	SaurJH9_0148	-	NAD-dependent epimerase/dehydratase
142	 34.28	0	175336..176598	+	420	148266589	-	SaurJH9_0149	-	UDP-glucose/GDP-mannose dehydrogenase
143	 36.30	0	176675..177820	+	381	148266590	-	SaurJH9_0150	-	UDP-N-acetylglucosamine 2-epimerase
33.08	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.