IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.08   STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
840	 34.83	0	924292..924624	-	110	148267287	-	SaurJH9_0853	-	XRE family transcriptional regulator
841	 34.87	0	924887..925081	+	64	148267288	-	SaurJH9_0854	-	helix-turn-helix domain-containing protein
842	 35.55	0	925081..925848	+	255	148267289	-	SaurJH9_0855	-	prophage antirepressor
843	 35.56	0	925849..926073	+	74	148267290	-	SaurJH9_0856	-	hypothetical protein
844	 36.67	+1	926113..926562	+	149	148267291	-	SaurJH9_0857	-	hypothetical protein
845	 34.23	0	926576..926797	+	73	148267292	-	SaurJH9_0858	-	hypothetical protein
846	 36.42	+1	926790..926951	+	53	148267293	-	SaurJH9_0859	-	hypothetical protein
847	 32.34	0	927045..927347	+	100	148267294	-	SaurJH9_0860	-	hypothetical protein
848	 33.33	0	927352..927612	+	86	148267295	-	SaurJH9_0861	-	hypothetical protein
849	 35.14	0	927622..927843	+	73	148267296	-	SaurJH9_0862	-	hypothetical protein
850	 35.42	0	927836..928459	+	207	148267297	-	SaurJH9_0863	-	hypothetical protein
851	 39.63	+1	928459..928887	+	142	148267298	-	SaurJH9_0864	-	single-strand binding protein
852	 38.37	+1	928901..929575	+	224	148267299	-	SaurJH9_0865	-	hypothetical protein
853	 28.37	-1	929714..929995	-	93	148267300	-	SaurJH9_0866	-	hypothetical protein
854	 33.46	0	930061..930831	+	256	148267301	-	SaurJH9_0867	-	hypothetical protein
855	 35.64	0	930841..931620	+	259	148267302	-	SaurJH9_0868	-	DNA replication protein-like protein
856	 37.11	+1	931614..931772	+	52	148267303	-	SaurJH9_0869	-	hypothetical protein
857	 36.49	+1	931785..932006	+	73	148267304	-	SaurJH9_0870	-	hypothetical protein
858	 34.81	0	932016..932420	+	134	148267305	-	SaurJH9_0871	-	hypothetical protein
859	 30.65	0	932425..932610	+	61	148267306	-	SaurJH9_0872	-	hypothetical protein
860	 38.89	+1	932611..932916	+	101	148267307	-	SaurJH9_0873	-	hypothetical protein
861	 39.78	+2	933044..933400	+	118	148267308	-	SaurJH9_0874	-	PVL ORF-50 family protein
862	 35.80	0	933404..933646	+	80	148267309	-	SaurJH9_0875	-	phage conserved Open Reading Frame 51
863	 39.52	+1	933655..934026	+	123	148267310	-	SaurJH9_0876	-	hypothetical protein
864	 37.65	+1	934019..934273	+	84	148267311	-	SaurJH9_0877	-	hypothetical protein
865	 36.26	0	934260..934430	+	56	148267312	-	SaurJH9_0878	-	hypothetical protein
866	 39.70	+2	934423..934956	+	177	148267313	-	SaurJH9_0879	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
867	 37.20	+1	934993..935199	+	68	148267314	-	SaurJH9_0880	-	hypothetical protein
868	 30.39	0	935187..935390	+	67	148267315	-	SaurJH9_0881	-	hypothetical protein
869	 26.58	-1	935583..935819	+	78	148267316	-	SaurJH9_0882	-	hypothetical protein
870	 39.55	+1	935809..935985	+	58	148267317	-	SaurJH9_0883	-	transcriptional activator RinB
871	 36.19	0	935986..936090	+	34	148267318	-	SaurJH9_0884	-	hypothetical protein
872	 32.39	0	936156..936578	+	140	148267319	-	SaurJH9_0885	-	RinA family phage transcriptional regulator
873	 36.57	+1	936766..937260	+	164	148267320	-	SaurJH9_0886	-	terminase small subunit
874	 33.64	0	937263..938558	+	431	148267321	-	SaurJH9_0887	-	PBSX family phage terminase large subunit
875	 33.33	0	938569..940107	+	512	148267322	-	SaurJH9_0888	-	SPP1 family phage portal protein
876	 34.64	0	940114..941109	+	331	148267323	-	SaurJH9_0889	-	SPP1 family phage head morphogenesis protein
877	 34.50	0	941182..941352	+	56	148267324	-	SaurJH9_0890	-	hypothetical protein
878	 34.62	0	941461..942081	+	206	148267325	-	SaurJH9_0891	-	hypothetical protein
879	 34.77	0	942095..943069	+	324	148267326	-	SaurJH9_0892	-	hypothetical protein
880	 34.03	0	943091..943378	+	95	148267327	-	SaurJH9_0893	-	hypothetical protein
881	 35.44	0	943387..943719	+	110	148267328	-	SaurJH9_0894	-	hypothetical protein
882	 33.66	0	943716..944018	+	100	148267329	-	SaurJH9_0895	-	hypothetical protein
883	 34.48	0	944018..944365	+	115	148267330	-	SaurJH9_0896	-	HK97 family phage protein
884	 32.29	0	944377..944760	+	127	148267331	-	SaurJH9_0897	-	hypothetical protein
885	 36.60	+1	944779..945360	+	193	148267332	-	SaurJH9_0898	-	TP901-1 family phage major tail protein
886	 36.61	+1	945422..945787	+	121	148267333	-	SaurJH9_0899	-	hypothetical protein
887	 33.04	0	945817..946161	+	114	148267334	-	SaurJH9_0900	-	hypothetical protein
888	 34.92	0	946178..949645	+	1155	148267335	-	SaurJH9_0901	-	Phage-related protein-like protein
889	 30.70	0	949658..950605	+	315	148267336	-	SaurJH9_0902	-	hypothetical protein
890	 35.65	0	950614..952515	+	633	148267337	-	SaurJH9_0903	-	phage minor structural protein
891	 35.90	0	952530..954440	+	636	148267338	-	SaurJH9_0904	-	hypothetical protein
892	 35.58	0	954440..956263	+	607	148267339	-	SaurJH9_0905	-	hypothetical protein
893	 36.24	0	956263..956640	+	125	148267340	-	SaurJH9_0906	-	hypothetical protein
894	 30.46	0	956644..956817	+	57	148267341	-	SaurJH9_0907	-	hypothetical protein
895	 31.33	0	956857..957156	+	99	148267342	-	SaurJH9_0908	-	hypothetical protein
896	 36.44	+1	957293..959191	+	632	148267343	-	SaurJH9_0909	-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
897	 33.90	0	959204..960442	+	412	148267344	-	SaurJH9_0910	-	hypothetical protein
898	 32.35	0	960439..960843	+	134	148267345	-	SaurJH9_0911	-	hypothetical protein
899	 38.41	+1	960899..961174	+	91	148267346	-	SaurJH9_0912	-	SPP1 family holin
900	 39.28	+1	961161..962573	+	470	148267347	-	SaurJH9_0913	-	CHAP domain-containing protein
901	 30.11	0	962633..963190	-	185	148267348	-	SaurJH9_0914	-	hypothetical protein
902	 24.32	-2	963788..963898	+	36	148267349	-	SaurJH9_0915	-	hypothetical protein
903	 30.35	0	963885..964085	+	66	148267350	-	SaurJH9_0916	-	hypothetical protein
904	 26.03	-2	964915..965229	-	104	148267351	-	SaurJH9_0917	-	hypothetical protein
905	 32.76	0	965594..966634	+	346	148267352	-	SaurJH9_0918	-	hypothetical protein
906	 37.27	+1	966648..967715	+	355	148267353	-	SaurJH9_0919	-	2-nitropropane dioxygenase, NPD
907	 33.33	0	968100..968948	+	282	148267354	-	SaurJH9_0920	-	hypothetical protein
908	 32.37	0	968961..969788	+	275	148267355	-	SaurJH9_0921	-	hypothetical protein
909	 33.56	0	969815..971134	+	439	148267356	-	SaurJH9_0922	-	metallophosphoesterase
910	 36.17	0	971218..972135	+	305	148267357	-	SaurJH9_0923	-	lipoyl synthase
911	 28.12	-1	972265..972648	+	127	148267358	-	SaurJH9_0924	-	hypothetical protein
912	 30.91	0	972854..974173	+	439	148267359	-	SaurJH9_0925	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
913	 31.84	0	974247..974513	-	88	148267360	-	SaurJH9_0926	-	hypothetical protein
914	 29.43	-1	974611..975045	+	144	148267361	-	SaurJH9_0927	-	hypothetical protein
915	 34.87	0	975045..975824	+	259	148267362	-	SaurJH9_0928	-	HAD family hydrolase
916	 34.27	0	975857..976816	+	319	148267363	-	SaurJH9_0929	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
917	 18.92	-2	977070..977180	+	36	148267364	-	SaurJH9_0930	-	hypothetical protein
918	 26.14	-2	977228..977380	+	50	148267365	-	SaurJH9_0931	-	hypothetical protein
919	 34.22	0	977396..978853	+	485	148267366	-	SaurJH9_0932	-	D-alanine--D-alanyl carrier protein ligase
920	 30.04	0	978850..980064	+	404	148267367	-	SaurJH9_0933	-	membrane bound O-acyl transferase, MBOAT family protein
921	 29.11	-1	980082..980318	+	78	148267368	-	SaurJH9_0934	-	D-alanine--poly(phosphoribitol) ligase subunit 2
922	 32.06	0	980315..981490	+	391	148267369	-	SaurJH9_0935	-	D-alanyl-lipoteichoic acid biosynthesis protein DltD
923	 39.09	+1	981753..981995	-	80	148267370	-	SaurJH9_0936	-	NifU domain-containing protein
924	 30.86	0	982096..982419	+	107	148267371	-	SaurJH9_0937	-	hypothetical protein
925	 36.71	+1	982478..983542	-	354	148267372	-	SaurJH9_0938	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
926	 35.02	0	983859..984095	+	78	148267373	-	SaurJH9_0939	-	hypothetical protein
927	 37.78	+1	984108..984467	+	119	148267374	-	SaurJH9_0940	-	iron-sulfur cluster assembly accessory protein
928	 35.65	0	984921..986129	+	402	148267375	-	SaurJH9_0941	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
929	 33.94	0	986260..987735	+	491	148267376	-	SaurJH9_0942	-	leucyl aminopeptidase
930	 32.80	0	988146..989462	+	438	148267377	-	SaurJH9_0943	-	Na+/H+ antiporter NhaC
931	 33.33	0	989481..989855	+	124	148267378	-	SaurJH9_0944	-	hypothetical protein
932	 34.37	0	989911..991065	-	384	148267379	-	SaurJH9_0945	-	hypothetical protein
933	 32.21	0	991314..991670	-	118	148267380	-	SaurJH9_0946	-	putative monovalent cation/H+ antiporter subunit G
934	 32.31	0	991648..991941	-	97	148267381	-	SaurJH9_0947	-	putative monovalent cation/H+ antiporter subunit F
935	 29.17	-1	991941..992420	-	159	148267382	-	SaurJH9_0948	-	putative monovalent cation/H+ antiporter subunit E
936	 33.73	0	992422..993918	-	498	148267383	-	SaurJH9_0949	-	putative monovalent cation/H+ antiporter subunit D
937	 34.80	0	993911..994252	-	113	148267384	-	SaurJH9_0950	-	putative monovalent cation/H+ antiporter subunit C
938	 33.57	0	994252..994680	-	142	148267385	-	SaurJH9_0951	-	putative monovalent cation/H+ antiporter subunit B
939	 33.54	0	994673..997078	-	801	148267386	-	SaurJH9_0952	-	monovalent cation/H+ antiporter subunit A
33.08	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.