IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
777	 37.50	+1	864279..865214	+	311	148267224	-	SaurJH9_0788	-	thioredoxin reductase
778	 31.25	0	866100..867011	+	303	148267225	-	SaurJH9_0790	-	hypothetical protein
779	 33.33	0	867008..868003	+	331	148267226	-	SaurJH9_0791	-	hypothetical protein
780	 32.91	0	868114..869058	+	314	148267227	-	SaurJH9_0792	-	hypothetical protein
781	 34.35	0	869622..870209	+	195	148267228	-	SaurJH9_0793	-	ATP-dependent Clp protease, proteolytic subunit ClpP
782	 33.78	0	870452..871354	-	300	148267229	-	SaurJH9_0794	-	hypothetical protein
783	 35.24	0	872057..872686	+	209	148267230	-	SaurJH9_0795	-	hypothetical protein
784	 37.48	+1	873443..874456	+	337	148267231	-	SaurJH9_0796	-	DeoR family transcriptional regulator
785	 37.98	+1	874509..875519	+	336	148267232	-	SaurJH9_0797	-	glyceraldehyde-3-phosphate dehydrogenase, type I
786	 34.68	0	875658..876848	+	396	148267233	pgk	SaurJH9_0798	-	phosphoglycerate kinase
787	 36.88	+1	876970..877731	+	253	148267234	-	SaurJH9_0799	-	triosephosphate isomerase
788	 36.63	+1	877734..879251	+	505	148267235	-	SaurJH9_0800	-	phosphoglyceromutase
789	 36.93	+1	879381..880685	+	434	148267236	-	SaurJH9_0801	-	phosphopyruvate hydratase
790	 31.81	0	881024..881482	+	152	148267237	-	SaurJH9_0802	-	hypothetical protein
791	 30.34	0	881549..881782	+	77	148267238	secG	SaurJH9_0803	-	preprotein translocase subunit SecG
792	 33.20	0	881898..882638	+	246	148267239	-	SaurJH9_0804	-	esterase/lipase-like protein
793	 34.22	0	882672..885044	+	790	148267240	-	SaurJH9_0805	-	ribonuclease R
794	 35.48	0	885066..885530	+	154	148267241	smpB	SaurJH9_0806	-	SsrA-binding protein
795	 24.07	-2	886852..887175	-	107	148267242	-	SaurJH9_0807	-	hypothetical protein
796	 36.73	+1	887191..887337	-	48	148267243	-	SaurJH9_0808	-	hypothetical protein
797	 27.30	-1	887529..888257	-	242	148267244	-	SaurJH9_0809	-	hypothetical protein
798	 27.78	-1	888855..889376	+	173	148267245	-	SaurJH9_0810	-	hypothetical protein
799	 34.65	0	889515..890045	+	176	148267246	-	SaurJH9_0811	-	GCN5-related N-acetyltransferase
800	 38.85	+1	890308..893025	+	905	148267247	-	SaurJH9_0812	-	cell wall anchor domain-containing protein
801	 29.61	-1	893246..894748	+	500	148267248	-	SaurJH9_0813	-	hypothetical protein
802	 31.77	0	895101..896123	+	340	148267249	-	SaurJH9_0814	-	hypothetical protein
803	 29.69	-1	896458..896979	+	173	148267250	-	SaurJH9_0815	-	hypothetical protein
804	 34.21	0	897320..898006	+	228	148267251	-	SaurJH9_0816	-	micrococcal nuclease
805	 39.80	+2	898363..898563	+	66	148267252	-	SaurJH9_0817	-	cold-shock DNA-binding domain-containing protein
806	 30.59	0	899055..899273	-	72	148267253	-	SaurJH9_0818	-	hypothetical protein
807	 27.04	-1	899350..899619	-	89	148267254	-	SaurJH9_0819	-	hypothetical protein
808	 30.88	0	899707..900276	-	189	148267255	-	SaurJH9_0820	-	hypothetical protein
809	 28.57	-1	900464..900652	-	62	148267256	-	SaurJH9_0821	-	hypothetical protein
810	 33.33	0	901264..901485	+	73	148267257	-	SaurJH9_0822	-	hypothetical protein
811	 27.43	-1	901482..901718	-	78	148267258	-	SaurJH9_0823	-	hypothetical protein
812	 34.88	0	901943..902524	+	193	148267259	-	SaurJH9_0824	-	phosphoglycerate mutase
813	 30.10	0	902597..903214	-	205	148267260	-	SaurJH9_0825	-	lysine exporter protein LysE/YggA
814	 29.70	-1	903369..903863	-	164	148267261	-	SaurJH9_0826	-	hypothetical protein
815	 35.93	0	904262..904684	-	140	148267262	-	SaurJH9_0827	-	OsmC family protein
816	 32.36	0	904832..905548	+	238	148267263	-	SaurJH9_0828	-	3-dehydroquinate dehydratase
817	 32.96	0	905631..906170	+	179	148267264	-	SaurJH9_0829	-	nitroreductase
818	 33.64	0	906321..906641	-	106	148267265	-	SaurJH9_0830	-	thioredoxin domain-containing protein
819	 29.41	-1	906785..907141	+	118	148267266	-	SaurJH9_0831	-	hypothetical protein
820	 33.86	0	907299..907679	+	126	148267267	-	SaurJH9_0832	-	glycine cleavage system protein H
821	 21.93	-2	907743..907856	+	37	148267268	-	SaurJH9_0833	-	hypothetical protein
822	 33.22	0	907858..908736	+	292	148267269	-	SaurJH9_0834	-	hypothetical protein
823	 30.51	0	909530..909919	+	129	148267270	-	SaurJH9_0836	-	TOPRIM domain-containing protein
824	 27.61	-1	909912..910208	+	98	148267271	-	SaurJH9_0837	-	hypothetical protein
825	 34.80	0	910458..911483	+	341	148267272	-	SaurJH9_0838	-	ABC transporter related
826	 35.20	0	911476..912171	+	231	148267273	-	SaurJH9_0839	-	binding-protein-dependent transport systems inner membrane component
827	 30.17	0	912189..913010	+	273	148267274	-	SaurJH9_0840	-	NLPA lipoprotein
828	 29.74	-1	913364..913558	+	64	148267275	-	SaurJH9_0841	-	CsbD family protein
829	 33.57	0	913792..914643	-	283	148267276	-	SaurJH9_0842	-	hypothetical protein
830	 33.86	0	914971..915732	+	253	148267277	-	SaurJH9_0843	-	FeS assembly ATPase SufC
831	 34.10	0	915830..917137	+	435	148267278	-	SaurJH9_0844	-	FeS assembly protein SufD
832	 37.20	+1	917252..918493	+	413	148267279	-	SaurJH9_0845	-	SufS subfamily cysteine desulfurase
833	 36.13	0	918483..918947	+	154	148267280	-	SaurJH9_0846	-	NifU family SUF system FeS assembly protein
834	 34.41	0	919098..920495	+	465	148267281	-	SaurJH9_0847	-	FeS assembly protein SufB
835	 32.48	0	920563..921612	-	349	148267282	-	SaurJH9_0848	-	phage integrase family protein
836	 25.00	-2	921725..921904	+	59	148267283	-	SaurJH9_0849	-	hypothetical protein
837	 29.05	-1	921884..922816	-	310	148267284	-	SaurJH9_0850	-	hypothetical protein
838	 28.24	-1	922848..923573	-	241	148267285	-	SaurJH9_0851	-	hypothetical protein
839	 26.96	-1	923601..924275	-	224	148267286	-	SaurJH9_0852	-	hypothetical protein
840	 34.83	0	924292..924624	-	110	148267287	-	SaurJH9_0853	-	XRE family transcriptional regulator
841	 34.87	0	924887..925081	+	64	148267288	-	SaurJH9_0854	-	helix-turn-helix domain-containing protein
842	 35.55	0	925081..925848	+	255	148267289	-	SaurJH9_0855	-	prophage antirepressor
843	 35.56	0	925849..926073	+	74	148267290	-	SaurJH9_0856	-	hypothetical protein
844	 36.67	+1	926113..926562	+	149	148267291	-	SaurJH9_0857	-	hypothetical protein
845	 34.23	0	926576..926797	+	73	148267292	-	SaurJH9_0858	-	hypothetical protein
846	 36.42	+1	926790..926951	+	53	148267293	-	SaurJH9_0859	-	hypothetical protein
847	 32.34	0	927045..927347	+	100	148267294	-	SaurJH9_0860	-	hypothetical protein
848	 33.33	0	927352..927612	+	86	148267295	-	SaurJH9_0861	-	hypothetical protein
849	 35.14	0	927622..927843	+	73	148267296	-	SaurJH9_0862	-	hypothetical protein
850	 35.42	0	927836..928459	+	207	148267297	-	SaurJH9_0863	-	hypothetical protein
851	 39.63	+1	928459..928887	+	142	148267298	-	SaurJH9_0864	-	single-strand binding protein
852	 38.37	+1	928901..929575	+	224	148267299	-	SaurJH9_0865	-	hypothetical protein
853	 28.37	-1	929714..929995	-	93	148267300	-	SaurJH9_0866	-	hypothetical protein
854	 33.46	0	930061..930831	+	256	148267301	-	SaurJH9_0867	-	hypothetical protein
855	 35.64	0	930841..931620	+	259	148267302	-	SaurJH9_0868	-	DNA replication protein-like protein
856	 37.11	+1	931614..931772	+	52	148267303	-	SaurJH9_0869	-	hypothetical protein
857	 36.49	+1	931785..932006	+	73	148267304	-	SaurJH9_0870	-	hypothetical protein
858	 34.81	0	932016..932420	+	134	148267305	-	SaurJH9_0871	-	hypothetical protein
859	 30.65	0	932425..932610	+	61	148267306	-	SaurJH9_0872	-	hypothetical protein
860	 38.89	+1	932611..932916	+	101	148267307	-	SaurJH9_0873	-	hypothetical protein
861	 39.78	+2	933044..933400	+	118	148267308	-	SaurJH9_0874	-	PVL ORF-50 family protein
862	 35.80	0	933404..933646	+	80	148267309	-	SaurJH9_0875	-	phage conserved Open Reading Frame 51
863	 39.52	+1	933655..934026	+	123	148267310	-	SaurJH9_0876	-	hypothetical protein
864	 37.65	+1	934019..934273	+	84	148267311	-	SaurJH9_0877	-	hypothetical protein
865	 36.26	0	934260..934430	+	56	148267312	-	SaurJH9_0878	-	hypothetical protein
866	 39.70	+2	934423..934956	+	177	148267313	-	SaurJH9_0879	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
867	 37.20	+1	934993..935199	+	68	148267314	-	SaurJH9_0880	-	hypothetical protein
868	 30.39	0	935187..935390	+	67	148267315	-	SaurJH9_0881	-	hypothetical protein
869	 26.58	-1	935583..935819	+	78	148267316	-	SaurJH9_0882	-	hypothetical protein
870	 39.55	+1	935809..935985	+	58	148267317	-	SaurJH9_0883	-	transcriptional activator RinB
871	 36.19	0	935986..936090	+	34	148267318	-	SaurJH9_0884	-	hypothetical protein
872	 32.39	0	936156..936578	+	140	148267319	-	SaurJH9_0885	-	RinA family phage transcriptional regulator
873	 36.57	+1	936766..937260	+	164	148267320	-	SaurJH9_0886	-	terminase small subunit
874	 33.64	0	937263..938558	+	431	148267321	-	SaurJH9_0887	-	PBSX family phage terminase large subunit
875	 33.33	0	938569..940107	+	512	148267322	-	SaurJH9_0888	-	SPP1 family phage portal protein
876	 34.64	0	940114..941109	+	331	148267323	-	SaurJH9_0889	-	SPP1 family phage head morphogenesis protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.